Wall clock time and date at job start Mon Mar 30 2020 02:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47235 * 2 1 4 4 C 1.52997 * 109.47270 * 120.00176 * 2 1 3 5 5 C 1.50702 * 109.47051 * 184.99729 * 4 2 1 6 6 H 1.07998 * 120.00000 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99831 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00206 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00032 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47055 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47330 * 119.99724 * 9 7 5 12 12 H 1.48496 * 109.46972 * 239.99888 * 9 7 5 13 13 N 1.46904 * 109.46664 * 240.00111 * 2 1 3 14 14 C 1.47958 * 111.00171 * 62.47901 * 13 2 1 15 15 C 1.53933 * 86.18108 * 222.41414 * 14 13 2 16 16 C 1.52999 * 113.73414 * 269.25408 * 15 14 13 17 17 O 1.42903 * 113.73389 * 138.07726 * 15 14 13 18 18 C 1.47957 * 111.00282 * 323.11559 * 13 2 1 19 19 H 1.09001 * 109.47129 * 190.21728 * 1 2 3 20 20 H 1.09005 * 109.47184 * 310.21280 * 1 2 3 21 21 H 1.09003 * 109.47402 * 70.21224 * 1 2 3 22 22 H 1.08998 * 109.47113 * 304.99930 * 4 2 1 23 23 H 1.09004 * 109.47133 * 64.99763 * 4 2 1 24 24 H 0.96998 * 120.00404 * 180.02562 * 8 7 5 25 25 H 1.09004 * 113.76208 * 108.09439 * 14 13 2 26 26 H 1.08995 * 113.85876 * 336.74457 * 14 13 2 27 27 H 1.08997 * 109.47459 * 298.10006 * 16 15 14 28 28 H 1.09003 * 109.46939 * 58.09979 * 16 15 14 29 29 H 1.08999 * 109.47276 * 178.09839 * 16 15 14 30 30 H 0.96696 * 114.00106 * 180.02562 * 17 15 14 31 31 H 1.09002 * 113.75962 * 23.26911 * 18 13 2 32 32 H 1.08998 * 113.75930 * 251.90175 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0790 -0.0862 0.5390 7 6 4.2305 -1.1936 2.3576 8 7 3.5766 -1.8379 3.2993 9 14 6.0921 -1.0613 2.4366 10 1 6.5837 -0.2909 1.2661 11 1 6.4863 -0.3661 3.6882 12 1 6.6863 -2.4220 2.4180 13 7 2.0195 -0.6925 -1.1995 14 6 1.5945 0.0120 -2.4292 15 6 1.2876 -1.3843 -2.9998 16 6 2.4652 -2.0184 -3.7427 17 8 0.0647 -1.4486 -3.7364 18 6 1.1546 -1.8446 -1.5369 19 1 -0.3633 -1.0114 0.1823 20 1 -0.3634 0.6635 0.7848 21 1 -0.3634 0.3479 -0.9670 22 1 1.6054 -0.2618 2.1369 23 1 1.7516 -1.7716 1.2055 24 1 4.0609 -2.2447 4.0347 25 1 2.4060 0.5277 -2.9427 26 1 0.7108 0.6362 -2.2966 27 1 2.7301 -1.3992 -4.5997 28 1 3.3203 -2.0940 -3.0710 29 1 2.1843 -3.0138 -4.0867 30 1 -0.1321 -2.3242 -4.0963 31 1 0.1420 -1.7641 -1.1415 32 1 1.6147 -2.8124 -1.3375 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642822232.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:18 Heat of formation + Delta-G solvation = -41.017502 kcal Electronic energy + Delta-G solvation = -13341.600951 eV Core-core repulsion = 11109.328330 eV Total energy + Delta-G solvation = -2232.272621 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.58581 -37.31249 -35.27924 -33.60370 -30.23112 -29.12060 -27.22247 -26.37692 -24.66312 -21.29913 -19.74218 -18.42676 -18.29273 -16.69396 -16.44584 -16.07170 -15.69995 -14.65316 -14.51453 -14.33387 -13.98691 -13.66916 -13.30411 -13.10205 -12.67972 -12.66149 -12.45655 -12.35980 -12.25254 -11.92342 -11.37256 -11.17291 -11.11078 -10.69214 -10.51876 -9.46622 -8.12883 -6.18724 1.40269 1.40729 1.54537 2.45599 3.01175 3.21047 3.26404 3.53069 3.93745 4.08434 4.19355 4.33631 4.43933 4.53850 4.62177 4.74679 4.88345 4.92265 4.97292 5.04871 5.14406 5.23663 5.32542 5.40372 5.59410 5.75041 5.88763 6.23478 6.43316 6.89709 6.94945 7.47445 8.99538 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.044009 B = 0.009698 C = 0.008679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.075310 B = 2886.410703 C = 3225.549474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.060 3.940 3 H 0.064 0.936 4 C 0.043 3.957 5 C -0.504 4.504 6 H 0.057 0.943 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.960 3.040 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.281 1.281 13 N -0.470 5.470 14 C 0.005 3.995 15 C 0.112 3.888 16 C -0.149 4.149 17 O -0.564 6.564 18 C -0.034 4.034 19 H 0.055 0.945 20 H 0.061 0.939 21 H 0.070 0.930 22 H -0.007 1.007 23 H -0.011 1.011 24 H 0.260 0.740 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.393 0.607 31 H 0.085 0.915 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.907 0.345 -13.367 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.049 4.049 3 H 0.082 0.918 4 C 0.005 3.995 5 C -0.542 4.542 6 H 0.075 0.925 7 C -0.203 4.203 8 N -0.582 5.582 9 Si 0.786 3.214 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.207 1.207 13 N -0.193 5.193 14 C -0.123 4.123 15 C 0.071 3.929 16 C -0.206 4.206 17 O -0.372 6.372 18 C -0.163 4.163 19 H 0.074 0.926 20 H 0.080 0.920 21 H 0.088 0.912 22 H 0.011 0.989 23 H 0.008 0.992 24 H 0.068 0.932 25 H 0.113 0.887 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.243 0.757 31 H 0.103 0.897 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.202 0.795 -12.915 13.604 hybrid contribution 0.059 -0.522 0.561 0.768 sum -4.143 0.273 -12.354 13.033 Atomic orbital electron populations 1.22426 0.96560 1.01841 1.02260 1.22037 0.92760 0.97757 0.92351 0.91757 1.18910 0.95354 0.93866 0.91341 1.21520 0.93210 1.32648 1.06855 0.92487 1.25907 1.03260 0.95482 0.95622 1.70102 1.37172 1.37891 1.13040 0.85461 0.80166 0.77761 0.78011 1.18894 1.20618 1.20746 1.68710 1.44612 1.05329 1.00656 1.24227 1.00362 0.95874 0.91878 1.22916 0.85470 0.95807 0.88701 1.22017 0.96889 1.01349 1.00371 1.86499 1.39935 1.37916 1.72828 1.24866 0.98025 0.96786 0.96583 0.92633 0.91952 0.91168 0.98920 0.99248 0.93174 0.88686 0.90425 0.90648 0.91975 0.90153 0.75673 0.89668 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.00 7.80 71.98 0.56 -5.44 16 2 C 0.06 2.54 2.35 44.91 0.11 2.64 16 3 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 4 C 0.04 2.29 4.54 29.85 0.14 2.43 16 5 C -0.50 -29.41 8.84 25.60 0.23 -29.18 16 6 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 7 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 8 N -0.94 -58.58 13.29 21.45 0.28 -58.29 16 9 Si 0.96 46.03 29.54 68.60 2.03 48.05 16 10 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 13 N -0.47 -18.28 5.76 -885.43 -5.10 -23.38 16 14 C 0.01 0.16 7.15 86.41 0.62 0.77 16 15 C 0.11 3.06 1.98 -10.15 -0.02 3.04 16 16 C -0.15 -3.48 9.37 71.98 0.67 -2.80 16 17 O -0.56 -13.39 13.51 -148.98 -2.01 -15.41 16 18 C -0.03 -1.14 6.76 86.41 0.58 -0.56 16 19 H 0.05 1.95 6.40 -2.39 -0.02 1.94 16 20 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 21 H 0.07 2.14 5.95 -2.39 -0.01 2.12 16 22 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 23 H -0.01 -0.64 7.92 -2.38 -0.02 -0.65 16 24 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 25 H 0.09 2.76 8.10 -2.38 -0.02 2.74 16 26 H 0.08 2.33 6.02 -2.39 -0.01 2.32 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.06 1.75 8.00 -2.39 -0.02 1.73 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.39 5.80 9.04 -74.06 -0.67 5.13 16 31 H 0.09 2.84 4.98 -2.39 -0.01 2.83 16 32 H 0.07 2.56 8.10 -2.39 -0.02 2.54 16 Total: -1.00 -67.62 258.93 -1.02 -68.64 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.43 Total: 9.41 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 3.35 Total: -29.02 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -4.81 Total: -81.67 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -2.01 Total: -15.41 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -67.62 -1.02 -68.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642822232.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.625 kcal (2) G-P(sol) polarization free energy of solvation -67.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds