Wall clock time and date at job start Mon Mar 30 2020 02:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.70331 * 2 1 4 4 C 1.52761 * 109.50957 * 239.87464 * 2 1 3 5 5 C 1.53045 * 109.38033 * 185.70478 * 4 2 1 6 6 C 1.53047 * 109.53489 * 61.24411 * 5 4 2 7 7 H 1.09000 * 109.52473 * 58.59818 * 6 5 4 8 8 C 1.52995 * 109.49581 * 178.67910 * 6 5 4 9 9 O 1.42905 * 109.47245 * 184.83559 * 8 6 5 10 10 C 1.53191 * 109.31209 * 298.62988 * 6 5 4 11 11 N 1.46927 * 108.77473 * 54.63839 * 10 6 5 12 12 C 1.36934 * 120.63376 * 126.36814 * 11 10 6 13 13 H 1.08004 * 120.00090 * 211.24352 * 12 11 10 14 14 C 1.38811 * 120.00060 * 31.23794 * 12 11 10 15 15 N 1.31625 * 119.99955 * 23.05939 * 14 12 11 16 16 Si 1.86801 * 120.00150 * 203.06062 * 14 12 11 17 17 H 1.48504 * 109.46897 * 179.97438 * 16 14 12 18 18 H 1.48498 * 109.47145 * 300.00039 * 16 14 12 19 19 H 1.48501 * 109.47054 * 59.99997 * 16 14 12 20 20 H 1.09002 * 109.47696 * 299.65257 * 1 2 3 21 21 H 1.09006 * 109.46843 * 59.64734 * 1 2 3 22 22 H 1.09001 * 109.47204 * 179.64831 * 1 2 3 23 23 H 1.08997 * 109.56352 * 65.67746 * 4 2 1 24 24 H 1.08995 * 109.38972 * 305.63540 * 4 2 1 25 25 H 1.09001 * 109.46542 * 301.22498 * 5 4 2 26 26 H 1.09001 * 109.44967 * 181.25400 * 5 4 2 27 27 H 1.09002 * 109.47338 * 304.83545 * 8 6 5 28 28 H 1.09003 * 109.47461 * 64.83928 * 8 6 5 29 29 H 0.96698 * 113.99794 * 179.97438 * 9 8 6 30 30 H 1.09001 * 109.58743 * 294.84954 * 10 6 5 31 31 H 1.08998 * 109.69883 * 174.49139 * 10 6 5 32 32 H 0.97004 * 119.99634 * 5.80641 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0401 -0.7227 -1.2454 5 6 3.5638 -0.8463 -1.1725 6 6 3.9522 -1.6687 0.0584 7 1 3.4908 -2.6544 -0.0016 8 6 5.4738 -1.8195 0.1124 9 8 5.8290 -2.6802 1.1965 10 6 3.4644 -0.9518 1.3213 11 7 2.0225 -0.6994 1.1946 12 6 1.1535 -1.1132 2.1687 13 1 0.1450 -1.3981 1.9072 14 6 1.5687 -1.1667 3.4921 15 7 2.5808 -0.4277 3.8947 16 14 0.6911 -2.2873 4.7019 17 1 1.3223 -2.1620 6.0402 18 1 -0.7390 -1.8973 4.7900 19 1 0.7928 -3.6940 4.2369 20 1 -0.3634 0.5084 0.8931 21 1 -0.3633 0.5193 -0.8869 22 1 -0.3634 -1.0276 -0.0063 23 1 1.7633 -0.1568 -2.1349 24 1 1.5964 -1.7170 -1.2941 25 1 4.0058 0.1474 -1.0994 26 1 3.9312 -1.3420 -2.0710 27 1 5.8298 -2.2489 -0.8240 28 1 5.9309 -0.8411 0.2606 29 1 6.7809 -2.8216 1.2907 30 1 3.9928 -0.0048 1.4311 31 1 3.6505 -1.5775 2.1941 32 1 2.9824 0.2156 3.2898 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606251030.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:13 Heat of formation + Delta-G solvation = -71.078378 kcal Electronic energy + Delta-G solvation = -13686.465823 eV Core-core repulsion = 11452.889665 eV Total energy + Delta-G solvation = -2233.576158 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.99287 -37.65244 -35.23013 -33.95662 -31.56801 -28.93102 -27.20271 -25.05784 -23.71209 -21.86135 -20.74532 -18.88940 -18.23372 -16.93995 -16.10530 -15.69844 -15.33691 -15.17037 -15.01690 -14.67217 -13.92075 -13.45949 -13.20153 -12.96371 -12.66833 -12.55226 -12.13669 -11.93858 -11.90481 -11.66098 -11.62433 -11.31097 -10.99190 -10.78350 -10.43434 -8.85629 -8.16269 -5.37289 1.54883 1.64432 1.81795 2.66660 3.24777 3.36219 3.54938 3.96777 4.05689 4.13945 4.20736 4.39610 4.54990 4.56027 4.66359 4.73598 4.79419 4.92523 4.93973 5.02157 5.12755 5.26404 5.36095 5.39018 5.45232 5.62523 5.94993 6.44168 6.97413 7.13746 7.85090 8.31081 9.05293 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.027813 B = 0.015613 C = 0.010979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.491026 B = 1792.951833 C = 2549.634612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.153 3.847 3 H 0.013 0.987 4 C -0.120 4.120 5 C -0.097 4.097 6 C -0.105 4.105 7 H 0.050 0.950 8 C 0.088 3.912 9 O -0.596 6.596 10 C 0.175 3.825 11 N -0.616 5.616 12 C -0.346 4.346 13 H 0.057 0.943 14 C -0.081 4.081 15 N -0.946 5.946 16 Si 1.112 2.888 17 H -0.293 1.293 18 H -0.272 1.272 19 H -0.284 1.284 20 H 0.033 0.967 21 H 0.077 0.923 22 H 0.045 0.955 23 H 0.088 0.912 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.393 0.607 30 H -0.007 1.007 31 H 0.036 0.964 32 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.220 -1.680 -11.060 11.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 H 0.030 0.970 4 C -0.159 4.159 5 C -0.135 4.135 6 C -0.125 4.125 7 H 0.069 0.931 8 C 0.010 3.990 9 O -0.404 6.404 10 C 0.049 3.951 11 N -0.341 5.341 12 C -0.476 4.476 13 H 0.074 0.926 14 C -0.277 4.277 15 N -0.588 5.588 16 Si 0.937 3.063 17 H -0.219 1.219 18 H -0.198 1.198 19 H -0.210 1.210 20 H 0.052 0.948 21 H 0.096 0.904 22 H 0.064 0.936 23 H 0.107 0.893 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.242 0.758 30 H 0.011 0.989 31 H 0.054 0.946 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.543 -2.245 -9.431 10.022 hybrid contribution 0.664 0.798 -1.176 1.569 sum 3.207 -1.446 -10.606 11.175 Atomic orbital electron populations 1.21695 0.94880 1.00995 1.00678 1.20682 0.94235 0.92987 0.87287 0.96958 1.21867 0.95733 1.00600 0.97720 1.21368 0.96149 0.99537 0.96397 1.21637 0.94765 0.99131 0.96991 0.93133 1.22217 0.94256 0.93100 0.89424 1.86573 1.30283 1.69950 1.53561 1.20647 0.83790 0.94684 0.95996 1.44508 1.02793 1.66143 1.20670 1.20183 0.97099 1.41630 0.88644 0.92557 1.27208 1.00606 1.01622 0.98263 1.70883 1.27856 1.22404 1.37671 0.82905 0.74944 0.74670 0.73830 1.21901 1.19765 1.21024 0.94767 0.90404 0.93628 0.89311 0.93042 0.92099 0.89504 0.90862 0.93470 0.75788 0.98885 0.94579 0.93976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 7.95 71.98 0.57 -4.31 16 2 C 0.15 6.54 3.48 44.83 0.16 6.69 16 3 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 4 C -0.12 -4.04 5.35 30.53 0.16 -3.87 16 5 C -0.10 -3.04 5.17 30.63 0.16 -2.89 16 6 C -0.11 -4.10 2.58 -10.72 -0.03 -4.13 16 7 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 8 C 0.09 2.76 6.43 71.98 0.46 3.23 16 9 O -0.60 -20.73 13.31 -148.98 -1.98 -22.71 16 10 C 0.17 8.89 3.83 86.36 0.33 9.22 16 11 N -0.62 -32.49 2.81 -676.02 -1.90 -34.39 16 12 C -0.35 -20.10 8.44 84.03 0.71 -19.39 16 13 H 0.06 3.22 6.33 -2.91 -0.02 3.21 16 14 C -0.08 -4.87 4.71 84.86 0.40 -4.47 16 15 N -0.95 -61.04 12.52 21.65 0.27 -60.77 16 16 Si 1.11 53.88 29.98 68.60 2.06 55.94 16 17 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 H 0.03 1.47 7.64 -2.39 -0.02 1.46 16 21 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 22 H 0.04 1.82 7.43 -2.39 -0.02 1.80 16 23 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 24 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.39 8.83 9.12 -74.06 -0.68 8.15 16 30 H -0.01 -0.36 7.83 -2.39 -0.02 -0.38 16 31 H 0.04 2.15 6.34 -2.39 -0.02 2.13 16 32 H 0.25 16.54 6.70 -92.71 -0.62 15.92 16 Total: -1.00 -72.80 252.54 1.93 -70.87 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.56 Total: 10.99 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 2.92 Total: -19.92 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -1.63 Total: -95.17 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -1.98 Total: -22.71 kcal Atomic # 14 Polarization: 53.88 SS G_CDS: 2.06 Total: 55.94 kcal Total: -72.80 1.93 -70.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606251030.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.204 kcal (2) G-P(sol) polarization free energy of solvation -72.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds