Wall clock time and date at job start Mon Mar 30 2020 02:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.55194 * 2 1 4 4 C 1.54993 * 110.61389 * 237.12266 * 2 1 3 5 5 C 1.54991 * 102.01057 * 204.59447 * 4 2 1 6 6 H 1.09002 * 110.34315 * 262.02737 * 5 4 2 7 7 C 1.52995 * 110.68651 * 139.48162 * 5 4 2 8 8 N 1.46501 * 109.47540 * 70.03629 * 7 5 4 9 9 C 1.36934 * 120.00391 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99985 * 359.97438 * 9 8 7 11 11 C 1.38810 * 120.00330 * 180.02562 * 9 8 7 12 12 N 1.31625 * 119.99827 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00243 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47454 * 89.99717 * 13 11 9 15 15 H 1.48505 * 109.47179 * 209.99662 * 13 11 9 16 16 H 1.48500 * 109.47274 * 329.99464 * 13 11 9 17 17 C 1.54095 * 104.25134 * 20.66854 * 5 4 2 18 18 H 1.09006 * 110.00634 * 242.66889 * 17 5 4 19 19 C 1.53003 * 109.87923 * 121.59023 * 17 5 4 20 20 O 1.43748 * 107.29395 * 2.16547 * 17 5 4 21 21 H 1.09001 * 109.47002 * 300.69572 * 1 2 3 22 22 H 1.08993 * 109.46955 * 60.70009 * 1 2 3 23 23 H 1.09000 * 109.47050 * 180.69838 * 1 2 3 24 24 H 1.08998 * 110.91325 * 322.67444 * 4 2 1 25 25 H 1.09006 * 110.90692 * 86.27694 * 4 2 1 26 26 H 1.08990 * 109.47616 * 190.03984 * 7 5 4 27 27 H 1.09004 * 109.46810 * 310.03870 * 7 5 4 28 28 H 0.97002 * 119.99364 * 359.97438 * 8 7 5 29 29 H 0.96998 * 120.00022 * 180.02562 * 12 11 9 30 30 H 1.09007 * 109.47073 * 300.71645 * 19 17 5 31 31 H 1.09000 * 109.47160 * 60.71225 * 19 17 5 32 32 H 1.08998 * 109.47206 * 180.71574 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0757 -0.7875 -1.2183 5 6 3.4795 -1.2178 -0.7218 6 1 4.2407 -0.5348 -1.0990 7 6 3.7887 -2.6529 -1.1527 8 7 3.9924 -2.6943 -2.6029 9 6 4.2830 -3.8817 -3.2199 10 1 4.3625 -4.7876 -2.6374 11 6 4.4766 -3.9208 -4.5939 12 7 4.3802 -2.8166 -5.3038 13 14 4.8737 -5.5404 -5.4355 14 1 3.6120 -6.2084 -5.8442 15 1 5.7088 -5.2827 -6.6361 16 1 5.6162 -6.4179 -4.4952 17 6 3.3840 -1.1243 0.8133 18 1 4.0856 -0.3779 1.1859 19 6 3.6936 -2.4863 1.4378 20 8 2.0384 -0.7337 1.1348 21 1 -0.3633 0.5246 0.8837 22 1 -0.3633 0.5029 -0.8961 23 1 -0.3633 -1.0276 0.0125 24 1 1.4549 -1.6584 -1.4284 25 1 2.1508 -0.1444 -2.0953 26 1 4.6920 -2.9969 -0.6490 27 1 2.9541 -3.3006 -0.8844 28 1 3.9207 -1.8806 -3.1261 29 1 4.5151 -2.8440 -6.2639 30 1 2.9836 -3.2258 1.0672 31 1 4.7058 -2.7878 1.1687 32 1 3.6117 -2.4158 2.5225 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686513837.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:34 Heat of formation + Delta-G solvation = -67.164467 kcal Electronic energy + Delta-G solvation = -13144.543978 eV Core-core repulsion = 10911.137539 eV Total energy + Delta-G solvation = -2233.406439 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.85542 -36.82756 -34.44922 -33.52314 -31.99785 -29.63340 -27.25015 -24.99020 -24.13753 -22.17669 -20.69418 -19.10363 -17.76587 -16.68611 -16.60783 -15.84411 -15.54146 -15.27322 -14.91362 -14.05492 -13.69781 -13.50149 -13.23276 -12.97712 -12.86597 -12.78680 -12.72039 -12.27561 -12.06801 -11.86564 -11.68508 -11.56482 -11.36124 -10.93613 -10.53016 -9.00082 -7.96429 -5.25214 1.46561 1.48353 1.56897 2.54875 2.86439 3.36440 3.55794 3.74981 3.84526 4.04065 4.22063 4.33665 4.41661 4.49167 4.56676 4.66889 4.71315 4.84692 4.91778 5.00107 5.03515 5.16670 5.20270 5.29951 5.30794 5.37995 5.48283 6.05803 6.26070 7.32241 8.07824 8.32085 9.27171 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051211 B = 0.008151 C = 0.007476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.625856 B = 3434.357604 C = 3744.342752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 H 0.082 0.918 4 C -0.137 4.137 5 C -0.124 4.124 6 H 0.080 0.920 7 C 0.165 3.835 8 N -0.745 5.745 9 C -0.248 4.248 10 H 0.074 0.926 11 C -0.075 4.075 12 N -0.969 5.969 13 Si 0.974 3.026 14 H -0.287 1.287 15 H -0.294 1.294 16 H -0.269 1.269 17 C 0.084 3.916 18 H 0.083 0.917 19 C -0.151 4.151 20 O -0.388 6.388 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.030 0.970 27 H 0.017 0.983 28 H 0.374 0.626 29 H 0.252 0.748 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.301 5.186 11.750 13.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.014 3.986 3 H 0.100 0.900 4 C -0.175 4.175 5 C -0.143 4.143 6 H 0.098 0.902 7 C 0.039 3.961 8 N -0.388 5.388 9 C -0.379 4.379 10 H 0.092 0.908 11 C -0.267 4.267 12 N -0.620 5.620 13 Si 0.803 3.197 14 H -0.214 1.214 15 H -0.220 1.220 16 H -0.194 1.194 17 C 0.026 3.974 18 H 0.100 0.900 19 C -0.208 4.208 20 O -0.308 6.308 21 H 0.091 0.909 22 H 0.102 0.898 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.048 0.952 27 H 0.034 0.966 28 H 0.205 0.795 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.373 4.947 11.965 13.666 hybrid contribution 0.365 -0.508 -1.228 1.378 sum -4.008 4.439 10.737 12.290 Atomic orbital electron populations 1.21766 0.92052 1.02670 1.03370 1.23235 0.96104 0.95226 0.83997 0.90037 1.23156 0.95419 1.00245 0.98644 1.22703 0.98214 0.97447 0.95944 0.90194 1.20948 0.97251 0.94140 0.83791 1.42596 1.85276 1.07638 1.03256 1.19641 1.38667 0.88590 0.91039 0.90768 1.25576 1.03574 1.00480 0.97118 1.69817 1.58318 1.27878 1.05945 0.85128 0.77493 0.79223 0.77853 1.21425 1.22006 1.19409 1.22701 0.84539 0.97592 0.92555 0.89956 1.21998 1.02244 0.95328 1.01242 1.88824 1.28467 1.74005 1.39551 0.90892 0.89793 0.92839 0.92156 0.90555 0.95188 0.96556 0.79464 0.93962 0.92857 0.90439 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.66 71.98 0.70 -2.45 16 2 C 0.07 1.89 3.97 31.28 0.12 2.01 16 3 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 4 C -0.14 -4.39 6.02 31.96 0.19 -4.19 16 5 C -0.12 -4.15 3.06 -9.74 -0.03 -4.18 16 6 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 7 C 0.16 6.76 4.40 86.38 0.38 7.14 16 8 N -0.74 -38.65 5.50 -343.47 -1.89 -40.54 16 9 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 10 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 11 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 12 N -0.97 -59.71 13.06 21.65 0.28 -59.42 16 13 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 14 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 15 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 17 C 0.08 2.39 4.06 30.97 0.13 2.52 16 18 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 19 C -0.15 -4.04 8.38 71.98 0.60 -3.43 16 20 O -0.39 -11.56 10.89 -148.98 -1.62 -13.18 16 21 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.06 2.17 7.70 -2.39 -0.02 2.15 16 25 H 0.08 2.43 8.14 -2.38 -0.02 2.42 16 26 H 0.03 1.21 6.43 -2.39 -0.02 1.20 16 27 H 0.02 0.70 6.99 -2.38 -0.02 0.69 16 28 H 0.37 20.45 7.63 -92.71 -0.71 19.74 16 29 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 30 H 0.05 1.57 6.82 -2.38 -0.02 1.55 16 31 H 0.08 2.00 6.76 -2.39 -0.02 1.98 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -64.04 258.95 2.58 -61.46 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.38 Total: 22.90 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 3.40 Total: -19.75 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -1.60 Total: -99.96 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -1.62 Total: -13.18 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -64.04 2.58 -61.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686513837.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.707 kcal (2) G-P(sol) polarization free energy of solvation -64.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds