Wall clock time and date at job start Mon Mar 30 2020 02:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.27141 * 2 1 4 4 C 1.54943 * 110.30964 * 237.80057 * 2 1 3 5 5 C 1.55298 * 100.94227 * 204.64027 * 4 2 1 6 6 H 1.08999 * 111.02580 * 275.86413 * 5 4 2 7 7 C 1.53005 * 110.85250 * 152.32438 * 5 4 2 8 8 N 1.46505 * 109.46904 * 72.16742 * 7 5 4 9 9 C 1.36931 * 119.99788 * 180.02562 * 8 7 5 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 7 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48498 * 109.47174 * 90.00121 * 13 11 9 15 15 H 1.48501 * 109.47062 * 210.00072 * 13 11 9 16 16 H 1.48504 * 109.46913 * 329.99871 * 13 11 9 17 17 C 1.54378 * 102.25633 * 34.13526 * 5 4 2 18 18 H 1.09001 * 109.83474 * 98.14976 * 17 5 4 19 19 C 1.53001 * 109.83684 * 219.04216 * 17 5 4 20 20 O 1.43251 * 107.58591 * 338.64516 * 17 5 4 21 21 H 1.08995 * 109.47168 * 299.36372 * 1 2 3 22 22 H 1.09002 * 109.47204 * 59.36919 * 1 2 3 23 23 H 1.09007 * 109.46880 * 179.36560 * 1 2 3 24 24 H 1.09006 * 111.12652 * 86.72150 * 4 2 1 25 25 H 1.09001 * 111.12983 * 322.56304 * 4 2 1 26 26 H 1.09003 * 109.46946 * 312.17501 * 7 5 4 27 27 H 1.08993 * 109.47679 * 192.17044 * 7 5 4 28 28 H 0.97000 * 119.99792 * 0.02562 * 8 7 5 29 29 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 30 30 H 1.08998 * 109.47126 * 59.99036 * 19 17 5 31 31 H 1.08993 * 109.47386 * 179.97438 * 19 17 5 32 32 H 1.09005 * 109.46472 * 299.99755 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7743 -1.2296 5 6 3.4699 -1.2032 -0.7178 6 1 4.2001 -0.4074 -0.8645 7 6 3.9286 -2.4926 -1.4021 8 7 4.2792 -2.2076 -2.7957 9 6 4.7193 -3.2160 -3.6109 10 1 4.8075 -4.2215 -3.2266 11 6 5.0460 -2.9470 -4.9330 12 7 4.9380 -1.7218 -5.4014 13 14 5.6390 -4.3241 -6.0472 14 1 4.4743 -4.9508 -6.7224 15 1 6.5645 -3.7709 -7.0683 16 1 6.3498 -5.3454 -5.2365 17 6 3.2113 -1.4412 0.7855 18 1 3.0624 -2.5049 0.9713 19 6 4.4001 -0.9330 1.6037 20 8 2.0285 -0.7157 1.1414 21 1 -0.3633 0.5039 0.8956 22 1 -0.3634 0.5236 -0.8843 23 1 -0.3633 -1.0277 -0.0114 24 1 2.1497 -0.1224 -2.0994 25 1 1.4471 -1.6430 -1.4492 26 1 3.1226 -3.2259 -1.3729 27 1 4.8002 -2.8897 -0.8821 28 1 4.1996 -1.3046 -3.1409 29 1 5.1667 -1.5339 -6.3252 30 1 4.5340 0.1340 1.4257 31 1 4.2112 -1.1034 2.6635 32 1 5.3019 -1.4672 1.3044 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686513838.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:36 Heat of formation + Delta-G solvation = -52.728613 kcal Electronic energy + Delta-G solvation = -13037.016413 eV Core-core repulsion = 10804.235960 eV Total energy + Delta-G solvation = -2232.780453 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.55424 -35.00339 -32.69402 -32.30322 -30.29614 -28.48824 -25.68382 -23.55405 -22.00183 -20.73594 -19.92400 -17.06782 -16.63304 -15.36103 -14.54924 -14.23174 -14.04247 -13.30079 -13.22853 -12.87962 -12.63837 -12.48695 -12.07234 -11.64714 -11.43136 -11.21270 -10.93263 -10.82393 -10.44408 -10.37259 -10.20710 -9.99423 -9.66916 -9.27878 -8.87537 -6.92706 -5.77130 -3.05711 3.43415 3.48436 3.50227 3.98479 4.56484 4.83338 5.00050 5.04197 5.34432 5.41251 5.50905 5.54786 5.58178 5.70448 5.82573 5.86090 6.00452 6.10795 6.13349 6.19746 6.31645 6.36625 6.41048 6.50079 6.73035 6.86053 7.31594 7.69527 8.41734 9.53009 10.10610 10.45797 11.45844 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.052132 B = 0.007761 C = 0.007166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.970640 B = 3606.901556 C = 3906.143965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.073 3.927 3 H 0.065 0.935 4 C -0.138 4.138 5 C -0.123 4.123 6 H 0.084 0.916 7 C 0.165 3.835 8 N -0.731 5.731 9 C -0.240 4.240 10 H 0.070 0.930 11 C -0.014 4.014 12 N -0.934 5.934 13 Si 0.908 3.092 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.082 3.918 18 H 0.079 0.921 19 C -0.159 4.159 20 O -0.382 6.382 21 H 0.057 0.943 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.384 0.616 29 H 0.255 0.745 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.379 3.035 10.975 12.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 H 0.083 0.917 4 C -0.176 4.176 5 C -0.142 4.142 6 H 0.103 0.897 7 C 0.037 3.963 8 N -0.375 5.375 9 C -0.371 4.371 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.583 5.583 13 Si 0.739 3.261 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.207 1.207 17 C 0.024 3.976 18 H 0.097 0.903 19 C -0.216 4.216 20 O -0.302 6.302 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.217 0.783 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.411 2.872 11.119 12.695 hybrid contribution 0.463 -0.412 -1.045 1.215 sum -4.948 2.460 10.074 11.490 Atomic orbital electron populations 1.21867 0.94181 1.02639 1.01881 1.22956 0.94413 0.95443 0.85607 0.91713 1.23296 0.95940 1.00754 0.97621 1.22950 0.97463 1.00382 0.93441 0.89739 1.20596 0.96575 0.92591 0.86552 1.42332 1.79624 1.09644 1.05937 1.19244 1.36031 0.90074 0.91761 0.91174 1.24743 1.02507 0.96548 0.97223 1.69660 1.55053 1.18203 1.15342 0.86178 0.78196 0.81146 0.80614 1.21722 1.21753 1.20746 1.22681 0.85139 0.95953 0.93801 0.90347 1.22118 0.97709 1.01693 1.00102 1.88372 1.42464 1.64937 1.34421 0.92390 0.91363 0.92027 0.89860 0.90248 0.96120 0.96162 0.78273 0.93522 0.92479 0.92465 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.62 37.16 0.36 -1.42 16 2 C 0.07 1.03 4.08 -25.70 -0.10 0.93 16 3 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.14 -2.22 5.97 -24.49 -0.15 -2.36 16 5 C -0.12 -2.09 2.53 -88.68 -0.22 -2.32 16 6 H 0.08 1.47 7.85 -51.93 -0.41 1.06 16 7 C 0.16 3.37 5.56 -4.04 -0.02 3.35 16 8 N -0.73 -18.71 5.54 -59.90 -0.33 -19.04 16 9 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 12 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 13 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.08 1.24 3.76 -26.01 -0.10 1.14 16 18 H 0.08 1.17 7.81 -51.93 -0.41 0.76 16 19 C -0.16 -2.10 9.44 37.16 0.35 -1.75 16 20 O -0.38 -5.98 10.70 -35.23 -0.38 -6.36 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 24 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.08 1.32 7.84 -51.93 -0.41 0.91 16 26 H 0.02 0.43 7.99 -51.93 -0.41 0.02 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.38 10.26 7.67 -40.82 -0.31 9.94 16 29 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 265.20 15.07 4.00 4.00 Total: -1.00 -30.35 265.20 -6.44 -36.80 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.30 Total: 4.62 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -0.13 Total: -9.88 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.39 Total: -46.68 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.38 Total: -6.36 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.35 -6.44 -36.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686513838.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.931 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds