Wall clock time and date at job start Mon Mar 30 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47014 * 2 1 4 4 N 1.46496 * 109.46894 * 119.99810 * 2 1 3 5 5 C 1.36937 * 120.00065 * 120.59710 * 4 2 1 6 6 H 1.07996 * 120.00734 * 137.11344 * 5 4 2 7 7 C 1.38818 * 119.99323 * 316.83750 * 5 4 2 8 8 N 1.31627 * 119.99912 * 153.47494 * 7 5 4 9 9 Si 1.86791 * 120.00365 * 333.47686 * 7 5 4 10 10 H 1.48496 * 109.47344 * 85.29187 * 9 7 5 11 11 H 1.48501 * 109.47495 * 205.29601 * 9 7 5 12 12 H 1.48504 * 109.47146 * 325.29265 * 9 7 5 13 13 C 1.46501 * 120.00308 * 300.59181 * 4 2 1 14 14 H 1.09001 * 112.84835 * 5.40012 * 13 4 2 15 15 C 1.53779 * 113.61431 * 136.59787 * 13 4 2 16 16 C 1.54049 * 86.98806 * 89.16071 * 15 13 4 17 17 C 1.53784 * 87.07815 * 25.43325 * 16 15 13 18 18 H 1.08994 * 113.61777 * 89.11422 * 17 16 15 19 19 O 1.42897 * 113.61384 * 220.02434 * 17 16 15 20 20 H 1.09002 * 109.47276 * 301.42278 * 1 2 3 21 21 H 1.09001 * 109.47328 * 61.42413 * 1 2 3 22 22 H 1.08997 * 109.47292 * 181.42310 * 1 2 3 23 23 H 1.08993 * 109.47142 * 240.00289 * 2 1 3 24 24 H 1.09003 * 109.47087 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47123 * 300.00185 * 3 2 1 26 26 H 1.09002 * 109.46856 * 59.99948 * 3 2 1 27 27 H 0.97000 * 120.00107 * 179.97438 * 8 7 5 28 28 H 1.09001 * 113.61525 * 203.66543 * 15 13 4 29 29 H 1.09000 * 113.61098 * 334.56880 * 15 13 4 30 30 H 1.09003 * 113.61851 * 270.88550 * 16 15 13 31 31 H 1.08999 * 113.69867 * 139.98536 * 16 15 13 32 32 H 0.96698 * 114.00138 * 277.49023 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.8156 -1.7968 1.0706 6 1 3.6799 -1.9146 1.7073 7 6 2.5095 -2.7696 0.1288 8 7 3.4642 -3.5255 -0.3708 9 14 0.7427 -3.0059 -0.4296 10 1 0.4402 -2.0562 -1.5304 11 1 0.5580 -4.3981 -0.9122 12 1 -0.1749 -2.7512 0.7099 13 6 1.6537 -0.1977 2.5267 14 1 0.9430 0.6281 2.4921 15 6 1.2557 -1.3121 3.5088 16 6 2.7459 -1.3966 3.8900 17 6 2.8636 0.0686 3.4380 18 1 2.6624 0.7879 4.2317 19 8 4.0677 0.3519 2.7225 20 1 -0.3634 0.5358 0.8770 21 1 -0.3634 0.4916 -0.9025 22 1 -0.3634 -1.0273 0.0255 23 1 1.8933 -0.5138 -0.8899 24 1 3.1300 1.4426 0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.2503 -4.2055 -1.0286 28 1 0.6158 -0.9695 4.3220 29 1 0.8770 -2.2099 3.0202 30 1 3.3159 -2.0911 3.2727 31 1 2.9178 -1.5395 4.9568 32 1 4.8322 0.5202 3.2901 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642818142.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:10 Heat of formation + Delta-G solvation = 4.657193 kcal Electronic energy + Delta-G solvation = -14074.834229 eV Core-core repulsion = 11844.542212 eV Total energy + Delta-G solvation = -2230.292018 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.89144 -35.57483 -33.75199 -32.06106 -29.35546 -26.48134 -25.31755 -23.81617 -22.33407 -20.34493 -18.09746 -16.84699 -16.46424 -15.35501 -14.39890 -14.05938 -13.44871 -13.23376 -12.99292 -12.58173 -12.42879 -11.66036 -11.52859 -10.97572 -10.97441 -10.87313 -10.75110 -10.53973 -10.21743 -9.80264 -9.62252 -9.54808 -9.09187 -8.79693 -8.34231 -6.54191 -5.91381 -3.32590 3.41915 3.53981 3.57722 4.62098 4.87707 5.11486 5.34639 5.57439 5.62438 5.77225 5.82279 5.87259 6.11458 6.17052 6.20804 6.31767 6.39328 6.47940 6.52401 6.61909 6.73895 6.92933 7.04579 7.14153 7.19220 7.28540 8.19348 8.48795 8.67958 9.15876 9.83967 10.29700 11.22879 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.030193 B = 0.018708 C = 0.015853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.140304 B = 1496.335805 C = 1765.809553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.159 3.841 3 C -0.151 4.151 4 N -0.564 5.564 5 C -0.252 4.252 6 H 0.089 0.911 7 C 0.037 3.963 8 N -0.896 5.896 9 Si 0.868 3.132 10 H -0.282 1.282 11 H -0.309 1.309 12 H -0.272 1.272 13 C 0.173 3.827 14 H 0.060 0.940 15 C -0.159 4.159 16 C -0.164 4.164 17 C 0.050 3.950 18 H 0.056 0.944 19 O -0.529 6.529 20 H 0.048 0.952 21 H 0.046 0.954 22 H 0.053 0.947 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.037 0.963 26 H 0.041 0.959 27 H 0.261 0.739 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.039 0.961 32 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.822 7.272 5.559 9.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.053 3.947 3 C -0.210 4.210 4 N -0.283 5.283 5 C -0.381 4.381 6 H 0.106 0.894 7 C -0.163 4.163 8 N -0.537 5.537 9 Si 0.699 3.301 10 H -0.209 1.209 11 H -0.237 1.237 12 H -0.199 1.199 13 C 0.064 3.936 14 H 0.078 0.922 15 C -0.199 4.199 16 C -0.201 4.201 17 C -0.011 4.011 18 H 0.074 0.926 19 O -0.331 6.331 20 H 0.067 0.933 21 H 0.065 0.935 22 H 0.072 0.928 23 H 0.094 0.906 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.132 0.868 31 H 0.058 0.942 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.161 7.036 4.885 9.523 hybrid contribution -0.747 -0.212 0.266 0.821 sum -4.908 6.825 5.151 9.859 Atomic orbital electron populations 1.22645 0.99228 1.01508 1.00245 1.20647 0.90921 0.92113 0.91031 1.22207 1.01924 0.97645 0.99266 1.43741 1.57103 1.29774 0.97676 1.18867 1.03885 0.95185 1.20135 0.89389 1.25681 0.96468 0.96297 0.97890 1.69952 1.31376 1.23676 1.28661 0.87200 0.88801 0.75473 0.78654 1.20936 1.23712 1.19868 1.21403 0.91721 0.94177 0.86307 0.92153 1.23160 0.96085 1.01698 0.98943 1.23809 0.98045 0.99304 0.98949 1.24180 0.87806 0.93886 0.95274 0.92600 1.86852 1.18170 1.92824 1.35215 0.93313 0.93508 0.92813 0.90580 0.92225 0.94366 0.93952 0.92918 0.91910 0.90509 0.86796 0.94209 0.80558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.54 8.25 37.16 0.31 -3.24 16 2 C 0.16 3.53 2.22 -67.93 -0.15 3.38 16 3 C -0.15 -2.91 9.20 37.16 0.34 -2.57 16 4 N -0.56 -13.36 1.78 -157.23 -0.28 -13.64 16 5 C -0.25 -6.91 7.43 -15.06 -0.11 -7.03 16 6 H 0.09 2.61 5.30 -52.49 -0.28 2.34 16 7 C 0.04 1.06 4.98 -17.42 -0.09 0.98 16 8 N -0.90 -27.39 13.97 55.49 0.78 -26.62 16 9 Si 0.87 22.36 23.32 -169.99 -3.96 18.40 16 10 H -0.28 -7.05 6.38 56.52 0.36 -6.69 16 11 H -0.31 -8.17 7.11 56.52 0.40 -7.77 16 12 H -0.27 -6.90 6.61 56.52 0.37 -6.52 16 13 C 0.17 3.53 3.59 -67.11 -0.24 3.29 16 14 H 0.06 1.13 6.51 -51.93 -0.34 0.80 16 15 C -0.16 -3.07 7.48 -25.78 -0.19 -3.26 16 16 C -0.16 -3.13 7.32 -25.78 -0.19 -3.32 16 17 C 0.05 0.93 5.03 -25.91 -0.13 0.80 16 18 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 19 O -0.53 -10.50 12.26 -35.23 -0.43 -10.93 16 20 H 0.05 0.88 7.04 -51.93 -0.37 0.51 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.05 1.17 3.74 -51.93 -0.19 0.98 16 23 H 0.08 1.89 6.16 -51.93 -0.32 1.57 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.76 7.30 -51.93 -0.38 0.38 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.08 1.68 8.02 -51.93 -0.42 1.26 16 30 H 0.11 2.60 5.28 -51.93 -0.27 2.33 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.35 5.24 9.12 45.56 0.42 5.65 16 LS Contribution 242.57 15.07 3.66 3.66 Total: -1.00 -30.68 242.57 -4.59 -35.27 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -3.89 Total: 4.83 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -0.45 Total: -10.97 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.49 Total: -40.26 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.43 Total: -10.93 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -3.96 Total: 18.40 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -30.68 -4.59 -35.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642818142.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.927 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds