Wall clock time and date at job start Mon Mar 30 2020 02:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.58952 * 2 1 4 4 C 1.53195 * 109.59953 * 239.56461 * 2 1 3 5 5 C 1.53036 * 109.31181 * 294.87111 * 4 2 1 6 6 C 1.53040 * 109.52545 * 298.61041 * 5 4 2 7 7 H 1.09001 * 109.49988 * 301.41931 * 6 5 4 8 8 C 1.53001 * 109.49883 * 181.35806 * 6 5 4 9 9 O 1.42893 * 109.47556 * 174.99924 * 8 6 5 10 10 C 1.53187 * 109.31173 * 61.37336 * 6 5 4 11 11 N 1.46922 * 108.77822 * 305.36309 * 10 6 5 12 12 C 1.36936 * 120.63412 * 233.58856 * 11 10 6 13 13 H 1.07999 * 120.00178 * 151.82554 * 12 11 10 14 14 C 1.38814 * 119.99789 * 331.82592 * 12 11 10 15 15 N 1.31613 * 120.00261 * 343.09006 * 14 12 11 16 16 Si 1.86804 * 119.99792 * 163.08739 * 14 12 11 17 17 H 1.48492 * 109.47162 * 60.00081 * 16 14 12 18 18 H 1.48498 * 109.46674 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47156 * 299.99898 * 16 14 12 20 20 H 1.09005 * 109.46757 * 299.71641 * 1 2 3 21 21 H 1.09001 * 109.46830 * 59.71718 * 1 2 3 22 22 H 1.08991 * 109.46938 * 179.71969 * 1 2 3 23 23 H 1.09002 * 109.51004 * 174.90621 * 4 2 1 24 24 H 1.09003 * 109.48275 * 54.81417 * 4 2 1 25 25 H 1.09004 * 109.45711 * 178.59751 * 5 4 2 26 26 H 1.09000 * 109.45975 * 58.62433 * 5 4 2 27 27 H 1.09003 * 109.47143 * 295.00337 * 8 6 5 28 28 H 1.09006 * 109.47081 * 54.99928 * 8 6 5 29 29 H 0.96696 * 114.00354 * 180.02562 * 9 8 6 30 30 H 1.09006 * 109.58947 * 65.15676 * 10 6 5 31 31 H 1.08998 * 109.58606 * 185.57464 * 10 6 5 32 32 H 0.97004 * 120.00436 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0439 -0.7311 -1.2443 5 6 1.6414 -2.2056 -1.1673 6 6 2.2800 -2.8463 0.0671 7 1 3.3640 -2.7475 0.0087 8 6 1.9049 -4.3285 0.1250 9 8 2.5940 -4.9523 1.2102 10 6 1.7692 -2.1393 1.3264 11 7 2.0226 -0.6980 1.1954 12 6 2.7045 -0.0181 2.1690 13 1 3.2762 0.8618 1.9136 14 6 2.6608 -0.4599 3.4842 15 7 1.7266 -1.3058 3.8637 16 14 3.9282 0.1461 4.7155 17 1 3.8395 1.6239 4.8304 18 1 3.6651 -0.4706 6.0406 19 1 5.2876 -0.2339 4.2544 20 1 -0.3633 0.5095 0.8926 21 1 -0.3633 0.5182 -0.8875 22 1 -0.3633 -1.0276 -0.0050 23 1 3.1301 -0.6522 -1.2902 24 1 1.6080 -0.2811 -2.1363 25 1 1.9843 -2.7228 -2.0635 26 1 0.5565 -2.2826 -1.0963 27 1 0.8294 -4.4255 0.2737 28 1 2.1873 -4.8116 -0.8104 29 1 2.4036 -5.8954 1.3070 30 1 0.6986 -2.3138 1.4347 31 1 2.2944 -2.5247 2.2003 32 1 1.6964 -1.6148 4.7827 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606251026.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:09 Heat of formation + Delta-G solvation = -66.538528 kcal Electronic energy + Delta-G solvation = -13712.654242 eV Core-core repulsion = 11479.274946 eV Total energy + Delta-G solvation = -2233.379296 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.89894 -37.50719 -35.04486 -33.42845 -31.75826 -28.87708 -27.08638 -25.43716 -23.80186 -21.92622 -19.94400 -18.60993 -18.10581 -16.93244 -16.05757 -15.78269 -15.49490 -15.07675 -14.35119 -14.17731 -13.98319 -13.59227 -13.12863 -12.95667 -12.86116 -12.59210 -12.32857 -12.02147 -11.83964 -11.78494 -11.39306 -11.13581 -10.91711 -10.75719 -10.47291 -8.62151 -7.83677 -5.29009 1.43412 1.47510 1.53434 2.51585 3.29197 3.46051 3.70715 4.10400 4.15154 4.30058 4.36981 4.43302 4.67610 4.72570 4.81658 4.87506 4.95730 5.02836 5.02952 5.18730 5.23019 5.44015 5.46920 5.57953 5.61356 5.77005 5.90471 6.44306 7.04329 7.19010 7.93663 8.43886 9.21082 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.029699 B = 0.014763 C = 0.011203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.555335 B = 1896.160137 C = 2498.735788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.150 3.850 3 H 0.051 0.949 4 C -0.118 4.118 5 C -0.097 4.097 6 C -0.112 4.112 7 H 0.046 0.954 8 C 0.089 3.911 9 O -0.595 6.595 10 C 0.196 3.804 11 N -0.606 5.606 12 C -0.266 4.266 13 H 0.062 0.938 14 C -0.050 4.050 15 N -0.931 5.931 16 Si 0.964 3.036 17 H -0.273 1.273 18 H -0.293 1.293 19 H -0.281 1.281 20 H 0.021 0.979 21 H 0.075 0.925 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.391 0.609 30 H -0.009 1.009 31 H 0.046 0.954 32 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.017 -4.194 -10.492 11.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.044 3.956 3 H 0.069 0.931 4 C -0.157 4.157 5 C -0.134 4.134 6 C -0.132 4.132 7 H 0.065 0.935 8 C 0.011 3.989 9 O -0.402 6.402 10 C 0.071 3.929 11 N -0.328 5.328 12 C -0.397 4.397 13 H 0.080 0.920 14 C -0.246 4.246 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.199 1.199 18 H -0.219 1.219 19 H -0.208 1.208 20 H 0.040 0.960 21 H 0.094 0.906 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.240 0.760 30 H 0.009 0.991 31 H 0.065 0.935 32 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.813 -3.630 -10.254 10.907 hybrid contribution 0.260 -0.277 1.182 1.242 sum -0.553 -3.907 -9.071 9.892 Atomic orbital electron populations 1.22120 0.97642 1.00763 1.00177 1.20818 0.92713 0.94906 0.87167 0.93060 1.21872 1.00242 0.95858 0.97750 1.21386 1.00290 0.95607 0.96153 1.21743 0.99687 0.93949 0.97821 0.93523 1.22205 0.95149 0.92417 0.89097 1.86578 1.71553 1.28522 1.53593 1.20400 0.94869 0.82726 0.94926 1.44404 1.64325 1.04141 1.19954 1.19460 1.22038 1.10525 0.87665 0.91996 1.25787 0.99514 1.00699 0.98587 1.70183 1.33458 1.37325 1.16662 0.85398 0.79324 0.78093 0.77999 1.19854 1.21950 1.20765 0.95968 0.90633 0.93630 0.93335 0.89346 0.90098 0.91696 0.93626 0.91234 0.76031 0.99132 0.93540 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.66 9.03 71.98 0.65 -5.01 16 2 C 0.15 6.32 3.29 44.97 0.15 6.47 16 3 H 0.05 2.19 7.93 -2.39 -0.02 2.17 16 4 C -0.12 -3.95 5.55 30.67 0.17 -3.78 16 5 C -0.10 -3.06 4.96 30.62 0.15 -2.91 16 6 C -0.11 -4.42 2.57 -10.72 -0.03 -4.45 16 7 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 8 C 0.09 2.87 6.43 71.98 0.46 3.34 16 9 O -0.59 -21.09 13.31 -148.98 -1.98 -23.08 16 10 C 0.20 10.07 4.01 86.36 0.35 10.42 16 11 N -0.61 -31.90 2.70 -675.23 -1.82 -33.73 16 12 C -0.27 -15.53 9.58 84.03 0.81 -14.73 16 13 H 0.06 3.52 7.88 -2.91 -0.02 3.50 16 14 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 15 N -0.93 -58.09 11.20 21.65 0.24 -57.85 16 16 Si 0.96 47.37 29.59 68.60 2.03 49.40 16 17 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 19 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 20 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 21 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 22 H 0.04 1.74 5.72 -2.39 -0.01 1.73 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 26 H 0.06 1.99 6.49 -2.39 -0.02 1.97 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.39 9.04 9.12 -74.06 -0.68 8.36 16 30 H -0.01 -0.51 7.50 -2.38 -0.02 -0.53 16 31 H 0.05 2.80 5.91 -2.39 -0.01 2.79 16 32 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -70.62 252.46 2.01 -68.62 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.42 Total: 9.83 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 3.12 Total: -13.19 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -1.58 Total: -91.58 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -1.98 Total: -23.08 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -70.62 2.01 -68.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606251026.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.079 kcal (2) G-P(sol) polarization free energy of solvation -70.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds