Wall clock time and date at job start Mon Mar 30 2020 02:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00017 * 2 1 4 4 H 1.08995 * 109.50053 * 30.00083 * 3 2 1 5 5 C 1.53044 * 109.52075 * 150.08233 * 3 2 1 6 6 C 1.53041 * 109.53820 * 181.33040 * 5 3 2 7 7 C 1.53187 * 109.31103 * 298.63628 * 6 5 3 8 8 H 1.09007 * 109.58599 * 174.42296 * 7 6 5 9 9 C 1.53004 * 109.58647 * 294.84067 * 7 6 5 10 10 N 1.46929 * 108.77986 * 54.63301 * 7 6 5 11 11 C 1.36938 * 120.63042 * 126.36967 * 10 7 6 12 12 H 1.07996 * 119.99734 * 331.83558 * 11 10 7 13 13 C 1.38811 * 120.00024 * 151.84426 * 11 10 7 14 14 N 1.31616 * 119.99703 * 343.06124 * 13 11 10 15 15 Si 1.86797 * 120.00214 * 163.06527 * 13 11 10 16 16 H 1.48501 * 109.46879 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47056 * 119.99572 * 15 13 11 18 18 H 1.48501 * 109.46841 * 239.99777 * 15 13 11 19 19 C 1.46919 * 118.73550 * 306.39078 * 10 7 6 20 20 H 1.08997 * 109.46776 * 59.99692 * 1 2 3 21 21 H 1.08998 * 109.47519 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47238 * 300.00360 * 1 2 3 23 23 H 1.09002 * 109.45952 * 301.34859 * 5 3 2 24 24 H 1.08997 * 109.46072 * 61.30971 * 5 3 2 25 25 H 1.09002 * 109.50008 * 178.67810 * 6 5 3 26 26 H 1.09010 * 109.52444 * 58.59964 * 6 5 3 27 27 H 1.09003 * 109.47202 * 179.29043 * 9 7 6 28 28 H 1.08995 * 109.47162 * 299.29341 * 9 7 6 29 29 H 1.08999 * 109.46597 * 59.29376 * 9 7 6 30 30 H 0.97002 * 120.00070 * 180.02562 * 14 13 11 31 31 H 1.08999 * 109.59183 * 293.81743 * 19 10 7 32 32 H 1.09002 * 109.58693 * 173.39493 * 19 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3454 1.9997 0.5137 5 6 3.3604 1.2641 0.7194 6 6 3.9680 2.6684 0.7488 7 6 4.1996 3.1503 -0.6868 8 1 4.5390 4.1860 -0.6743 9 6 5.2548 2.2698 -1.3594 10 7 2.9342 3.0555 -1.4275 11 6 2.4301 4.1432 -2.0894 12 1 2.6554 5.1400 -1.7401 13 6 1.6293 3.9645 -3.2090 14 7 1.6195 2.8057 -3.8329 15 14 0.5656 5.3688 -3.8303 16 1 0.7556 6.5565 -2.9594 17 1 0.9566 5.7075 -5.2223 18 1 -0.8613 4.9585 -3.8028 19 6 2.2198 1.7718 -1.4441 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 3.2173 0.9090 1.7400 24 1 4.0329 0.5884 0.1910 25 1 4.9184 2.6426 1.2818 26 1 3.2850 3.3503 1.2556 27 1 5.4090 2.6064 -2.3846 28 1 6.1926 2.3415 -0.8085 29 1 4.9145 1.2344 -1.3642 30 1 1.0602 2.6809 -4.6156 31 1 2.8100 1.0321 -1.9850 32 1 1.2529 1.8980 -1.9312 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606251292.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:15 Heat of formation + Delta-G solvation = -34.499682 kcal Electronic energy + Delta-G solvation = -13747.185558 eV Core-core repulsion = 11515.195571 eV Total energy + Delta-G solvation = -2231.989987 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.46153 -36.21894 -33.06517 -30.52381 -29.81943 -26.89532 -25.94684 -24.22288 -22.08209 -21.24854 -18.31556 -16.79315 -15.67297 -15.13351 -14.52907 -14.25174 -14.13671 -13.70961 -12.71055 -12.41240 -12.22980 -11.87555 -11.76157 -11.32098 -10.97304 -10.84995 -10.72403 -10.54830 -10.25398 -10.02696 -9.90186 -9.70076 -9.38655 -8.79581 -8.45535 -6.64947 -5.77478 -3.21565 3.36063 3.44229 3.46456 4.33087 4.51901 5.36312 5.49886 5.58649 5.69963 5.76290 5.77234 5.91198 6.04499 6.10081 6.21667 6.34841 6.36613 6.46363 6.50594 6.64909 6.75800 6.86062 7.03324 7.19818 7.34515 7.61658 7.80467 7.94385 8.46443 9.21764 9.85460 10.42583 11.29692 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.030360 B = 0.014561 C = 0.011197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.040889 B = 1922.477290 C = 2500.107703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.394 6.394 3 C 0.062 3.938 4 H 0.050 0.950 5 C -0.107 4.107 6 C -0.125 4.125 7 C 0.162 3.838 8 H 0.062 0.938 9 C -0.160 4.160 10 N -0.583 5.583 11 C -0.253 4.253 12 H 0.067 0.933 13 C 0.003 3.997 14 N -0.899 5.899 15 Si 0.900 3.100 16 H -0.277 1.277 17 H -0.290 1.290 18 H -0.289 1.289 19 C 0.157 3.843 20 H 0.043 0.957 21 H 0.075 0.925 22 H 0.032 0.968 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.253 0.747 31 H 0.026 0.974 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 -2.381 7.306 7.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.313 6.313 3 C 0.003 3.997 4 H 0.068 0.932 5 C -0.144 4.144 6 C -0.164 4.164 7 C 0.055 3.945 8 H 0.080 0.920 9 C -0.219 4.219 10 N -0.306 5.306 11 C -0.382 4.382 12 H 0.085 0.915 13 C -0.196 4.196 14 N -0.543 5.543 15 Si 0.730 3.270 16 H -0.202 1.202 17 H -0.217 1.217 18 H -0.216 1.216 19 C 0.031 3.969 20 H 0.062 0.938 21 H 0.093 0.907 22 H 0.050 0.950 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.932 -2.581 7.151 7.659 hybrid contribution -0.827 0.829 -0.464 1.259 sum 0.105 -1.752 6.688 6.914 Atomic orbital electron populations 1.22646 0.82117 1.01445 0.99837 1.87786 1.18866 1.29327 1.95290 1.23055 0.93622 0.82718 1.00298 0.93187 1.21493 0.96299 0.97629 0.99017 1.21986 0.99390 0.95945 0.99089 1.20573 0.87082 0.97228 0.89611 0.91976 1.22258 0.97717 1.01074 1.00896 1.44056 1.18995 1.08954 1.58595 1.19227 1.27048 0.86546 1.05421 0.91541 1.25074 1.01957 0.96897 0.95699 1.70059 1.40838 1.23662 1.19766 0.86256 0.80391 0.81929 0.78422 1.20213 1.21693 1.21613 1.21129 0.98874 0.86680 0.90199 0.93809 0.90669 0.94972 0.93312 0.91652 0.92546 0.92436 0.92858 0.94518 0.93151 0.93692 0.95575 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.82 101.05 1.09 1.70 16 2 O -0.39 -7.91 10.35 -35.23 -0.36 -8.28 16 3 C 0.06 1.29 2.76 -26.61 -0.07 1.22 16 4 H 0.05 1.05 7.79 -51.93 -0.40 0.65 16 5 C -0.11 -1.97 5.33 -26.69 -0.14 -2.11 16 6 C -0.12 -2.24 5.55 -26.61 -0.15 -2.39 16 7 C 0.16 3.42 3.29 -67.60 -0.22 3.20 16 8 H 0.06 1.30 7.93 -51.93 -0.41 0.89 16 9 C -0.16 -3.16 9.03 37.16 0.34 -2.82 16 10 N -0.58 -14.71 2.70 -164.78 -0.44 -15.15 16 11 C -0.25 -6.95 9.58 -15.06 -0.14 -7.09 16 12 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 13 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 14 N -0.90 -26.28 11.20 55.49 0.62 -25.66 16 15 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 C 0.16 3.90 4.51 -3.71 -0.02 3.88 16 20 H 0.04 0.77 8.02 -51.93 -0.42 0.35 16 21 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 22 H 0.03 0.48 8.09 -51.93 -0.42 0.06 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 1.23 6.49 -51.93 -0.34 0.89 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 1.02 5.72 -51.93 -0.30 0.72 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.03 0.70 7.50 -51.93 -0.39 0.31 16 32 H 0.09 2.36 5.94 -51.93 -0.31 2.05 16 LS Contribution 253.48 15.07 3.82 3.82 Total: -1.00 -29.47 253.48 -5.87 -35.34 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -5.07 Total: -2.29 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 0.60 Total: -4.44 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.18 Total: -40.82 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.36 Total: -8.28 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.47 -5.87 -35.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606251292.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.840 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds