Wall clock time and date at job start Mon Mar 30 2020 01:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47177 * 2 1 4 4 N 1.46496 * 109.47062 * 120.00116 * 2 1 3 5 5 C 1.36937 * 120.00325 * 119.21095 * 4 2 1 6 6 H 1.08006 * 119.99904 * 135.75931 * 5 4 2 7 7 C 1.38806 * 120.00008 * 315.76554 * 5 4 2 8 8 N 1.31625 * 120.00062 * 344.04845 * 7 5 4 9 9 Si 1.86798 * 120.00169 * 164.04550 * 7 5 4 10 10 H 1.48500 * 109.47189 * 60.00053 * 9 7 5 11 11 H 1.48504 * 109.47134 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47319 * 300.00140 * 9 7 5 13 13 C 1.46509 * 119.99926 * 299.21340 * 4 2 1 14 14 H 1.08995 * 112.84788 * 5.26901 * 13 4 2 15 15 C 1.53780 * 113.61343 * 234.07266 * 13 4 2 16 16 C 1.53779 * 87.17576 * 270.76038 * 15 13 4 17 17 C 1.53783 * 113.68935 * 136.53810 * 13 4 2 18 18 H 1.08996 * 113.61557 * 334.58138 * 17 13 4 19 19 O 1.42895 * 113.60979 * 203.75590 * 17 13 4 20 20 H 1.09000 * 109.47085 * 299.99966 * 1 2 3 21 21 H 1.09004 * 109.46960 * 59.99702 * 1 2 3 22 22 H 1.08996 * 109.47081 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47085 * 240.00034 * 2 1 3 24 24 H 1.08999 * 109.47066 * 179.97438 * 3 2 1 25 25 H 1.08992 * 109.46790 * 300.00221 * 3 2 1 26 26 H 1.09000 * 109.47085 * 60.00034 * 3 2 1 27 27 H 0.96994 * 119.99850 * 180.02562 * 8 7 5 28 28 H 1.09010 * 113.61554 * 25.34594 * 15 13 4 29 29 H 1.09001 * 113.61599 * 156.16672 * 15 13 4 30 30 H 1.08998 * 113.61749 * 89.15793 * 16 15 13 31 31 H 1.09004 * 113.61641 * 220.06617 * 16 15 13 32 32 H 0.96709 * 113.99621 * 179.97438 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.7922 -1.8133 1.0706 6 1 3.6737 -1.9329 1.6832 7 6 2.4439 -2.7977 0.1560 8 7 1.2328 -2.8185 -0.3592 9 14 3.6939 -4.0927 -0.3438 10 1 4.1244 -4.8542 0.8562 11 1 3.0787 -5.0216 -1.3257 12 1 4.8724 -3.4316 -0.9596 13 6 1.6786 -0.1801 2.5267 14 1 0.9858 0.6606 2.4933 15 6 2.9036 0.0664 3.4231 16 6 2.7591 -1.3912 3.8915 17 6 1.2685 -1.2772 3.5233 18 1 0.8659 -2.1712 3.0471 19 8 0.4494 -0.8014 4.5931 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9564 0.8900 27 1 0.9894 -3.5066 -0.9980 28 1 3.8211 0.2570 2.8661 29 1 2.7275 0.7980 4.2117 30 1 3.3076 -2.1041 3.2759 31 1 2.9371 -1.5267 4.9583 32 1 0.1878 -1.4870 5.2231 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642818144.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:13 Heat of formation + Delta-G solvation = -28.544647 kcal Electronic energy + Delta-G solvation = -13855.359450 eV Core-core repulsion = 11623.627692 eV Total energy + Delta-G solvation = -2231.731757 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.45400 -37.34340 -35.09223 -33.90251 -30.76464 -27.69749 -27.07496 -25.53786 -24.39228 -21.72430 -20.02156 -18.28979 -17.83933 -16.94009 -16.21974 -15.86674 -15.04380 -14.89766 -14.60305 -14.09583 -13.74487 -13.19296 -13.03025 -12.84291 -12.76381 -12.62443 -12.36150 -12.09284 -11.99592 -11.75197 -11.40319 -11.18339 -10.73080 -10.43662 -10.37698 -8.36441 -7.79708 -5.46838 1.47424 1.50086 1.55270 2.50422 3.13708 3.30761 3.90084 4.01189 4.15793 4.36349 4.37674 4.50727 4.75874 4.85462 4.93955 4.94432 4.96223 5.12256 5.16104 5.19165 5.31443 5.37999 5.46034 5.69039 5.72178 5.81855 5.98030 6.58429 6.98996 7.26748 7.90039 8.49110 9.18726 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.027750 B = 0.016538 C = 0.012973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.758821 B = 1692.712638 C = 2157.797140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.184 3.816 3 C -0.150 4.150 4 N -0.568 5.568 5 C -0.271 4.271 6 H 0.063 0.937 7 C -0.022 4.022 8 N -0.909 5.909 9 Si 0.951 3.049 10 H -0.275 1.275 11 H -0.296 1.296 12 H -0.279 1.279 13 C 0.164 3.836 14 H 0.059 0.941 15 C -0.142 4.142 16 C -0.154 4.154 17 C 0.064 3.936 18 H 0.036 0.964 19 O -0.564 6.564 20 H 0.033 0.967 21 H 0.048 0.952 22 H 0.046 0.954 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.249 0.751 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.988 3.939 4.758 6.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.079 3.921 3 C -0.208 4.208 4 N -0.289 5.289 5 C -0.402 4.402 6 H 0.081 0.919 7 C -0.221 4.221 8 N -0.551 5.551 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.222 1.222 12 H -0.205 1.205 13 C 0.055 3.945 14 H 0.077 0.923 15 C -0.182 4.182 16 C -0.192 4.192 17 C 0.002 3.998 18 H 0.054 0.946 19 O -0.371 6.371 20 H 0.052 0.948 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.972 4.392 4.293 6.218 hybrid contribution 0.291 -1.597 -0.191 1.635 sum 1.264 2.795 4.102 5.122 Atomic orbital electron populations 1.22044 0.97936 1.01010 0.98959 1.20179 0.92204 0.90573 0.89186 1.22212 1.00418 0.97204 1.01009 1.43715 1.58112 1.28408 0.98633 1.19183 1.03397 0.95936 1.21656 0.91932 1.26046 0.96473 0.98497 1.01120 1.70131 1.18131 1.35090 1.31723 0.85631 0.79339 0.79278 0.77824 1.20080 1.22246 1.20542 1.21315 0.94313 0.93770 0.85083 0.92317 1.23271 0.99320 0.96483 0.99126 1.23507 0.97259 0.98191 1.00223 1.23387 0.89796 0.97992 0.88580 0.94585 1.86335 1.70758 1.40278 1.39690 0.94766 0.93269 0.93492 0.93766 0.93809 0.91927 0.93261 0.94164 0.92725 0.89838 0.89719 0.91273 0.76353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.17 9.10 71.98 0.66 -5.52 16 2 C 0.18 8.45 2.37 44.99 0.11 8.55 16 3 C -0.15 -5.59 9.18 71.98 0.66 -4.93 16 4 N -0.57 -27.41 2.51 -651.33 -1.63 -29.04 16 5 C -0.27 -14.08 7.37 84.03 0.62 -13.46 16 6 H 0.06 3.23 5.74 -2.91 -0.02 3.21 16 7 C -0.02 -1.19 4.85 84.86 0.41 -0.78 16 8 N -0.91 -50.99 10.97 21.65 0.24 -50.75 16 9 Si 0.95 43.21 29.58 68.60 2.03 45.23 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 C 0.16 7.09 3.46 45.52 0.16 7.25 16 14 H 0.06 2.54 6.49 -2.39 -0.02 2.52 16 15 C -0.14 -5.40 7.48 31.12 0.23 -5.17 16 16 C -0.15 -5.88 7.32 31.18 0.23 -5.65 16 17 C 0.06 2.64 4.66 31.18 0.15 2.79 16 18 H 0.04 1.75 8.02 -2.39 -0.02 1.73 16 19 O -0.56 -20.03 13.59 -148.98 -2.02 -22.05 16 20 H 0.03 1.42 7.07 -2.39 -0.02 1.40 16 21 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 22 H 0.05 2.37 6.88 -2.39 -0.02 2.36 16 23 H 0.04 2.29 6.89 -2.39 -0.02 2.28 16 24 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.05 1.75 7.21 -2.39 -0.02 1.73 16 27 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 28 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 29 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.08 3.59 5.33 -2.39 -0.01 3.58 16 31 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.39 9.93 9.12 -74.05 -0.68 9.25 16 Total: -1.00 -58.25 253.70 2.25 -56.00 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.43 Total: 17.53 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 3.22 Total: -16.93 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -1.40 Total: -79.79 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -2.02 Total: -22.05 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -58.25 2.25 -56.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642818144.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.454 kcal (2) G-P(sol) polarization free energy of solvation -58.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds