Wall clock time and date at job start Mon Mar 30 2020 02:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.69633 * 2 1 4 4 C 1.53186 * 109.58365 * 120.35050 * 2 1 3 5 5 C 1.53035 * 109.31321 * 65.15821 * 4 2 1 6 6 C 1.53041 * 109.54077 * 61.36282 * 5 4 2 7 7 H 1.08996 * 109.52287 * 58.59914 * 6 5 4 8 8 C 1.53000 * 109.50016 * 178.68514 * 6 5 4 9 9 O 1.42899 * 109.47210 * 184.83820 * 8 6 5 10 10 C 1.53197 * 109.30877 * 298.63566 * 6 5 4 11 11 N 1.46922 * 109.58967 * 239.64462 * 2 1 3 12 12 C 1.36931 * 120.63501 * 114.09355 * 11 2 1 13 13 H 1.07998 * 120.00366 * 152.74407 * 12 11 2 14 14 C 1.38815 * 119.99808 * 332.74279 * 12 11 2 15 15 N 1.31621 * 119.99984 * 341.85782 * 14 12 11 16 16 Si 1.86800 * 120.00122 * 161.85461 * 14 12 11 17 17 H 1.48504 * 109.47115 * 90.00059 * 16 14 12 18 18 H 1.48500 * 109.47480 * 210.00260 * 16 14 12 19 19 H 1.48499 * 109.47007 * 330.00291 * 16 14 12 20 20 H 1.09002 * 109.46898 * 180.35598 * 1 2 3 21 21 H 1.08995 * 109.47325 * 300.35491 * 1 2 3 22 22 H 1.09000 * 109.47276 * 60.36319 * 1 2 3 23 23 H 1.09001 * 109.50136 * 305.19814 * 4 2 1 24 24 H 1.09008 * 109.49406 * 185.10753 * 4 2 1 25 25 H 1.08998 * 109.45995 * 301.33653 * 5 4 2 26 26 H 1.09008 * 109.46005 * 181.38007 * 5 4 2 27 27 H 1.08999 * 109.46948 * 304.83656 * 8 6 5 28 28 H 1.09000 * 109.47157 * 64.82961 * 8 6 5 29 29 H 0.96699 * 114.00050 * 180.02562 * 9 8 6 30 30 H 1.09001 * 109.58486 * 294.84511 * 10 6 5 31 31 H 1.09000 * 109.69875 * 174.49526 * 10 6 5 32 32 H 0.97002 * 120.00123 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 1.6415 -2.2039 1.1702 6 6 2.2802 -2.8463 -0.0633 7 1 3.3642 -2.7477 -0.0054 8 6 1.9044 -4.3284 -0.1197 9 8 2.5908 -4.9528 -1.2065 10 6 1.7693 -2.1410 -1.3236 11 7 2.0227 -0.6995 -1.1944 12 6 2.7098 -0.0221 -2.1661 13 1 3.4260 -0.5432 -2.7839 14 6 2.4856 1.3345 -2.3569 15 7 1.3945 1.8947 -1.8795 16 14 3.7326 2.3648 -3.2911 17 1 3.3955 2.3590 -4.7374 18 1 3.7035 3.7594 -2.7817 19 1 5.0902 1.7952 -3.0970 20 1 -0.3633 -1.0277 0.0064 21 1 -0.3634 0.5193 0.8867 22 1 -0.3634 0.5082 -0.8932 23 1 1.6075 -0.2782 2.1369 24 1 3.1298 -0.6501 1.2914 25 1 0.5566 -2.2814 1.0995 26 1 1.9845 -2.7201 2.0670 27 1 2.1891 -4.8112 0.8152 28 1 0.8286 -4.4252 -0.2657 29 1 2.3992 -5.8957 -1.3028 30 1 0.6988 -2.3157 -1.4316 31 1 2.2925 -2.5271 -2.1984 32 1 1.2376 2.8426 -2.0132 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606251027.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:10 Heat of formation + Delta-G solvation = -63.997118 kcal Electronic energy + Delta-G solvation = -13671.807377 eV Core-core repulsion = 11438.538285 eV Total energy + Delta-G solvation = -2233.269092 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.90679 -37.52818 -34.98702 -32.97618 -32.25116 -28.81954 -26.98601 -25.26965 -23.74859 -22.05199 -20.17784 -18.36143 -18.06359 -16.84522 -16.23431 -15.75264 -15.34327 -15.06894 -14.40949 -14.12035 -13.90853 -13.58628 -13.15071 -12.93650 -12.74069 -12.70960 -12.22853 -12.05682 -11.84546 -11.72024 -11.37453 -11.10926 -10.90907 -10.75532 -10.39665 -8.58477 -7.82666 -5.25646 1.45061 1.46496 1.56495 2.52726 3.29233 3.43628 3.71767 4.05645 4.17748 4.27156 4.44053 4.52818 4.71343 4.76441 4.85872 4.94020 4.99596 5.05049 5.10600 5.14205 5.35332 5.35825 5.41597 5.57959 5.63016 5.82839 6.05903 6.45242 7.04178 7.22291 7.94143 8.44177 9.21544 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.039443 B = 0.012145 C = 0.010245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.706995 B = 2304.921483 C = 2732.337637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.181 3.819 3 H 0.054 0.946 4 C -0.129 4.129 5 C -0.095 4.095 6 C -0.101 4.101 7 H 0.050 0.950 8 C 0.090 3.910 9 O -0.595 6.595 10 C 0.159 3.841 11 N -0.606 5.606 12 C -0.267 4.267 13 H 0.054 0.946 14 C -0.045 4.045 15 N -0.919 5.919 16 Si 0.961 3.039 17 H -0.286 1.286 18 H -0.289 1.289 19 H -0.277 1.277 20 H 0.040 0.960 21 H 0.047 0.953 22 H 0.035 0.965 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.394 0.606 30 H 0.012 0.988 31 H 0.035 0.965 32 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.676 -10.080 6.735 12.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.075 3.925 3 H 0.072 0.928 4 C -0.168 4.168 5 C -0.133 4.133 6 C -0.121 4.121 7 H 0.069 0.931 8 C 0.012 3.988 9 O -0.403 6.403 10 C 0.033 3.967 11 N -0.328 5.328 12 C -0.398 4.398 13 H 0.072 0.928 14 C -0.241 4.241 15 N -0.565 5.565 16 Si 0.789 3.211 17 H -0.213 1.213 18 H -0.215 1.215 19 H -0.202 1.202 20 H 0.059 0.941 21 H 0.066 0.934 22 H 0.054 0.946 23 H 0.091 0.909 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.243 0.757 30 H 0.030 0.970 31 H 0.053 0.947 32 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.488 -9.317 6.631 11.446 hybrid contribution 0.312 0.365 -0.756 0.896 sum -0.176 -8.952 5.875 10.709 Atomic orbital electron populations 1.21908 0.97933 0.99044 1.00078 1.20335 0.92404 0.95406 0.84328 0.92774 1.22002 0.99777 0.96616 0.98365 1.21358 1.00444 0.94932 0.96528 1.21555 0.99866 0.93900 0.96770 0.93099 1.22176 0.95542 0.91770 0.89317 1.86513 1.71839 1.28811 1.53123 1.20859 0.96018 0.84027 0.95763 1.44371 1.64900 1.03954 1.19608 1.19405 1.15041 0.92650 1.12675 0.92848 1.25646 0.98218 0.99210 1.01028 1.70182 1.24798 1.10933 1.50563 0.85386 0.79494 0.78004 0.78189 1.21291 1.21522 1.20232 0.94119 0.93439 0.94571 0.90870 0.94033 0.91494 0.90218 0.91455 0.92843 0.75651 0.97036 0.94682 0.94259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 8.82 71.99 0.63 -5.21 16 2 C 0.18 8.72 2.33 44.98 0.10 8.83 16 3 H 0.05 3.03 6.01 -2.39 -0.01 3.01 16 4 C -0.13 -4.88 5.55 30.67 0.17 -4.71 16 5 C -0.10 -3.01 4.96 30.62 0.15 -2.86 16 6 C -0.10 -3.59 2.58 -10.71 -0.03 -3.61 16 7 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 8 C 0.09 2.41 6.43 71.98 0.46 2.87 16 9 O -0.59 -16.78 13.31 -148.98 -1.98 -18.76 16 10 C 0.16 7.15 5.22 86.36 0.45 7.60 16 11 N -0.61 -31.78 2.70 -675.22 -1.83 -33.60 16 12 C -0.27 -15.56 9.58 84.04 0.81 -14.76 16 13 H 0.05 3.13 7.89 -2.91 -0.02 3.11 16 14 C -0.04 -2.59 4.89 84.86 0.42 -2.17 16 15 N -0.92 -54.39 10.05 21.65 0.22 -54.18 16 16 Si 0.96 46.45 29.59 68.60 2.03 48.48 16 17 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 18 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 H 0.04 1.64 5.72 -2.39 -0.01 1.63 16 21 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.04 1.87 7.11 -2.39 -0.02 1.85 16 23 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 24 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.07 2.04 6.49 -2.39 -0.02 2.02 16 26 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.39 6.47 9.12 -74.06 -0.68 5.80 16 30 H 0.01 0.53 7.50 -2.39 -0.02 0.51 16 31 H 0.03 1.68 7.77 -2.39 -0.02 1.66 16 32 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -66.91 250.27 2.03 -64.88 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 0.42 Total: 7.20 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 3.17 Total: -14.03 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -1.61 Total: -87.78 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -1.98 Total: -18.76 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -66.91 2.03 -64.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606251027.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.886 kcal (2) G-P(sol) polarization free energy of solvation -66.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds