Wall clock time and date at job start Mon Mar 30 2020 02:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.27141 * 2 1 4 4 C 1.54943 * 110.30964 * 237.80057 * 2 1 3 5 5 C 1.55298 * 100.94227 * 204.64027 * 4 2 1 6 6 H 1.08999 * 111.02580 * 275.86413 * 5 4 2 7 7 C 1.53005 * 110.85250 * 152.32438 * 5 4 2 8 8 N 1.46505 * 109.46904 * 72.16742 * 7 5 4 9 9 C 1.36931 * 119.99788 * 180.02562 * 8 7 5 10 10 H 1.08002 * 120.00438 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99680 * 179.72358 * 9 8 7 12 12 N 1.31614 * 119.99888 * 0.27479 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27671 * 11 9 8 14 14 H 1.48498 * 109.47174 * 90.00121 * 13 11 9 15 15 H 1.48501 * 109.47062 * 210.00072 * 13 11 9 16 16 H 1.48504 * 109.46913 * 329.99871 * 13 11 9 17 17 C 1.54378 * 102.25633 * 34.13526 * 5 4 2 18 18 H 1.09001 * 109.83474 * 98.14976 * 17 5 4 19 19 C 1.53001 * 109.83684 * 219.04216 * 17 5 4 20 20 O 1.43251 * 107.58591 * 338.64516 * 17 5 4 21 21 H 1.08995 * 109.47168 * 299.36372 * 1 2 3 22 22 H 1.09002 * 109.47204 * 59.36919 * 1 2 3 23 23 H 1.09007 * 109.46880 * 179.36560 * 1 2 3 24 24 H 1.09006 * 111.12652 * 86.72150 * 4 2 1 25 25 H 1.09001 * 111.12983 * 322.56304 * 4 2 1 26 26 H 1.09003 * 109.46946 * 312.17501 * 7 5 4 27 27 H 1.08993 * 109.47679 * 192.17044 * 7 5 4 28 28 H 0.97000 * 119.99792 * 0.02562 * 8 7 5 29 29 H 0.97005 * 119.99715 * 179.97438 * 12 11 9 30 30 H 1.08998 * 109.47126 * 59.99036 * 19 17 5 31 31 H 1.08993 * 109.47386 * 179.97438 * 19 17 5 32 32 H 1.09005 * 109.46472 * 299.99755 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7743 -1.2296 5 6 3.4699 -1.2032 -0.7178 6 1 4.2001 -0.4074 -0.8645 7 6 3.9286 -2.4926 -1.4021 8 7 4.2792 -2.2076 -2.7957 9 6 4.7193 -3.2160 -3.6109 10 1 4.8075 -4.2215 -3.2266 11 6 5.0460 -2.9470 -4.9330 12 7 4.9380 -1.7218 -5.4014 13 14 5.6390 -4.3241 -6.0472 14 1 4.4743 -4.9508 -6.7224 15 1 6.5645 -3.7709 -7.0683 16 1 6.3498 -5.3454 -5.2365 17 6 3.2113 -1.4412 0.7855 18 1 3.0624 -2.5049 0.9713 19 6 4.4001 -0.9330 1.6037 20 8 2.0285 -0.7157 1.1414 21 1 -0.3633 0.5039 0.8956 22 1 -0.3634 0.5236 -0.8843 23 1 -0.3633 -1.0277 -0.0114 24 1 2.1497 -0.1224 -2.0994 25 1 1.4471 -1.6430 -1.4492 26 1 3.1226 -3.2259 -1.3729 27 1 4.8002 -2.8897 -0.8821 28 1 4.1996 -1.3046 -3.1409 29 1 5.1667 -1.5339 -6.3252 30 1 4.5340 0.1340 1.4257 31 1 4.2112 -1.1034 2.6635 32 1 5.3019 -1.4672 1.3044 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686513838.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:35 Heat of formation + Delta-G solvation = -72.445114 kcal Electronic energy + Delta-G solvation = -13037.871385 eV Core-core repulsion = 10804.235960 eV Total energy + Delta-G solvation = -2233.635425 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.80535 -36.81044 -34.29724 -33.58473 -32.07201 -29.71468 -27.34186 -25.23861 -23.49713 -22.04557 -21.28064 -19.11429 -17.90100 -16.74515 -16.44470 -15.57422 -15.44473 -15.05066 -14.93684 -14.25581 -13.82087 -13.58269 -13.44192 -13.09026 -12.80927 -12.71091 -12.59379 -12.39611 -12.10892 -11.96160 -11.73459 -11.52177 -11.43910 -10.94486 -10.44505 -9.02619 -7.96987 -5.26196 1.46969 1.48683 1.57265 2.54506 2.81615 3.36041 3.48326 3.74322 3.79954 4.12709 4.21653 4.33965 4.41097 4.45060 4.56386 4.61882 4.72498 4.82430 4.91569 5.00313 5.08450 5.11101 5.17769 5.26603 5.32463 5.39073 5.47884 6.13321 6.25012 7.31679 8.05948 8.30673 9.26510 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.052132 B = 0.007761 C = 0.007166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.970640 B = 3606.901556 C = 3906.143965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 H 0.075 0.925 4 C -0.138 4.138 5 C -0.118 4.118 6 H 0.079 0.921 7 C 0.165 3.835 8 N -0.743 5.743 9 C -0.249 4.249 10 H 0.075 0.925 11 C -0.074 4.074 12 N -0.968 5.968 13 Si 0.975 3.025 14 H -0.286 1.286 15 H -0.294 1.294 16 H -0.269 1.269 17 C 0.085 3.915 18 H 0.081 0.919 19 C -0.155 4.155 20 O -0.390 6.390 21 H 0.070 0.930 22 H 0.081 0.919 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.020 0.980 27 H 0.024 0.976 28 H 0.375 0.625 29 H 0.252 0.748 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.600 2.686 11.824 13.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.018 3.982 3 H 0.093 0.907 4 C -0.176 4.176 5 C -0.137 4.137 6 H 0.098 0.902 7 C 0.039 3.961 8 N -0.386 5.386 9 C -0.381 4.381 10 H 0.093 0.907 11 C -0.266 4.266 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.214 1.214 15 H -0.220 1.220 16 H -0.194 1.194 17 C 0.028 3.972 18 H 0.098 0.902 19 C -0.212 4.212 20 O -0.311 6.311 21 H 0.089 0.911 22 H 0.100 0.900 23 H 0.075 0.925 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.038 0.962 27 H 0.042 0.958 28 H 0.207 0.793 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.642 2.505 12.009 13.503 hybrid contribution 0.509 -0.305 -1.258 1.390 sum -5.133 2.200 10.752 12.116 Atomic orbital electron populations 1.21868 0.92388 1.02800 1.03190 1.23050 0.95855 0.95306 0.83997 0.90741 1.23254 0.95392 1.00566 0.98358 1.22834 0.97742 0.98323 0.94796 0.90234 1.20701 0.96507 0.94483 0.84429 1.42514 1.79607 1.08745 1.07687 1.19648 1.35216 0.90855 0.92396 0.90687 1.25581 1.03395 0.98899 0.98773 1.69814 1.56490 1.20161 1.15430 0.85123 0.77567 0.78481 0.78481 1.21350 1.22039 1.19417 1.22667 0.85853 0.96311 0.92416 0.90154 1.22087 0.96819 1.01714 1.00606 1.88365 1.42589 1.65180 1.34926 0.91139 0.90018 0.92454 0.90688 0.91168 0.96204 0.95789 0.79337 0.93928 0.92338 0.91030 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.62 71.98 0.69 -2.49 16 2 C 0.07 2.00 4.08 31.26 0.13 2.13 16 3 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.14 -4.34 5.97 32.05 0.19 -4.15 16 5 C -0.12 -3.92 2.53 -9.53 -0.02 -3.95 16 6 H 0.08 2.73 7.85 -2.39 -0.02 2.71 16 7 C 0.17 6.71 5.56 86.38 0.48 7.20 16 8 N -0.74 -38.19 5.54 -343.44 -1.90 -40.09 16 9 C -0.25 -14.10 9.99 84.04 0.84 -13.26 16 10 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 11 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 12 N -0.97 -59.36 13.06 21.65 0.28 -59.08 16 13 Si 0.97 46.21 29.55 68.60 2.03 48.24 16 14 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 15 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 17 C 0.09 2.45 3.76 31.06 0.12 2.56 16 18 H 0.08 2.27 7.81 -2.39 -0.02 2.25 16 19 C -0.15 -3.79 9.44 71.98 0.68 -3.11 16 20 O -0.39 -11.48 10.70 -148.98 -1.59 -13.07 16 21 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 25 H 0.07 2.32 7.84 -2.39 -0.02 2.30 16 26 H 0.02 0.82 7.99 -2.39 -0.02 0.80 16 27 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.37 20.35 7.67 -92.71 -0.71 19.63 16 29 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 30 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -62.96 265.20 2.75 -60.21 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.37 Total: 22.67 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 3.57 Total: -18.88 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -1.62 Total: -99.16 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: -1.59 Total: -13.07 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -62.96 2.75 -60.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686513838.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.232 kcal (2) G-P(sol) polarization free energy of solvation -62.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds