Wall clock time and date at job start Mon Mar 30 2020 02:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.55194 * 2 1 4 4 C 1.54993 * 110.61389 * 237.12266 * 2 1 3 5 5 C 1.54991 * 102.01057 * 204.59447 * 4 2 1 6 6 H 1.09002 * 110.34315 * 262.02737 * 5 4 2 7 7 C 1.52995 * 110.68651 * 139.48162 * 5 4 2 8 8 N 1.46501 * 109.47540 * 70.03629 * 7 5 4 9 9 C 1.36934 * 120.00391 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99985 * 359.97438 * 9 8 7 11 11 C 1.38810 * 120.00330 * 180.02562 * 9 8 7 12 12 N 1.31625 * 119.99827 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00243 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47454 * 89.99717 * 13 11 9 15 15 H 1.48505 * 109.47179 * 209.99662 * 13 11 9 16 16 H 1.48500 * 109.47274 * 329.99464 * 13 11 9 17 17 C 1.54095 * 104.25134 * 20.66854 * 5 4 2 18 18 H 1.09006 * 110.00634 * 242.66889 * 17 5 4 19 19 C 1.53003 * 109.87923 * 121.59023 * 17 5 4 20 20 O 1.43748 * 107.29395 * 2.16547 * 17 5 4 21 21 H 1.09001 * 109.47002 * 300.69572 * 1 2 3 22 22 H 1.08993 * 109.46955 * 60.70009 * 1 2 3 23 23 H 1.09000 * 109.47050 * 180.69838 * 1 2 3 24 24 H 1.08998 * 110.91325 * 322.67444 * 4 2 1 25 25 H 1.09006 * 110.90692 * 86.27694 * 4 2 1 26 26 H 1.08990 * 109.47616 * 190.03984 * 7 5 4 27 27 H 1.09004 * 109.46810 * 310.03870 * 7 5 4 28 28 H 0.97002 * 119.99364 * 359.97438 * 8 7 5 29 29 H 0.96998 * 120.00022 * 180.02562 * 12 11 9 30 30 H 1.09007 * 109.47073 * 300.71645 * 19 17 5 31 31 H 1.09000 * 109.47160 * 60.71225 * 19 17 5 32 32 H 1.08998 * 109.47206 * 180.71574 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0757 -0.7875 -1.2183 5 6 3.4795 -1.2178 -0.7218 6 1 4.2407 -0.5348 -1.0990 7 6 3.7887 -2.6529 -1.1527 8 7 3.9924 -2.6943 -2.6029 9 6 4.2830 -3.8817 -3.2199 10 1 4.3625 -4.7876 -2.6374 11 6 4.4766 -3.9208 -4.5939 12 7 4.3802 -2.8166 -5.3038 13 14 4.8737 -5.5404 -5.4355 14 1 3.6120 -6.2084 -5.8442 15 1 5.7088 -5.2827 -6.6361 16 1 5.6162 -6.4179 -4.4952 17 6 3.3840 -1.1243 0.8133 18 1 4.0856 -0.3779 1.1859 19 6 3.6936 -2.4863 1.4378 20 8 2.0384 -0.7337 1.1348 21 1 -0.3633 0.5246 0.8837 22 1 -0.3633 0.5029 -0.8961 23 1 -0.3633 -1.0276 0.0125 24 1 1.4549 -1.6584 -1.4284 25 1 2.1508 -0.1444 -2.0953 26 1 4.6920 -2.9969 -0.6490 27 1 2.9541 -3.3006 -0.8844 28 1 3.9207 -1.8806 -3.1261 29 1 4.5151 -2.8440 -6.2639 30 1 2.9836 -3.2258 1.0672 31 1 4.7058 -2.7878 1.1687 32 1 3.6117 -2.4158 2.5225 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686513837.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:34 Heat of formation + Delta-G solvation = -46.835514 kcal Electronic energy + Delta-G solvation = -13143.662448 eV Core-core repulsion = 10911.137539 eV Total energy + Delta-G solvation = -2232.524909 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.59333 -35.05585 -32.81720 -32.21630 -30.14580 -28.45512 -25.45996 -23.54870 -22.38573 -21.00882 -19.23715 -17.10074 -16.39780 -15.48596 -14.78330 -14.41787 -14.03438 -13.59826 -13.10347 -12.72318 -12.40219 -12.17817 -11.89299 -11.69789 -11.59499 -11.03764 -10.87182 -10.76127 -10.42594 -10.36798 -10.17763 -9.90521 -9.67947 -9.33986 -8.83844 -6.89352 -5.75343 -3.03534 3.44327 3.49336 3.51074 4.02298 4.59288 4.87047 5.01554 5.17588 5.21375 5.37184 5.50957 5.58778 5.64498 5.77118 5.81582 5.88327 6.07311 6.12223 6.15782 6.22630 6.27553 6.42677 6.51204 6.53120 6.78780 6.86256 7.25550 7.71200 8.43868 9.54843 10.13488 10.48385 11.47726 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051211 B = 0.008151 C = 0.007476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.625856 B = 3434.357604 C = 3744.342752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.069 3.931 3 H 0.064 0.936 4 C -0.136 4.136 5 C -0.127 4.127 6 H 0.080 0.920 7 C 0.162 3.838 8 N -0.733 5.733 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.015 4.015 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.081 3.919 18 H 0.062 0.938 19 C -0.152 4.152 20 O -0.377 6.377 21 H 0.057 0.943 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.024 0.976 27 H 0.023 0.977 28 H 0.383 0.617 29 H 0.255 0.745 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.267 5.149 10.733 12.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.011 3.989 3 H 0.082 0.918 4 C -0.174 4.174 5 C -0.146 4.146 6 H 0.099 0.901 7 C 0.035 3.965 8 N -0.377 5.377 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.211 4.211 12 N -0.583 5.583 13 Si 0.738 3.262 14 H -0.218 1.218 15 H -0.218 1.218 16 H -0.208 1.208 17 C 0.023 3.977 18 H 0.080 0.920 19 C -0.210 4.210 20 O -0.297 6.297 21 H 0.076 0.924 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.216 0.784 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.333 4.919 10.903 12.722 hybrid contribution 0.371 -0.511 -0.966 1.154 sum -3.961 4.409 9.937 11.571 Atomic orbital electron populations 1.21750 0.93595 1.02857 1.01882 1.23113 0.94822 0.95079 0.85843 0.91834 1.23199 0.96058 1.00697 0.97463 1.22764 0.97792 0.99948 0.94063 0.90134 1.20844 0.97458 0.91697 0.86488 1.42399 1.85352 1.08719 1.01258 1.19240 1.39634 0.87540 0.90515 0.91206 1.24739 1.02913 0.97088 0.96366 1.69663 1.56851 1.25808 1.06006 0.86183 0.77792 0.83090 0.79107 1.21751 1.21777 1.20768 1.22657 0.84188 0.96481 0.94353 0.91994 1.22013 1.02571 0.96251 1.00116 1.88831 1.28200 1.73631 1.39014 0.92386 0.91258 0.91799 0.90047 0.90391 0.95795 0.95938 0.78383 0.93563 0.91363 0.90764 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.66 37.16 0.36 -1.37 16 2 C 0.07 0.97 3.97 -25.68 -0.10 0.87 16 3 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 4 C -0.14 -2.22 6.02 -24.63 -0.15 -2.37 16 5 C -0.13 -2.17 3.06 -89.00 -0.27 -2.44 16 6 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 7 C 0.16 3.35 4.40 -4.04 -0.02 3.33 16 8 N -0.73 -18.88 5.50 -59.91 -0.33 -19.21 16 9 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 12 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 13 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 C 0.08 1.23 4.06 -26.16 -0.11 1.13 16 18 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 19 C -0.15 -2.17 8.38 37.16 0.31 -1.85 16 20 O -0.38 -6.00 10.89 -35.23 -0.38 -6.38 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.08 1.45 7.70 -51.93 -0.40 1.05 16 25 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.02 0.49 6.43 -51.93 -0.33 0.16 16 27 H 0.02 0.48 6.99 -51.93 -0.36 0.12 16 28 H 0.38 10.30 7.63 -40.82 -0.31 9.99 16 29 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.07 1.04 6.82 -51.93 -0.35 0.68 16 31 H 0.07 1.02 6.76 -51.93 -0.35 0.67 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 258.95 15.07 3.90 3.90 Total: -1.00 -30.65 258.95 -6.37 -37.03 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.04 Total: 5.00 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -0.22 Total: -10.17 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.40 Total: -46.98 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.38 Total: -6.38 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.65 -6.37 -37.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686513837.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.810 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds