Wall clock time and date at job start Mon Mar 30 2020 02:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00114 * 2 1 4 4 H 1.09001 * 109.49542 * 330.06265 * 3 2 1 5 5 C 1.53042 * 109.49658 * 209.99617 * 3 2 1 6 6 C 1.53039 * 109.53924 * 178.67937 * 5 3 2 7 7 C 1.53195 * 109.31135 * 61.36670 * 6 5 3 8 8 H 1.09005 * 109.58589 * 65.29450 * 7 6 5 9 9 C 1.52994 * 109.58772 * 185.57901 * 7 6 5 10 10 N 1.46922 * 108.89314 * 305.43828 * 7 6 5 11 11 C 1.36936 * 120.62887 * 233.53844 * 10 7 6 12 12 H 1.07996 * 120.00273 * 29.68896 * 11 10 7 13 13 C 1.38813 * 119.99859 * 209.68972 * 11 10 7 14 14 N 1.31618 * 120.00318 * 12.18607 * 13 11 10 15 15 Si 1.86805 * 120.00046 * 192.18470 * 13 11 10 16 16 H 1.48503 * 109.46903 * 59.99826 * 15 13 11 17 17 H 1.48495 * 109.47196 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47033 * 300.00346 * 15 13 11 19 19 C 1.46965 * 118.71686 * 53.35496 * 10 7 6 20 20 H 1.09005 * 109.47267 * 300.00441 * 1 2 3 21 21 H 1.09002 * 109.47369 * 60.00371 * 1 2 3 22 22 H 1.09000 * 109.47673 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46017 * 58.65952 * 5 3 2 24 24 H 1.09002 * 109.45309 * 298.69834 * 5 3 2 25 25 H 1.09000 * 109.49690 * 301.41469 * 6 5 3 26 26 H 1.09000 * 109.49766 * 181.31920 * 6 5 3 27 27 H 1.08995 * 109.47416 * 59.71623 * 9 7 6 28 28 H 1.09001 * 109.47234 * 179.71796 * 9 7 6 29 29 H 1.09004 * 109.46966 * 299.71430 * 9 7 6 30 30 H 0.97000 * 120.00096 * 180.02562 * 14 13 11 31 31 H 1.08997 * 109.59289 * 186.78500 * 19 10 7 32 32 H 1.08999 * 109.58483 * 66.49850 * 19 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3447 2.0000 -0.5128 5 6 3.3594 1.2639 -0.7212 6 6 3.9675 2.6679 -0.7507 7 6 4.2014 3.1489 0.6849 8 1 4.9553 2.5225 1.1619 9 6 4.6785 4.6025 0.6675 10 7 2.9387 3.0538 1.4301 11 6 2.4379 4.1408 2.0956 12 1 2.6422 5.1373 1.7330 13 6 1.6675 3.9617 3.2364 14 7 1.6145 2.7812 3.8161 15 14 0.7060 5.3961 3.9488 16 1 -0.2606 5.8949 2.9378 17 1 -0.0304 4.9468 5.1575 18 1 1.6442 6.4867 4.3170 19 6 2.2219 1.7710 1.4440 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.2148 0.9093 -1.7418 24 1 4.0322 0.5876 -0.1939 25 1 3.2839 3.3500 -1.2561 26 1 4.9173 2.6419 -1.2849 27 1 3.9234 5.2270 0.1902 28 1 4.8394 4.9443 1.6899 29 1 5.6126 4.6716 0.1100 30 1 1.0759 2.6561 4.6131 31 1 1.2557 1.8974 1.9325 32 1 2.8103 1.0294 1.9844 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606251295.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:20 Heat of formation + Delta-G solvation = -34.178465 kcal Electronic energy + Delta-G solvation = -13689.881513 eV Core-core repulsion = 11457.905455 eV Total energy + Delta-G solvation = -2231.976058 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.34853 -36.23374 -32.94322 -31.13139 -29.82245 -26.58945 -25.65926 -24.52150 -22.07488 -20.51832 -19.14764 -16.52967 -15.69625 -15.31345 -14.52549 -14.21066 -13.72335 -13.52817 -13.24722 -12.66306 -12.16982 -11.94805 -11.49292 -11.10859 -10.89551 -10.87952 -10.70783 -10.40791 -10.37911 -10.16690 -9.93295 -9.59409 -9.47933 -8.77732 -8.44065 -6.59238 -5.74429 -3.21753 3.37999 3.43766 3.44334 4.33807 4.52861 5.38297 5.47539 5.58870 5.67361 5.75927 5.81882 5.94347 6.02224 6.10854 6.22053 6.34573 6.36280 6.46498 6.48133 6.61281 6.74457 6.85964 7.08633 7.17290 7.33709 7.65264 7.82329 7.95965 8.49415 9.24202 9.87424 10.44850 11.32784 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.029321 B = 0.015022 C = 0.010804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.704315 B = 1863.461861 C = 2591.107132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.394 6.394 3 C 0.062 3.938 4 H 0.050 0.950 5 C -0.106 4.106 6 C -0.127 4.127 7 C 0.164 3.836 8 H 0.026 0.974 9 C -0.136 4.136 10 N -0.586 5.586 11 C -0.251 4.251 12 H 0.070 0.930 13 C 0.002 3.998 14 N -0.904 5.904 15 Si 0.902 3.098 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.282 1.282 19 C 0.157 3.843 20 H 0.044 0.956 21 H 0.031 0.969 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.038 0.962 30 H 0.254 0.746 31 H 0.090 0.910 32 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 -1.360 -7.401 7.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.313 6.313 3 C 0.003 3.997 4 H 0.068 0.932 5 C -0.144 4.144 6 C -0.166 4.166 7 C 0.058 3.942 8 H 0.044 0.956 9 C -0.194 4.194 10 N -0.310 5.310 11 C -0.381 4.381 12 H 0.088 0.912 13 C -0.197 4.197 14 N -0.548 5.548 15 Si 0.732 3.268 16 H -0.211 1.211 17 H -0.216 1.216 18 H -0.208 1.208 19 C 0.031 3.969 20 H 0.062 0.938 21 H 0.050 0.950 22 H 0.093 0.907 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.808 -1.570 -7.232 7.445 hybrid contribution -0.802 0.861 0.449 1.259 sum 0.007 -0.710 -6.783 6.820 Atomic orbital electron populations 1.22644 0.82115 1.01436 0.99837 1.87785 1.18872 1.29315 1.95293 1.23069 0.93553 0.82722 1.00383 0.93191 1.21462 0.96346 0.97521 0.99050 1.22063 0.99397 0.95805 0.99337 1.20499 0.88952 0.94669 0.90107 0.95633 1.21806 0.98768 0.97070 1.01736 1.44031 1.19599 1.09129 1.58283 1.19157 1.28169 0.86991 1.03742 0.91218 1.25147 1.01845 0.96666 0.96023 1.69994 1.42295 1.22002 1.20551 0.86379 0.80052 0.82059 0.78318 1.21083 1.21638 1.20836 1.21180 0.99181 0.86480 0.90078 0.93766 0.95009 0.90680 0.93215 0.92010 0.92361 0.92619 0.92886 0.92035 0.94285 0.93604 0.89206 0.95763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.82 101.05 1.09 1.70 16 2 O -0.39 -7.97 10.35 -35.23 -0.36 -8.33 16 3 C 0.06 1.30 2.76 -26.61 -0.07 1.22 16 4 H 0.05 1.06 7.79 -51.93 -0.40 0.66 16 5 C -0.11 -1.98 5.53 -26.69 -0.15 -2.13 16 6 C -0.13 -2.30 5.37 -26.61 -0.14 -2.44 16 7 C 0.16 3.50 3.49 -67.60 -0.24 3.27 16 8 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 9 C -0.14 -2.61 7.95 37.15 0.30 -2.31 16 10 N -0.59 -14.88 3.00 -164.75 -0.49 -15.38 16 11 C -0.25 -6.82 8.59 -15.06 -0.13 -6.95 16 12 H 0.07 1.83 6.21 -52.49 -0.33 1.51 16 13 C 0.00 0.05 5.03 -17.43 -0.09 -0.04 16 14 N -0.90 -26.48 11.03 55.49 0.61 -25.87 16 15 Si 0.90 21.70 29.57 -169.99 -5.03 16.68 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.16 3.94 4.89 -3.69 -0.02 3.92 16 20 H 0.04 0.78 8.03 -51.93 -0.42 0.36 16 21 H 0.03 0.47 8.09 -51.93 -0.42 0.06 16 22 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 1.02 7.42 -51.93 -0.39 0.63 16 28 H 0.06 1.26 7.64 -51.93 -0.40 0.87 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.09 2.49 5.93 -51.93 -0.31 2.18 16 32 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 254.27 15.07 3.83 3.83 Total: -1.00 -29.50 254.27 -6.06 -35.57 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -5.17 Total: -2.73 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 0.55 Total: -3.77 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.12 Total: -41.24 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: -0.36 Total: -8.33 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.50 -6.06 -35.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606251295.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.387 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds