Wall clock time and date at job start Mon Mar 30 2020 02:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47235 * 2 1 4 4 C 1.52997 * 109.47270 * 120.00176 * 2 1 3 5 5 C 1.50702 * 109.47051 * 184.99729 * 4 2 1 6 6 H 1.07998 * 120.00000 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99831 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00206 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00032 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47055 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47330 * 119.99724 * 9 7 5 12 12 H 1.48496 * 109.46972 * 239.99888 * 9 7 5 13 13 N 1.46904 * 109.46664 * 240.00111 * 2 1 3 14 14 C 1.47958 * 111.00171 * 62.47901 * 13 2 1 15 15 C 1.53933 * 86.18108 * 222.41414 * 14 13 2 16 16 C 1.52999 * 113.73414 * 269.25408 * 15 14 13 17 17 O 1.42903 * 113.73389 * 138.07726 * 15 14 13 18 18 C 1.47957 * 111.00282 * 323.11559 * 13 2 1 19 19 H 1.09001 * 109.47129 * 190.21728 * 1 2 3 20 20 H 1.09005 * 109.47184 * 310.21280 * 1 2 3 21 21 H 1.09003 * 109.47402 * 70.21224 * 1 2 3 22 22 H 1.08998 * 109.47113 * 304.99930 * 4 2 1 23 23 H 1.09004 * 109.47133 * 64.99763 * 4 2 1 24 24 H 0.96998 * 120.00404 * 180.02562 * 8 7 5 25 25 H 1.09004 * 113.76208 * 108.09439 * 14 13 2 26 26 H 1.08995 * 113.85876 * 336.74457 * 14 13 2 27 27 H 1.08997 * 109.47459 * 298.10006 * 16 15 14 28 28 H 1.09003 * 109.46939 * 58.09979 * 16 15 14 29 29 H 1.08999 * 109.47276 * 178.09839 * 16 15 14 30 30 H 0.96696 * 114.00106 * 180.02562 * 17 15 14 31 31 H 1.09002 * 113.75962 * 23.26911 * 18 13 2 32 32 H 1.08998 * 113.75930 * 251.90175 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0790 -0.0862 0.5390 7 6 4.2305 -1.1936 2.3576 8 7 3.5766 -1.8379 3.2993 9 14 6.0921 -1.0613 2.4366 10 1 6.5837 -0.2909 1.2661 11 1 6.4863 -0.3661 3.6882 12 1 6.6863 -2.4220 2.4180 13 7 2.0195 -0.6925 -1.1995 14 6 1.5945 0.0120 -2.4292 15 6 1.2876 -1.3843 -2.9998 16 6 2.4652 -2.0184 -3.7427 17 8 0.0647 -1.4486 -3.7364 18 6 1.1546 -1.8446 -1.5369 19 1 -0.3633 -1.0114 0.1823 20 1 -0.3634 0.6635 0.7848 21 1 -0.3634 0.3479 -0.9670 22 1 1.6054 -0.2618 2.1369 23 1 1.7516 -1.7716 1.2055 24 1 4.0609 -2.2447 4.0347 25 1 2.4060 0.5277 -2.9427 26 1 0.7108 0.6362 -2.2966 27 1 2.7301 -1.3992 -4.5997 28 1 3.3203 -2.0940 -3.0710 29 1 2.1843 -3.0138 -4.0867 30 1 -0.1321 -2.3242 -4.0963 31 1 0.1420 -1.7641 -1.1415 32 1 1.6147 -2.8124 -1.3375 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642822232.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:19 Heat of formation + Delta-G solvation = -16.092427 kcal Electronic energy + Delta-G solvation = -13340.520119 eV Core-core repulsion = 11109.328330 eV Total energy + Delta-G solvation = -2231.191789 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.22569 -36.01270 -33.41911 -31.80842 -28.87041 -27.30959 -25.87678 -24.87671 -22.69344 -19.84049 -18.31984 -17.01456 -16.20668 -15.23145 -14.99944 -14.37989 -14.20644 -13.24256 -12.99649 -12.93417 -12.38347 -12.01271 -11.78839 -11.48631 -11.29905 -11.02749 -10.89761 -10.63709 -10.49160 -10.25558 -9.86557 -9.53672 -9.18644 -8.99576 -8.26871 -7.97658 -5.88249 -3.86295 3.38246 3.45449 3.51232 4.23514 4.51684 4.57228 4.74278 5.09338 5.39663 5.49795 5.64604 5.74929 5.81832 5.85923 5.95175 5.97336 6.08084 6.20443 6.33114 6.35344 6.43124 6.62017 6.92819 7.16329 7.53199 7.76629 7.79447 7.95264 8.11834 8.58302 9.19579 9.75342 11.23849 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.044009 B = 0.009698 C = 0.008679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.075310 B = 2886.410703 C = 3225.549474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.071 0.929 4 C 0.035 3.965 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.440 5.440 14 C 0.006 3.994 15 C 0.092 3.908 16 C -0.153 4.153 17 O -0.560 6.560 18 C -0.027 4.027 19 H 0.058 0.942 20 H 0.056 0.944 21 H 0.048 0.952 22 H 0.018 0.982 23 H 0.016 0.984 24 H 0.257 0.743 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.372 0.628 31 H 0.085 0.915 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.156 0.128 -11.634 12.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.056 4.056 3 H 0.089 0.911 4 C -0.002 4.002 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.150 4.150 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.163 5.163 14 C -0.123 4.123 15 C 0.051 3.949 16 C -0.211 4.211 17 O -0.365 6.365 18 C -0.156 4.156 19 H 0.076 0.924 20 H 0.075 0.925 21 H 0.067 0.933 22 H 0.037 0.963 23 H 0.035 0.965 24 H 0.066 0.934 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.219 0.781 31 H 0.102 0.898 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.439 0.585 -11.160 12.025 hybrid contribution 0.187 -0.431 0.039 0.471 sum -4.253 0.154 -11.121 11.908 Atomic orbital electron populations 1.22567 0.99134 1.01703 1.00839 1.22322 0.90720 0.98950 0.93619 0.91091 1.19077 0.96339 0.95178 0.89601 1.21215 0.91827 1.32918 1.06998 0.92180 1.25016 0.98113 0.95851 0.95986 1.69974 1.35139 1.36987 1.12360 0.86560 0.86332 0.77564 0.77675 1.19773 1.21358 1.21306 1.68831 1.43319 1.03967 1.00196 1.24175 0.99877 0.94854 0.93350 1.23239 0.84317 0.97514 0.89866 1.22055 0.98597 0.99733 1.00672 1.86546 1.40778 1.35998 1.73212 1.24804 0.98579 0.98048 0.94195 0.92354 0.92497 0.93328 0.96336 0.96550 0.93372 0.89581 0.90883 0.92160 0.89743 0.92556 0.78127 0.89768 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 7.80 37.16 0.29 -2.98 16 2 C 0.05 1.11 2.35 -67.71 -0.16 0.95 16 3 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 4 C 0.04 0.92 4.54 -27.88 -0.13 0.79 16 5 C -0.49 -14.08 8.84 -34.44 -0.30 -14.39 16 6 H 0.06 1.72 7.74 -52.49 -0.41 1.32 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 9 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 13 N -0.44 -8.66 5.76 -230.20 -1.33 -9.98 16 14 C 0.01 0.10 7.15 -2.77 -0.02 0.08 16 15 C 0.09 1.35 1.98 -89.69 -0.18 1.18 16 16 C -0.15 -1.98 9.37 37.16 0.35 -1.64 16 17 O -0.56 -7.59 13.51 -35.23 -0.48 -8.07 16 18 C -0.03 -0.47 6.76 -2.77 -0.02 -0.49 16 19 H 0.06 1.04 6.40 -51.93 -0.33 0.70 16 20 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 21 H 0.05 0.79 5.95 -51.93 -0.31 0.48 16 22 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.02 0.45 7.92 -51.93 -0.41 0.04 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.09 1.34 8.10 -51.93 -0.42 0.92 16 26 H 0.07 1.19 6.02 -51.93 -0.31 0.87 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.08 1.25 8.00 -51.93 -0.42 0.83 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.37 3.44 9.04 45.56 0.41 3.85 16 31 H 0.08 1.44 4.98 -51.93 -0.26 1.18 16 32 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 LS Contribution 258.93 15.07 3.90 3.90 Total: -1.00 -31.55 258.93 -6.57 -38.12 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -4.12 Total: 0.79 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -0.26 Total: -15.14 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.59 Total: -36.89 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.48 Total: -8.07 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.55 -6.57 -38.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642822232.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.025 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds