Wall clock time and date at job start Mon Mar 30 2020 02:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 108.48733 * 2 1 4 4 C 1.47697 * 108.64172 * 117.93387 * 2 1 3 5 5 C 1.54870 * 109.67798 * 181.88825 * 4 2 1 6 6 N 1.44459 * 109.32976 * 290.10986 * 5 4 2 7 7 C 1.36936 * 118.51028 * 268.92652 * 6 5 4 8 8 H 1.08002 * 119.99711 * 26.81058 * 7 6 5 9 9 C 1.38814 * 119.99979 * 206.80549 * 7 6 5 10 10 N 1.31624 * 119.99906 * 16.41149 * 9 7 6 11 11 Si 1.86795 * 119.99993 * 196.40608 * 9 7 6 12 12 H 1.48501 * 109.47284 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46871 * 120.00422 * 11 9 7 14 14 H 1.48494 * 109.47350 * 240.00283 * 11 9 7 15 15 C 1.48184 * 122.97446 * 88.92815 * 6 5 4 16 16 C 1.54290 * 110.69760 * 318.77102 * 15 6 5 17 17 H 1.09004 * 109.33669 * 200.53780 * 16 15 6 18 18 C 1.53004 * 109.40617 * 80.73824 * 16 15 6 19 19 O 1.40521 * 109.86355 * 320.61486 * 16 15 6 20 20 H 1.09000 * 109.47262 * 177.94225 * 1 2 3 21 21 H 1.08991 * 109.47205 * 297.94521 * 1 2 3 22 22 H 1.09000 * 109.46792 * 57.94571 * 1 2 3 23 23 H 1.08992 * 109.43453 * 301.95712 * 4 2 1 24 24 H 1.08998 * 109.43403 * 61.87024 * 4 2 1 25 25 H 1.09000 * 109.49334 * 50.06718 * 5 4 2 26 26 H 1.08996 * 109.49330 * 170.12066 * 5 4 2 27 27 H 0.96994 * 119.99845 * 179.97438 * 10 9 7 28 28 H 1.08998 * 109.23051 * 198.45536 * 15 6 5 29 29 H 1.09005 * 109.23215 * 79.08745 * 15 6 5 30 30 H 1.08999 * 109.46582 * 300.13481 * 18 16 15 31 31 H 1.08991 * 109.47107 * 180.13462 * 18 16 15 32 32 H 1.09003 * 109.47042 * 60.13319 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8756 1.0337 0.0000 4 6 2.0021 -0.6556 1.2364 5 6 3.5498 -0.6264 1.2839 6 7 4.0760 -1.5172 0.2758 7 6 4.3278 -2.8184 0.6204 8 1 3.7715 -3.2821 1.4217 9 6 5.2979 -3.5414 -0.0601 10 7 6.1888 -2.9143 -0.7987 11 14 5.3390 -5.4042 0.0724 12 1 4.2375 -5.8620 0.9569 13 1 5.1698 -6.0002 -1.2772 14 1 6.6420 -5.8313 0.6422 15 6 4.3557 -1.0868 -1.1143 16 6 3.2344 -0.1640 -1.6355 17 1 3.2524 -0.1543 -2.7253 18 6 3.4592 1.2555 -1.1106 19 8 1.9858 -0.6331 -1.1932 20 1 -0.3634 -1.0270 -0.0369 21 1 -0.3633 0.4815 0.9078 22 1 -0.3633 0.5454 -0.8710 23 1 1.6026 -0.1276 2.1022 24 1 1.6589 -1.6900 1.2522 25 1 3.9005 0.3877 1.0921 26 1 3.8897 -0.9487 2.2681 27 1 6.8669 -3.4195 -1.2739 28 1 4.4245 -1.9657 -1.7553 29 1 5.3039 -0.5496 -1.1399 30 1 3.4481 1.2458 -0.0207 31 1 2.6663 1.9078 -1.4762 32 1 4.4234 1.6240 -1.4610 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606251316.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:01 Heat of formation + Delta-G solvation = -28.749369 kcal Electronic energy + Delta-G solvation = -13977.535623 eV Core-core repulsion = 11745.794988 eV Total energy + Delta-G solvation = -2231.740635 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.91463 -36.82694 -34.93004 -33.44910 -31.45862 -29.50178 -27.52371 -25.66892 -24.12991 -21.71366 -20.48400 -18.87937 -18.05351 -17.01546 -16.27641 -15.87775 -15.18603 -14.81973 -14.62421 -14.13837 -13.83746 -13.51236 -13.15677 -12.93627 -12.82006 -12.65513 -12.59490 -12.32639 -12.20594 -11.93630 -11.72596 -11.20925 -10.71743 -10.53516 -10.08049 -8.64220 -7.85368 -5.30639 1.42079 1.44505 1.54758 2.50629 3.06066 3.27593 3.72707 4.00468 4.08792 4.23652 4.35469 4.39947 4.48625 4.70636 4.77509 4.81344 4.92180 4.97667 5.01060 5.15675 5.24427 5.27885 5.33587 5.46009 5.57783 5.64710 5.72171 6.40401 6.73062 7.18032 7.95517 8.33609 9.19107 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.045286 B = 0.012543 C = 0.011373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.142433 B = 2231.756162 C = 2461.437744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.066 3.934 3 H 0.086 0.914 4 C -0.161 4.161 5 C 0.140 3.860 6 N -0.602 5.602 7 C -0.262 4.262 8 H 0.058 0.942 9 C -0.050 4.050 10 N -0.935 5.935 11 Si 0.962 3.038 12 H -0.270 1.270 13 H -0.292 1.292 14 H -0.289 1.289 15 C 0.170 3.830 16 C 0.064 3.936 17 H 0.089 0.911 18 C -0.186 4.186 19 O -0.383 6.383 20 H 0.043 0.957 21 H 0.089 0.911 22 H 0.063 0.937 23 H 0.094 0.906 24 H 0.037 0.963 25 H 0.058 0.942 26 H 0.038 0.962 27 H 0.248 0.752 28 H 0.031 0.969 29 H 0.011 0.989 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.507 8.531 1.197 12.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.010 3.990 3 H 0.103 0.897 4 C -0.201 4.201 5 C 0.014 3.986 6 N -0.324 5.324 7 C -0.393 4.393 8 H 0.076 0.924 9 C -0.245 4.245 10 N -0.581 5.581 11 Si 0.791 3.209 12 H -0.195 1.195 13 H -0.219 1.219 14 H -0.216 1.216 15 C 0.045 3.955 16 C 0.005 3.995 17 H 0.106 0.894 18 C -0.243 4.243 19 O -0.302 6.302 20 H 0.062 0.938 21 H 0.108 0.892 22 H 0.082 0.918 23 H 0.112 0.888 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.029 0.971 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.496 8.360 1.022 11.963 hybrid contribution 0.673 -1.255 -0.038 1.424 sum -7.823 7.105 0.983 10.613 Atomic orbital electron populations 1.21888 0.93038 1.01917 1.03062 1.21324 0.95408 0.97422 0.84880 0.89659 1.22153 0.98569 1.00719 0.98675 1.21104 0.92350 0.93582 0.91547 1.43815 1.74761 1.07758 1.06059 1.19499 1.13319 0.89335 1.17133 0.92448 1.25718 0.95525 1.02230 1.01072 1.70206 1.17080 1.35000 1.35850 0.85286 0.77296 0.81240 0.77119 1.19492 1.21867 1.21571 1.21520 0.93191 0.95826 0.84955 1.22634 0.84552 0.93910 0.98407 0.89371 1.22730 1.02954 0.95606 1.02975 1.87441 1.34879 1.66161 1.41741 0.93813 0.89232 0.91805 0.88816 0.94413 0.92415 0.94337 0.94253 0.95052 0.97070 0.90490 0.90174 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.43 71.98 0.68 -3.01 16 2 C 0.07 2.16 2.42 28.93 0.07 2.23 16 3 H 0.09 2.41 4.51 -2.39 -0.01 2.40 16 4 C -0.16 -5.67 5.20 29.57 0.15 -5.51 16 5 C 0.14 5.89 5.61 87.40 0.49 6.38 16 6 N -0.60 -31.28 2.58 -696.46 -1.80 -33.08 16 7 C -0.26 -15.15 9.41 84.03 0.79 -14.36 16 8 H 0.06 3.30 7.88 -2.91 -0.02 3.28 16 9 C -0.05 -2.94 4.85 84.86 0.41 -2.53 16 10 N -0.93 -56.93 11.09 21.65 0.24 -56.69 16 11 Si 0.96 47.04 29.58 68.60 2.03 49.07 16 12 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 13 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 14 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 15 C 0.17 8.59 4.57 86.49 0.40 8.98 16 16 C 0.06 2.52 3.87 31.03 0.12 2.64 16 17 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 18 C -0.19 -5.65 7.53 71.98 0.54 -5.11 16 19 O -0.38 -15.58 9.82 -144.89 -1.42 -17.00 16 20 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 21 H 0.09 1.80 8.13 -2.39 -0.02 1.78 16 22 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.09 2.57 8.13 -2.39 -0.02 2.55 16 24 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.06 2.19 5.24 -2.39 -0.01 2.18 16 26 H 0.04 1.65 7.97 -2.39 -0.02 1.63 16 27 H 0.25 14.61 8.31 -92.71 -0.77 13.83 16 28 H 0.03 1.81 6.48 -2.39 -0.02 1.79 16 29 H 0.01 0.61 7.85 -2.38 -0.02 0.59 16 30 H 0.08 2.37 3.32 -2.39 -0.01 2.37 16 31 H 0.08 1.98 7.77 -2.39 -0.02 1.96 16 32 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 Total: -1.00 -66.73 243.60 3.79 -62.94 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 1.09 Total: 5.05 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 3.65 Total: -10.28 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -1.56 Total: -89.77 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -1.42 Total: -17.00 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -66.73 3.79 -62.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606251316.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.190 kcal (2) G-P(sol) polarization free energy of solvation -66.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds