Wall clock time and date at job start Mon Mar 30 2020 02:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 108.59999 * 2 1 4 4 C 1.47689 * 108.64172 * 242.11767 * 2 1 3 5 5 C 1.54879 * 109.67497 * 178.11052 * 4 2 1 6 6 N 1.44380 * 109.31632 * 69.87808 * 5 4 2 7 7 C 1.36939 * 118.45489 * 91.08960 * 6 5 4 8 8 H 1.08000 * 119.99861 * 333.04283 * 7 6 5 9 9 C 1.38815 * 119.99904 * 153.03967 * 7 6 5 10 10 N 1.31614 * 119.99790 * 344.04203 * 9 7 6 11 11 Si 1.86803 * 119.99728 * 164.03550 * 9 7 6 12 12 H 1.48493 * 109.47073 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46507 * 120.00412 * 11 9 7 14 14 H 1.48498 * 109.47197 * 240.00082 * 11 9 7 15 15 C 1.48186 * 123.03209 * 271.05958 * 6 5 4 16 16 C 1.54284 * 110.66331 * 41.23680 * 15 6 5 17 17 H 1.09004 * 109.40571 * 159.52419 * 16 15 6 18 18 C 1.53001 * 109.40796 * 279.36538 * 16 15 6 19 19 O 1.40528 * 109.86853 * 39.40510 * 16 15 6 20 20 H 1.09001 * 109.47049 * 301.99910 * 1 2 3 21 21 H 1.09004 * 109.47048 * 61.99767 * 1 2 3 22 22 H 1.08995 * 109.47544 * 181.99909 * 1 2 3 23 23 H 1.09000 * 109.44343 * 298.17741 * 4 2 1 24 24 H 1.09006 * 109.43117 * 58.05473 * 4 2 1 25 25 H 1.09007 * 109.49272 * 189.85411 * 5 4 2 26 26 H 1.08997 * 109.49658 * 309.90948 * 5 4 2 27 27 H 0.97009 * 119.99822 * 179.97438 * 10 9 7 28 28 H 1.09006 * 109.23027 * 280.94710 * 15 6 5 29 29 H 1.08995 * 109.23207 * 161.53019 * 15 6 5 30 30 H 1.08997 * 109.47303 * 59.88959 * 18 16 15 31 31 H 1.09001 * 109.47188 * 179.89529 * 18 16 15 32 32 H 1.09003 * 109.46616 * 299.89118 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8777 1.0330 0.0000 4 6 2.0021 -0.6544 -1.2369 5 6 3.5499 -0.6251 -1.2843 6 7 4.0755 -1.5162 -0.2773 7 6 4.3271 -2.8169 -0.6241 8 1 3.7692 -3.2799 -1.4246 9 6 5.2992 -3.5402 0.0533 10 7 6.1860 -2.9142 0.7975 11 14 5.3485 -5.4019 -0.0914 12 1 4.2511 -5.8584 -0.9817 13 1 6.6544 -5.8195 -0.6619 14 1 5.1795 -6.0076 1.2538 15 6 4.3556 -1.0881 1.1134 16 6 3.2344 -0.1658 1.6355 17 1 3.2517 -0.1557 2.7253 18 6 3.4581 1.2538 1.1104 19 8 1.9857 -0.6343 1.1927 20 1 -0.3633 0.5446 0.8715 21 1 -0.3633 0.4825 -0.9074 22 1 -0.3634 -1.0270 0.0358 23 1 1.6582 -1.6886 -1.2543 24 1 1.6026 -0.1254 -2.1023 25 1 3.8898 -0.9470 -2.2688 26 1 3.9006 0.3888 -1.0921 27 1 6.8652 -3.4197 1.2712 28 1 5.3038 -0.5509 1.1396 29 1 4.4238 -1.9679 1.7532 30 1 3.4457 1.2443 0.0205 31 1 2.6654 1.9060 1.4771 32 1 4.4226 1.6225 1.4596 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606251317.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:03 Heat of formation + Delta-G solvation = -8.867129 kcal Electronic energy + Delta-G solvation = -13977.685870 eV Core-core repulsion = 11746.807394 eV Total energy + Delta-G solvation = -2230.878476 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.35034 -34.93071 -33.41115 -31.49344 -29.85882 -27.92187 -25.68821 -23.84940 -22.59960 -19.85220 -19.00775 -17.03698 -16.31442 -15.20496 -14.55097 -14.18729 -13.39468 -13.03681 -12.85372 -12.70281 -12.30598 -12.01414 -11.62592 -11.38158 -11.29954 -10.91891 -10.78136 -10.65153 -10.38159 -10.11151 -9.79872 -9.51928 -9.18663 -8.57719 -8.29737 -6.57712 -5.70286 -3.12920 3.42228 3.49873 3.52722 4.48334 4.59028 5.34071 5.46296 5.48447 5.57456 5.68636 5.74686 5.81968 5.89240 6.01646 6.13805 6.27489 6.33326 6.42544 6.53764 6.55410 6.69466 6.75421 6.86915 7.16145 7.34939 7.68936 7.89208 8.23096 8.55284 9.30932 9.98462 10.43186 11.37197 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.045353 B = 0.012539 C = 0.011366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.226080 B = 2232.558454 C = 2462.950032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 H 0.063 0.937 4 C -0.174 4.174 5 C 0.150 3.850 6 N -0.585 5.585 7 C -0.251 4.251 8 H 0.063 0.937 9 C 0.002 3.998 10 N -0.907 5.907 11 Si 0.900 3.100 12 H -0.278 1.278 13 H -0.292 1.292 14 H -0.290 1.290 15 C 0.163 3.837 16 C 0.059 3.941 17 H 0.078 0.922 18 C -0.197 4.197 19 O -0.359 6.359 20 H 0.051 0.949 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.038 0.962 27 H 0.251 0.749 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.995 7.218 -0.674 10.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 H 0.081 0.919 4 C -0.214 4.214 5 C 0.022 3.978 6 N -0.306 5.306 7 C -0.381 4.381 8 H 0.081 0.919 9 C -0.196 4.196 10 N -0.552 5.552 11 Si 0.730 3.270 12 H -0.203 1.203 13 H -0.219 1.219 14 H -0.216 1.216 15 C 0.038 3.962 16 C 0.000 4.000 17 H 0.096 0.904 18 C -0.254 4.254 19 O -0.278 6.278 20 H 0.070 0.930 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.955 7.027 -0.476 9.898 hybrid contribution 0.223 -0.882 -0.085 0.914 sum -6.732 6.145 -0.561 9.132 Atomic orbital electron populations 1.21919 0.95555 1.02203 1.00915 1.21009 0.93380 0.96786 0.86602 0.91942 1.22296 1.01206 1.01721 0.96217 1.20847 0.90400 0.93430 0.93098 1.43564 1.74358 1.07852 1.04854 1.19239 1.13618 0.87760 1.17454 0.91914 1.25001 0.95541 0.98265 1.00748 1.70062 1.16649 1.33762 1.34743 0.86252 0.77220 0.86098 0.77386 1.20337 1.21874 1.21633 1.21724 0.91912 0.96927 0.85669 1.22805 0.86308 0.93052 0.97829 0.90447 1.22870 1.01341 0.97786 1.03357 1.87445 1.35082 1.64944 1.40343 0.93033 0.92201 0.92352 0.91457 0.92686 0.93441 0.94399 0.93849 0.94844 0.90688 0.90202 0.93269 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.43 37.16 0.35 -1.85 16 2 C 0.08 1.42 2.42 -29.30 -0.07 1.35 16 3 H 0.06 1.03 4.49 -51.93 -0.23 0.79 16 4 C -0.17 -3.25 5.20 -28.31 -0.15 -3.40 16 5 C 0.15 3.22 5.61 -4.18 -0.02 3.20 16 6 N -0.58 -15.03 2.58 -171.54 -0.44 -15.48 16 7 C -0.25 -7.10 9.41 -15.06 -0.14 -7.24 16 8 H 0.06 1.77 7.88 -52.49 -0.41 1.35 16 9 C 0.00 0.07 4.86 -17.43 -0.08 -0.02 16 10 N -0.91 -26.80 11.07 55.49 0.61 -26.18 16 11 Si 0.90 22.42 29.58 -169.99 -5.03 17.39 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 15 C 0.16 4.02 4.57 -2.44 -0.01 4.01 16 16 C 0.06 1.20 3.88 -26.06 -0.10 1.10 16 17 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 18 C -0.20 -3.29 7.53 37.16 0.28 -3.01 16 19 O -0.36 -7.59 9.82 -34.10 -0.33 -7.92 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 24 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 25 H 0.05 1.03 7.96 -51.93 -0.41 0.61 16 26 H 0.04 0.76 5.24 -51.93 -0.27 0.49 16 27 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.03 0.87 7.85 -51.93 -0.41 0.46 16 29 H 0.07 2.09 6.48 -51.93 -0.34 1.75 16 30 H 0.08 1.37 3.31 -51.93 -0.17 1.19 16 31 H 0.05 0.72 7.77 -51.93 -0.40 0.32 16 32 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 LS Contribution 243.55 15.07 3.67 3.67 Total: -1.00 -30.37 243.55 -6.22 -36.58 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -4.74 Total: -2.19 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 0.05 Total: -5.87 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.17 Total: -41.66 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.33 Total: -7.92 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.39 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.37 -6.22 -36.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606251317.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.716 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds