Wall clock time and date at job start Mon Mar 30 2020 02:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.70331 * 2 1 4 4 C 1.52761 * 109.50957 * 239.87464 * 2 1 3 5 5 C 1.53045 * 109.38033 * 185.70478 * 4 2 1 6 6 C 1.53047 * 109.53489 * 61.24411 * 5 4 2 7 7 H 1.09000 * 109.52473 * 58.59818 * 6 5 4 8 8 C 1.52995 * 109.49581 * 178.67910 * 6 5 4 9 9 O 1.42905 * 109.47245 * 184.83559 * 8 6 5 10 10 C 1.53191 * 109.31209 * 298.62988 * 6 5 4 11 11 N 1.46927 * 108.77473 * 54.63839 * 10 6 5 12 12 C 1.36934 * 120.63376 * 126.36814 * 11 10 6 13 13 H 1.08004 * 120.00090 * 211.24352 * 12 11 10 14 14 C 1.38811 * 120.00060 * 31.23794 * 12 11 10 15 15 N 1.31625 * 119.99955 * 23.05939 * 14 12 11 16 16 Si 1.86801 * 120.00150 * 203.06062 * 14 12 11 17 17 H 1.48504 * 109.46897 * 179.97438 * 16 14 12 18 18 H 1.48498 * 109.47145 * 300.00039 * 16 14 12 19 19 H 1.48501 * 109.47054 * 59.99997 * 16 14 12 20 20 H 1.09002 * 109.47696 * 299.65257 * 1 2 3 21 21 H 1.09006 * 109.46843 * 59.64734 * 1 2 3 22 22 H 1.09001 * 109.47204 * 179.64831 * 1 2 3 23 23 H 1.08997 * 109.56352 * 65.67746 * 4 2 1 24 24 H 1.08995 * 109.38972 * 305.63540 * 4 2 1 25 25 H 1.09001 * 109.46542 * 301.22498 * 5 4 2 26 26 H 1.09001 * 109.44967 * 181.25400 * 5 4 2 27 27 H 1.09002 * 109.47338 * 304.83545 * 8 6 5 28 28 H 1.09003 * 109.47461 * 64.83928 * 8 6 5 29 29 H 0.96698 * 113.99794 * 179.97438 * 9 8 6 30 30 H 1.09001 * 109.58743 * 294.84954 * 10 6 5 31 31 H 1.08998 * 109.69883 * 174.49139 * 10 6 5 32 32 H 0.97004 * 119.99634 * 5.80641 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0401 -0.7227 -1.2454 5 6 3.5638 -0.8463 -1.1725 6 6 3.9522 -1.6687 0.0584 7 1 3.4908 -2.6544 -0.0016 8 6 5.4738 -1.8195 0.1124 9 8 5.8290 -2.6802 1.1965 10 6 3.4644 -0.9518 1.3213 11 7 2.0225 -0.6994 1.1946 12 6 1.1535 -1.1132 2.1687 13 1 0.1450 -1.3981 1.9072 14 6 1.5687 -1.1667 3.4921 15 7 2.5808 -0.4277 3.8947 16 14 0.6911 -2.2873 4.7019 17 1 1.3223 -2.1620 6.0402 18 1 -0.7390 -1.8973 4.7900 19 1 0.7928 -3.6940 4.2369 20 1 -0.3634 0.5084 0.8931 21 1 -0.3633 0.5193 -0.8869 22 1 -0.3634 -1.0276 -0.0063 23 1 1.7633 -0.1568 -2.1349 24 1 1.5964 -1.7170 -1.2941 25 1 4.0058 0.1474 -1.0994 26 1 3.9312 -1.3420 -2.0710 27 1 5.8298 -2.2489 -0.8240 28 1 5.9309 -0.8411 0.2606 29 1 6.7809 -2.8216 1.2907 30 1 3.9928 -0.0048 1.4311 31 1 3.6505 -1.5775 2.1941 32 1 2.9824 0.2156 3.2898 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606251030.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:14 Heat of formation + Delta-G solvation = -47.334799 kcal Electronic energy + Delta-G solvation = -13685.436224 eV Core-core repulsion = 11452.889665 eV Total energy + Delta-G solvation = -2232.546560 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.31499 -36.19108 -33.32794 -32.26156 -29.61356 -27.38507 -25.16584 -23.44309 -21.94610 -20.15452 -19.02804 -16.92257 -16.79155 -15.21389 -14.36648 -13.99622 -13.52809 -13.43316 -13.36549 -13.11686 -12.19424 -11.94674 -11.34866 -11.17321 -11.06452 -10.66119 -10.51333 -10.22670 -10.15276 -9.97296 -9.76853 -9.63006 -9.55953 -8.95970 -8.25712 -6.72196 -5.91706 -3.13121 3.55537 3.60954 3.77759 4.62167 4.68697 5.22634 5.38292 5.52165 5.57629 5.59753 5.68602 5.81817 6.02936 6.11212 6.20646 6.34333 6.38948 6.44260 6.51238 6.61499 6.66974 6.81322 7.04705 7.12438 7.28636 7.42420 8.02096 8.17443 8.71588 9.26095 9.98730 10.45136 11.34530 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.027813 B = 0.015613 C = 0.010979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.491026 B = 1792.951833 C = 2549.634612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.167 3.833 3 H 0.020 0.980 4 C -0.128 4.128 5 C -0.102 4.102 6 C -0.110 4.110 7 H 0.072 0.928 8 C 0.085 3.915 9 O -0.564 6.564 10 C 0.166 3.834 11 N -0.595 5.595 12 C -0.347 4.347 13 H 0.057 0.943 14 C -0.023 4.023 15 N -0.916 5.916 16 Si 1.064 2.936 17 H -0.286 1.286 18 H -0.294 1.294 19 H -0.294 1.294 20 H 0.060 0.940 21 H 0.036 0.964 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.034 0.966 28 H 0.039 0.961 29 H 0.369 0.631 30 H 0.011 0.989 31 H 0.083 0.917 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.274 -1.218 -8.855 9.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.061 3.939 3 H 0.037 0.963 4 C -0.167 4.167 5 C -0.140 4.140 6 C -0.130 4.130 7 H 0.090 0.910 8 C 0.007 3.993 9 O -0.368 6.368 10 C 0.040 3.960 11 N -0.320 5.320 12 C -0.476 4.476 13 H 0.075 0.925 14 C -0.225 4.225 15 N -0.556 5.556 16 Si 0.894 3.106 17 H -0.212 1.212 18 H -0.221 1.221 19 H -0.221 1.221 20 H 0.079 0.921 21 H 0.055 0.945 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.214 0.786 30 H 0.029 0.971 31 H 0.102 0.898 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.590 -1.784 -7.181 7.840 hybrid contribution 0.646 0.615 -1.813 2.021 sum 3.236 -1.170 -8.995 9.630 Atomic orbital electron populations 1.21772 0.95979 1.01306 0.99986 1.20358 0.93106 0.93236 0.87229 0.96270 1.21960 0.95119 1.01087 0.98570 1.21367 0.96773 0.99335 0.96504 1.21744 0.92347 1.00656 0.98252 0.90992 1.22220 0.96742 0.92331 0.87999 1.86631 1.27695 1.69702 1.52770 1.20879 0.84039 0.96015 0.95114 1.44196 1.02616 1.65268 1.19874 1.19910 0.96720 1.43079 0.87918 0.92487 1.25855 1.00116 1.00597 0.95972 1.70760 1.25970 1.20974 1.37877 0.83546 0.74875 0.75960 0.76221 1.21166 1.22109 1.22101 0.92109 0.94510 0.92864 0.93064 0.92300 0.92753 0.93434 0.94810 0.94240 0.78587 0.97123 0.89825 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 7.95 37.16 0.30 -2.39 16 2 C 0.17 3.65 3.48 -67.82 -0.24 3.41 16 3 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.13 -2.35 5.35 -26.83 -0.14 -2.49 16 5 C -0.10 -1.78 5.17 -26.68 -0.14 -1.91 16 6 C -0.11 -2.20 2.58 -90.50 -0.23 -2.44 16 7 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 8 C 0.09 1.43 6.43 37.15 0.24 1.67 16 9 O -0.56 -10.04 13.31 -35.23 -0.47 -10.51 16 10 C 0.17 4.10 3.83 -3.71 -0.01 4.09 16 11 N -0.60 -15.45 2.81 -165.03 -0.46 -15.92 16 12 C -0.35 -9.89 8.44 -15.06 -0.13 -10.02 16 13 H 0.06 1.61 6.33 -52.48 -0.33 1.28 16 14 C -0.02 -0.68 4.71 -17.43 -0.08 -0.76 16 15 N -0.92 -28.43 12.52 55.49 0.69 -27.73 16 16 Si 1.06 26.23 29.98 -169.99 -5.10 21.14 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H 0.06 1.33 7.64 -51.93 -0.40 0.93 16 21 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.05 1.09 7.43 -51.93 -0.39 0.71 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.37 4.40 9.12 45.56 0.42 4.81 16 30 H 0.01 0.27 7.83 -51.93 -0.41 -0.13 16 31 H 0.08 2.39 6.34 -51.93 -0.33 2.06 16 32 H 0.27 8.41 6.70 -40.82 -0.27 8.13 16 LS Contribution 252.54 15.07 3.81 3.81 Total: -1.00 -32.38 252.54 -6.28 -38.66 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.31 Total: 1.39 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.44 Total: -10.84 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.23 Total: -43.65 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.47 Total: -10.51 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -5.10 Total: 21.14 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -32.38 -6.28 -38.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606251030.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.679 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds