Wall clock time and date at job start Mon Mar 30 2020 02:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00017 * 2 1 4 4 H 1.08995 * 109.50053 * 30.00083 * 3 2 1 5 5 C 1.53044 * 109.52075 * 150.08233 * 3 2 1 6 6 C 1.53041 * 109.53820 * 181.33040 * 5 3 2 7 7 C 1.53187 * 109.31103 * 298.63628 * 6 5 3 8 8 H 1.09007 * 109.58599 * 174.42296 * 7 6 5 9 9 C 1.53004 * 109.58647 * 294.84067 * 7 6 5 10 10 N 1.46929 * 108.77986 * 54.63301 * 7 6 5 11 11 C 1.36938 * 120.63042 * 126.36967 * 10 7 6 12 12 H 1.07996 * 119.99734 * 331.83558 * 11 10 7 13 13 C 1.38811 * 120.00024 * 151.84426 * 11 10 7 14 14 N 1.31616 * 119.99703 * 343.06124 * 13 11 10 15 15 Si 1.86797 * 120.00214 * 163.06527 * 13 11 10 16 16 H 1.48501 * 109.46879 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47056 * 119.99572 * 15 13 11 18 18 H 1.48501 * 109.46841 * 239.99777 * 15 13 11 19 19 C 1.46919 * 118.73550 * 306.39078 * 10 7 6 20 20 H 1.08997 * 109.46776 * 59.99692 * 1 2 3 21 21 H 1.08998 * 109.47519 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47238 * 300.00360 * 1 2 3 23 23 H 1.09002 * 109.45952 * 301.34859 * 5 3 2 24 24 H 1.08997 * 109.46072 * 61.30971 * 5 3 2 25 25 H 1.09002 * 109.50008 * 178.67810 * 6 5 3 26 26 H 1.09010 * 109.52444 * 58.59964 * 6 5 3 27 27 H 1.09003 * 109.47202 * 179.29043 * 9 7 6 28 28 H 1.08995 * 109.47162 * 299.29341 * 9 7 6 29 29 H 1.08999 * 109.46597 * 59.29376 * 9 7 6 30 30 H 0.97002 * 120.00070 * 180.02562 * 14 13 11 31 31 H 1.08999 * 109.59183 * 293.81743 * 19 10 7 32 32 H 1.09002 * 109.58693 * 173.39493 * 19 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3454 1.9997 0.5137 5 6 3.3604 1.2641 0.7194 6 6 3.9680 2.6684 0.7488 7 6 4.1996 3.1503 -0.6868 8 1 4.5390 4.1860 -0.6743 9 6 5.2548 2.2698 -1.3594 10 7 2.9342 3.0555 -1.4275 11 6 2.4301 4.1432 -2.0894 12 1 2.6554 5.1400 -1.7401 13 6 1.6293 3.9645 -3.2090 14 7 1.6195 2.8057 -3.8329 15 14 0.5656 5.3688 -3.8303 16 1 0.7556 6.5565 -2.9594 17 1 0.9566 5.7075 -5.2223 18 1 -0.8613 4.9585 -3.8028 19 6 2.2198 1.7718 -1.4441 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 3.2173 0.9090 1.7400 24 1 4.0329 0.5884 0.1910 25 1 4.9184 2.6426 1.2818 26 1 3.2850 3.3503 1.2556 27 1 5.4090 2.6064 -2.3846 28 1 6.1926 2.3415 -0.8085 29 1 4.9145 1.2344 -1.3642 30 1 1.0602 2.6809 -4.6156 31 1 2.8100 1.0321 -1.9850 32 1 1.2529 1.8980 -1.9312 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606251292.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:15 Heat of formation + Delta-G solvation = -53.300483 kcal Electronic energy + Delta-G solvation = -13748.000822 eV Core-core repulsion = 11515.195571 eV Total energy + Delta-G solvation = -2232.805251 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.12653 -37.84676 -34.98923 -32.20714 -31.71635 -28.58399 -27.50624 -26.02526 -23.86797 -22.92444 -20.06452 -18.70805 -17.34836 -16.92309 -16.14311 -15.96964 -15.73874 -15.48524 -14.52013 -14.08384 -13.82378 -13.62056 -13.26890 -12.98519 -12.90840 -12.64460 -12.37510 -12.16134 -12.09578 -11.83780 -11.51953 -11.42124 -11.05714 -10.58835 -10.42791 -8.67370 -7.87100 -5.34494 1.43934 1.45827 1.56622 2.48403 2.86194 3.27385 3.72224 4.05024 4.15088 4.22060 4.37729 4.48220 4.54288 4.59600 4.73927 4.78145 4.83909 4.96045 4.96943 5.12987 5.19227 5.29370 5.33036 5.42445 5.55731 5.66698 5.74694 6.30956 6.42397 7.13631 7.85708 8.37738 9.17937 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.030360 B = 0.014561 C = 0.011197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.040889 B = 1922.477290 C = 2500.107703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.406 6.406 3 C 0.071 3.929 4 H 0.049 0.951 5 C -0.103 4.103 6 C -0.114 4.114 7 C 0.150 3.850 8 H 0.062 0.938 9 C -0.150 4.150 10 N -0.600 5.600 11 C -0.262 4.262 12 H 0.070 0.930 13 C -0.051 4.051 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.264 1.264 17 H -0.293 1.293 18 H -0.291 1.291 19 C 0.170 3.830 20 H 0.023 0.977 21 H 0.105 0.895 22 H 0.052 0.948 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.024 0.976 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.249 0.751 31 H -0.007 1.007 32 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.342 -2.063 9.259 9.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.325 6.325 3 C 0.012 3.988 4 H 0.067 0.933 5 C -0.140 4.140 6 C -0.153 4.153 7 C 0.044 3.956 8 H 0.080 0.920 9 C -0.209 4.209 10 N -0.324 5.324 11 C -0.392 4.392 12 H 0.087 0.913 13 C -0.247 4.247 14 N -0.580 5.580 15 Si 0.793 3.207 16 H -0.188 1.188 17 H -0.220 1.220 18 H -0.218 1.218 19 C 0.043 3.957 20 H 0.041 0.959 21 H 0.124 0.876 22 H 0.070 0.930 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.011 0.989 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.364 -2.257 9.135 9.508 hybrid contribution -0.934 0.704 -1.066 1.583 sum 0.430 -1.554 8.068 8.228 Atomic orbital electron populations 1.22862 0.80396 1.03505 0.99779 1.87772 1.20825 1.28710 1.95187 1.22820 0.95391 0.83105 0.97478 0.93296 1.21493 0.94395 0.98033 1.00084 1.21892 1.01358 0.95302 0.96747 1.20872 0.85631 0.97821 0.91267 0.91983 1.22136 0.99223 0.99872 0.99699 1.44311 1.20910 1.08327 1.58838 1.19573 1.26844 0.87461 1.05305 0.91250 1.25831 1.03442 0.99188 0.96215 1.70221 1.41807 1.25729 1.20265 0.85241 0.78301 0.79517 0.77631 1.18806 1.21977 1.21769 1.20843 0.96305 0.86079 0.92430 0.95851 0.87642 0.92984 0.90434 0.92038 0.88689 0.92353 0.95704 0.90468 0.94155 0.94237 0.98851 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 10.82 113.37 1.23 2.21 16 2 O -0.41 -15.90 10.35 -148.98 -1.54 -17.44 16 3 C 0.07 2.91 2.76 30.67 0.08 2.99 16 4 H 0.05 2.01 7.79 -2.39 -0.02 1.99 16 5 C -0.10 -3.50 5.33 30.62 0.16 -3.34 16 6 C -0.11 -3.72 5.55 30.67 0.17 -3.55 16 7 C 0.15 6.12 3.29 44.97 0.15 6.27 16 8 H 0.06 2.50 7.93 -2.38 -0.02 2.49 16 9 C -0.15 -5.75 9.03 71.98 0.65 -5.10 16 10 N -0.60 -30.51 2.70 -675.23 -1.82 -32.34 16 11 C -0.26 -14.53 9.58 84.03 0.81 -13.72 16 12 H 0.07 3.73 7.88 -2.91 -0.02 3.71 16 13 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 14 N -0.93 -56.56 11.20 21.65 0.24 -56.32 16 15 Si 0.96 45.27 29.59 68.60 2.03 47.30 16 16 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 18 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 19 C 0.17 8.63 4.51 86.36 0.39 9.02 16 20 H 0.02 0.82 8.02 -2.39 -0.02 0.80 16 21 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 22 H 0.05 1.45 8.09 -2.39 -0.02 1.43 16 23 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.06 2.16 6.49 -2.39 -0.02 2.15 16 25 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.04 1.60 5.72 -2.39 -0.01 1.59 16 30 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 31 H -0.01 -0.37 7.50 -2.39 -0.02 -0.39 16 32 H 0.05 2.84 5.94 -2.39 -0.01 2.83 16 Total: -1.00 -64.57 253.48 4.03 -60.53 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 1.07 Total: 5.98 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 4.05 Total: -7.71 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -1.58 Total: -88.66 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -1.54 Total: -17.44 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -64.57 4.03 -60.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606251292.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.231 kcal (2) G-P(sol) polarization free energy of solvation -64.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds