Wall clock time and date at job start Mon Mar 30 2020 02:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.69633 * 2 1 4 4 C 1.53186 * 109.58365 * 120.35050 * 2 1 3 5 5 C 1.53035 * 109.31321 * 65.15821 * 4 2 1 6 6 C 1.53041 * 109.54077 * 61.36282 * 5 4 2 7 7 H 1.08996 * 109.52287 * 58.59914 * 6 5 4 8 8 C 1.53000 * 109.50016 * 178.68514 * 6 5 4 9 9 O 1.42899 * 109.47210 * 184.83820 * 8 6 5 10 10 C 1.53197 * 109.30877 * 298.63566 * 6 5 4 11 11 N 1.46922 * 109.58967 * 239.64462 * 2 1 3 12 12 C 1.36931 * 120.63501 * 114.09355 * 11 2 1 13 13 H 1.07998 * 120.00366 * 152.74407 * 12 11 2 14 14 C 1.38815 * 119.99808 * 332.74279 * 12 11 2 15 15 N 1.31621 * 119.99984 * 341.85782 * 14 12 11 16 16 Si 1.86800 * 120.00122 * 161.85461 * 14 12 11 17 17 H 1.48504 * 109.47115 * 90.00059 * 16 14 12 18 18 H 1.48500 * 109.47480 * 210.00260 * 16 14 12 19 19 H 1.48499 * 109.47007 * 330.00291 * 16 14 12 20 20 H 1.09002 * 109.46898 * 180.35598 * 1 2 3 21 21 H 1.08995 * 109.47325 * 300.35491 * 1 2 3 22 22 H 1.09000 * 109.47276 * 60.36319 * 1 2 3 23 23 H 1.09001 * 109.50136 * 305.19814 * 4 2 1 24 24 H 1.09008 * 109.49406 * 185.10753 * 4 2 1 25 25 H 1.08998 * 109.45995 * 301.33653 * 5 4 2 26 26 H 1.09008 * 109.46005 * 181.38007 * 5 4 2 27 27 H 1.08999 * 109.46948 * 304.83656 * 8 6 5 28 28 H 1.09000 * 109.47157 * 64.82961 * 8 6 5 29 29 H 0.96699 * 114.00050 * 180.02562 * 9 8 6 30 30 H 1.09001 * 109.58486 * 294.84511 * 10 6 5 31 31 H 1.09000 * 109.69875 * 174.49526 * 10 6 5 32 32 H 0.97002 * 120.00123 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 1.6415 -2.2039 1.1702 6 6 2.2802 -2.8463 -0.0633 7 1 3.3642 -2.7477 -0.0054 8 6 1.9044 -4.3284 -0.1197 9 8 2.5908 -4.9528 -1.2065 10 6 1.7693 -2.1410 -1.3236 11 7 2.0227 -0.6995 -1.1944 12 6 2.7098 -0.0221 -2.1661 13 1 3.4260 -0.5432 -2.7839 14 6 2.4856 1.3345 -2.3569 15 7 1.3945 1.8947 -1.8795 16 14 3.7326 2.3648 -3.2911 17 1 3.3955 2.3590 -4.7374 18 1 3.7035 3.7594 -2.7817 19 1 5.0902 1.7952 -3.0970 20 1 -0.3633 -1.0277 0.0064 21 1 -0.3634 0.5193 0.8867 22 1 -0.3634 0.5082 -0.8932 23 1 1.6075 -0.2782 2.1369 24 1 3.1298 -0.6501 1.2914 25 1 0.5566 -2.2814 1.0995 26 1 1.9845 -2.7201 2.0670 27 1 2.1891 -4.8112 0.8152 28 1 0.8286 -4.4252 -0.2657 29 1 2.3992 -5.8957 -1.3028 30 1 0.6988 -2.3157 -1.4316 31 1 2.2925 -2.5271 -2.1984 32 1 1.2376 2.8426 -2.0132 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606251027.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:11 Heat of formation + Delta-G solvation = -42.461048 kcal Electronic energy + Delta-G solvation = -13670.873503 eV Core-core repulsion = 11438.538285 eV Total energy + Delta-G solvation = -2232.335218 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.28955 -36.20695 -33.14448 -31.28731 -30.29493 -27.12774 -25.20792 -23.59028 -21.96634 -20.46544 -18.41545 -16.94643 -16.37624 -14.82104 -14.78509 -13.99975 -13.76066 -13.42161 -12.80084 -12.51066 -12.08434 -11.92412 -11.54265 -11.13118 -10.82479 -10.78369 -10.47260 -10.39510 -10.06952 -9.89587 -9.75979 -9.61039 -9.32316 -9.07069 -8.33247 -6.55394 -5.69575 -3.09681 3.43114 3.49944 3.53496 4.54589 4.58258 5.33507 5.43443 5.49604 5.59081 5.68352 5.82369 5.89822 6.17140 6.34299 6.44068 6.45649 6.65068 6.71542 6.79221 6.85540 6.98046 7.05205 7.12174 7.25299 7.74335 7.82272 7.89919 7.96424 8.55879 9.33204 9.96145 10.52807 11.38169 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.039443 B = 0.012145 C = 0.010245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.706995 B = 2304.921483 C = 2732.337637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.187 3.813 3 H 0.095 0.905 4 C -0.135 4.135 5 C -0.102 4.102 6 C -0.105 4.105 7 H 0.071 0.929 8 C 0.084 3.916 9 O -0.569 6.569 10 C 0.158 3.842 11 N -0.587 5.587 12 C -0.247 4.247 13 H 0.065 0.935 14 C 0.000 4.000 15 N -0.900 5.900 16 Si 0.899 3.101 17 H -0.288 1.288 18 H -0.291 1.291 19 H -0.281 1.281 20 H 0.024 0.976 21 H 0.025 0.975 22 H 0.074 0.926 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.035 0.965 28 H 0.041 0.959 29 H 0.369 0.631 30 H 0.014 0.986 31 H 0.057 0.943 32 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.607 -8.728 5.398 10.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.080 3.920 3 H 0.112 0.888 4 C -0.174 4.174 5 C -0.140 4.140 6 C -0.126 4.126 7 H 0.090 0.910 8 C 0.006 3.994 9 O -0.373 6.373 10 C 0.032 3.968 11 N -0.309 5.309 12 C -0.377 4.377 13 H 0.082 0.918 14 C -0.198 4.198 15 N -0.545 5.545 16 Si 0.729 3.271 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.206 1.206 20 H 0.043 0.957 21 H 0.044 0.956 22 H 0.093 0.907 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.215 0.785 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.414 -7.922 5.285 9.533 hybrid contribution 0.298 -0.022 -0.304 0.426 sum -0.116 -7.945 4.982 9.378 Atomic orbital electron populations 1.22093 0.98849 0.98361 1.00980 1.20337 0.91718 0.96904 0.83005 0.88766 1.22126 1.00507 0.94939 0.99817 1.21397 1.00061 0.96779 0.95770 1.21670 1.01265 0.91280 0.98346 0.91017 1.22278 0.94912 0.94322 0.87931 1.86576 1.71469 1.26476 1.52806 1.20807 0.96417 0.85368 0.94219 1.44134 1.64714 1.02627 1.19416 1.19200 1.14693 0.91891 1.11926 0.91764 1.24966 0.96654 0.98381 0.99750 1.70031 1.23677 1.11137 1.49614 0.86349 0.81572 0.79718 0.79462 1.21555 1.21685 1.20626 0.95736 0.95582 0.90722 0.93286 0.92869 0.92345 0.93904 0.94631 0.94114 0.78534 0.96809 0.92493 0.93865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.82 37.16 0.33 -2.93 16 2 C 0.19 4.49 2.33 -67.60 -0.16 4.33 16 3 H 0.09 2.57 6.01 -51.93 -0.31 2.26 16 4 C -0.13 -2.68 5.55 -26.62 -0.15 -2.83 16 5 C -0.10 -1.80 4.96 -26.69 -0.13 -1.93 16 6 C -0.11 -1.98 2.58 -90.50 -0.23 -2.21 16 7 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 8 C 0.08 1.26 6.43 37.16 0.24 1.50 16 9 O -0.57 -8.70 13.31 -35.23 -0.47 -9.17 16 10 C 0.16 3.57 5.22 -3.71 -0.02 3.55 16 11 N -0.59 -15.16 2.70 -164.77 -0.45 -15.61 16 12 C -0.25 -7.01 9.58 -15.06 -0.14 -7.15 16 13 H 0.06 1.82 7.89 -52.49 -0.41 1.40 16 14 C 0.00 0.01 4.89 -17.43 -0.09 -0.07 16 15 N -0.90 -25.97 10.05 55.49 0.56 -25.41 16 16 Si 0.90 22.14 29.59 -169.99 -5.03 17.11 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H 0.02 0.51 5.72 -51.93 -0.30 0.21 16 21 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.07 1.93 7.11 -51.93 -0.37 1.56 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.05 1.09 8.14 -51.92 -0.42 0.66 16 25 H 0.06 1.01 6.49 -51.93 -0.34 0.68 16 26 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 27 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.37 3.57 9.12 45.56 0.42 3.98 16 30 H 0.01 0.32 7.50 -51.93 -0.39 -0.07 16 31 H 0.06 1.34 7.77 -51.93 -0.40 0.94 16 32 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 250.27 15.07 3.77 3.77 Total: -1.00 -30.46 250.27 -6.17 -36.63 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.20 Total: 0.42 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.35 Total: -7.75 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.11 Total: -41.01 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.47 Total: -9.17 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.46 -6.17 -36.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606251027.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.833 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds