Wall clock time and date at job start Mon Mar 30 2020 02:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 108.59999 * 2 1 4 4 C 1.47689 * 108.64172 * 242.11767 * 2 1 3 5 5 C 1.54879 * 109.67497 * 178.11052 * 4 2 1 6 6 N 1.44380 * 109.31632 * 69.87808 * 5 4 2 7 7 C 1.36939 * 118.45489 * 91.08960 * 6 5 4 8 8 H 1.08000 * 119.99861 * 333.04283 * 7 6 5 9 9 C 1.38815 * 119.99904 * 153.03967 * 7 6 5 10 10 N 1.31614 * 119.99790 * 344.04203 * 9 7 6 11 11 Si 1.86803 * 119.99728 * 164.03550 * 9 7 6 12 12 H 1.48493 * 109.47073 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46507 * 120.00412 * 11 9 7 14 14 H 1.48498 * 109.47197 * 240.00082 * 11 9 7 15 15 C 1.48186 * 123.03209 * 271.05958 * 6 5 4 16 16 C 1.54284 * 110.66331 * 41.23680 * 15 6 5 17 17 H 1.09004 * 109.40571 * 159.52419 * 16 15 6 18 18 C 1.53001 * 109.40796 * 279.36538 * 16 15 6 19 19 O 1.40528 * 109.86853 * 39.40510 * 16 15 6 20 20 H 1.09001 * 109.47049 * 301.99910 * 1 2 3 21 21 H 1.09004 * 109.47048 * 61.99767 * 1 2 3 22 22 H 1.08995 * 109.47544 * 181.99909 * 1 2 3 23 23 H 1.09000 * 109.44343 * 298.17741 * 4 2 1 24 24 H 1.09006 * 109.43117 * 58.05473 * 4 2 1 25 25 H 1.09007 * 109.49272 * 189.85411 * 5 4 2 26 26 H 1.08997 * 109.49658 * 309.90948 * 5 4 2 27 27 H 0.97009 * 119.99822 * 179.97438 * 10 9 7 28 28 H 1.09006 * 109.23027 * 280.94710 * 15 6 5 29 29 H 1.08995 * 109.23207 * 161.53019 * 15 6 5 30 30 H 1.08997 * 109.47303 * 59.88959 * 18 16 15 31 31 H 1.09001 * 109.47188 * 179.89529 * 18 16 15 32 32 H 1.09003 * 109.46616 * 299.89118 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8777 1.0330 0.0000 4 6 2.0021 -0.6544 -1.2369 5 6 3.5499 -0.6251 -1.2843 6 7 4.0755 -1.5162 -0.2773 7 6 4.3271 -2.8169 -0.6241 8 1 3.7692 -3.2799 -1.4246 9 6 5.2992 -3.5402 0.0533 10 7 6.1860 -2.9142 0.7975 11 14 5.3485 -5.4019 -0.0914 12 1 4.2511 -5.8584 -0.9817 13 1 6.6544 -5.8195 -0.6619 14 1 5.1795 -6.0076 1.2538 15 6 4.3556 -1.0881 1.1134 16 6 3.2344 -0.1658 1.6355 17 1 3.2517 -0.1557 2.7253 18 6 3.4581 1.2538 1.1104 19 8 1.9857 -0.6343 1.1927 20 1 -0.3633 0.5446 0.8715 21 1 -0.3633 0.4825 -0.9074 22 1 -0.3634 -1.0270 0.0358 23 1 1.6582 -1.6886 -1.2543 24 1 1.6026 -0.1254 -2.1023 25 1 3.8898 -0.9470 -2.2688 26 1 3.9006 0.3888 -1.0921 27 1 6.8652 -3.4197 1.2712 28 1 5.3038 -0.5509 1.1396 29 1 4.4238 -1.9679 1.7532 30 1 3.4457 1.2443 0.0205 31 1 2.6654 1.9060 1.4771 32 1 4.4226 1.6225 1.4596 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606251317.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:02 Heat of formation + Delta-G solvation = -28.503983 kcal Electronic energy + Delta-G solvation = -13978.537388 eV Core-core repulsion = 11746.807394 eV Total energy + Delta-G solvation = -2231.729994 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.91911 -36.83067 -34.92919 -33.44949 -31.45881 -29.49940 -27.52436 -25.66953 -24.13079 -21.71220 -20.48130 -18.87999 -18.05619 -17.01601 -16.27569 -15.87652 -15.18617 -14.81923 -14.62277 -14.13796 -13.83712 -13.51175 -13.15490 -12.93698 -12.81816 -12.65552 -12.59411 -12.32631 -12.20455 -11.93496 -11.72737 -11.20852 -10.71408 -10.53708 -10.07876 -8.63949 -7.85230 -5.30898 1.42172 1.44465 1.54754 2.50622 3.06108 3.27791 3.72860 4.00626 4.08825 4.23805 4.35450 4.39982 4.48701 4.70697 4.77534 4.81372 4.92192 4.97762 5.01108 5.15706 5.24492 5.27923 5.33711 5.46125 5.57815 5.64735 5.72343 6.40557 6.73112 7.18183 7.95728 8.33581 9.19131 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.045353 B = 0.012539 C = 0.011366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.226080 B = 2232.558454 C = 2462.950032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.066 3.934 3 H 0.086 0.914 4 C -0.161 4.161 5 C 0.141 3.859 6 N -0.602 5.602 7 C -0.262 4.262 8 H 0.058 0.942 9 C -0.050 4.050 10 N -0.935 5.935 11 Si 0.962 3.038 12 H -0.270 1.270 13 H -0.289 1.289 14 H -0.292 1.292 15 C 0.171 3.829 16 C 0.064 3.936 17 H 0.089 0.911 18 C -0.187 4.187 19 O -0.383 6.383 20 H 0.063 0.937 21 H 0.089 0.911 22 H 0.043 0.957 23 H 0.037 0.963 24 H 0.093 0.907 25 H 0.038 0.962 26 H 0.058 0.942 27 H 0.248 0.752 28 H 0.011 0.989 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.485 8.520 -1.193 12.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.010 3.990 3 H 0.104 0.896 4 C -0.201 4.201 5 C 0.014 3.986 6 N -0.324 5.324 7 C -0.393 4.393 8 H 0.075 0.925 9 C -0.245 4.245 10 N -0.581 5.581 11 Si 0.791 3.209 12 H -0.195 1.195 13 H -0.216 1.216 14 H -0.218 1.218 15 C 0.045 3.955 16 C 0.005 3.995 17 H 0.106 0.894 18 C -0.243 4.243 19 O -0.302 6.302 20 H 0.082 0.918 21 H 0.108 0.892 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.112 0.888 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.029 0.971 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.473 8.350 -1.017 11.939 hybrid contribution 0.674 -1.254 0.030 1.424 sum -7.799 7.096 -0.987 10.590 Atomic orbital electron populations 1.21886 0.93030 1.01915 1.03060 1.21329 0.95403 0.97433 0.84885 0.89638 1.22159 0.98588 1.00715 0.98676 1.21092 0.92341 0.93576 0.91557 1.43797 1.74778 1.07761 1.06054 1.19502 1.13190 0.89414 1.17207 0.92457 1.25724 0.95539 1.02252 1.01020 1.70204 1.17242 1.35001 1.35697 0.85282 0.77296 0.81216 0.77129 1.19496 1.21567 1.21849 1.21517 0.93172 0.95840 0.84930 1.22640 0.84561 0.93914 0.98402 0.89362 1.22736 1.02954 0.95620 1.02980 1.87442 1.34880 1.66136 1.41780 0.91801 0.89237 0.93814 0.94429 0.88836 0.94350 0.92417 0.94250 0.97060 0.95025 0.90475 0.90174 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.43 71.98 0.68 -3.01 16 2 C 0.07 2.16 2.42 28.93 0.07 2.23 16 3 H 0.09 2.42 4.49 -2.39 -0.01 2.41 16 4 C -0.16 -5.68 5.20 29.57 0.15 -5.53 16 5 C 0.14 5.90 5.61 87.42 0.49 6.39 16 6 N -0.60 -31.29 2.58 -696.63 -1.80 -33.08 16 7 C -0.26 -15.17 9.41 84.03 0.79 -14.38 16 8 H 0.06 3.29 7.88 -2.91 -0.02 3.27 16 9 C -0.05 -2.93 4.86 84.86 0.41 -2.52 16 10 N -0.93 -56.91 11.07 21.65 0.24 -56.67 16 11 Si 0.96 47.02 29.58 68.60 2.03 49.05 16 12 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 14 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 15 C 0.17 8.61 4.57 86.49 0.40 9.00 16 16 C 0.06 2.52 3.88 31.03 0.12 2.64 16 17 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 18 C -0.19 -5.66 7.53 71.98 0.54 -5.12 16 19 O -0.38 -15.60 9.82 -144.93 -1.42 -17.02 16 20 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.09 1.80 8.13 -2.38 -0.02 1.78 16 22 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.09 2.57 8.13 -2.38 -0.02 2.55 16 25 H 0.04 1.64 7.96 -2.38 -0.02 1.62 16 26 H 0.06 2.19 5.24 -2.39 -0.01 2.18 16 27 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 28 H 0.01 0.61 7.85 -2.38 -0.02 0.59 16 29 H 0.03 1.82 6.48 -2.39 -0.02 1.81 16 30 H 0.08 2.38 3.31 -2.39 -0.01 2.37 16 31 H 0.08 1.98 7.77 -2.39 -0.02 1.96 16 32 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 Total: -1.00 -66.70 243.55 3.79 -62.91 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: 1.09 Total: 5.11 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 3.65 Total: -10.30 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -1.56 Total: -89.76 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -1.42 Total: -17.02 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -66.70 3.79 -62.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606251317.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.408 kcal (2) G-P(sol) polarization free energy of solvation -66.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds