Wall clock time and date at job start Mon Mar 30 2020 02:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47927 * 2 1 4 4 C 1.53100 * 109.49385 * 119.94729 * 2 1 3 5 5 C 1.53179 * 109.15719 * 177.50987 * 4 2 1 6 6 C 1.53177 * 109.10692 * 303.14927 * 5 4 2 7 7 C 1.53089 * 109.16584 * 56.93603 * 6 5 4 8 8 H 1.09006 * 109.47817 * 62.37062 * 7 6 5 9 9 C 1.52994 * 109.48503 * 182.39558 * 7 6 5 10 10 N 1.46498 * 109.47488 * 185.00074 * 9 7 6 11 11 C 1.36939 * 119.99804 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00471 * 359.97438 * 11 10 9 13 13 C 1.38817 * 119.99469 * 180.02562 * 11 10 9 14 14 N 1.31615 * 120.00097 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99699 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47275 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47279 * 119.99611 * 15 13 11 18 18 H 1.48505 * 109.47126 * 239.99597 * 15 13 11 19 19 O 1.42902 * 109.41513 * 302.39390 * 7 6 5 20 20 H 1.09008 * 109.46802 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46780 * 300.01502 * 1 2 3 22 22 H 1.09000 * 109.47339 * 60.01756 * 1 2 3 23 23 H 1.08997 * 109.45514 * 57.64308 * 4 2 1 24 24 H 1.08999 * 109.59440 * 297.45528 * 4 2 1 25 25 H 1.09002 * 109.54484 * 183.23723 * 5 4 2 26 26 H 1.08999 * 109.54222 * 63.05889 * 5 4 2 27 27 H 1.08999 * 109.51892 * 176.84392 * 6 5 4 28 28 H 1.09000 * 109.52369 * 297.02547 * 6 5 4 29 29 H 1.09009 * 109.47038 * 305.00397 * 9 7 6 30 30 H 1.09004 * 109.46995 * 64.99889 * 9 7 6 31 31 H 0.97000 * 119.99784 * 359.97438 * 10 9 7 32 32 H 0.97002 * 119.99722 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0409 -0.7205 1.2505 5 6 3.5714 -0.7707 1.2118 6 6 4.0179 -1.4596 -0.0814 7 6 3.4307 -0.7089 -1.2794 8 1 3.8190 0.3095 -1.2960 9 6 3.8228 -1.4257 -2.5729 10 7 3.3632 -0.6436 -3.7233 11 6 3.6020 -1.0916 -4.9951 12 1 4.1294 -2.0212 -5.1502 13 6 3.1669 -0.3503 -6.0852 14 7 2.5245 0.7828 -5.8962 15 14 3.4919 -0.9617 -7.8201 16 1 4.2258 -2.2513 -7.7611 17 1 2.2002 -1.1587 -8.5256 18 1 4.3085 0.0391 -8.5528 19 8 2.0066 -0.6740 -1.1666 20 1 -0.3633 -1.0278 0.0005 21 1 -0.3633 0.5141 0.8899 22 1 -0.3634 0.5136 -0.8901 23 1 1.6436 -1.7352 1.2727 24 1 1.7166 -0.1818 2.1409 25 1 3.9397 -1.3325 2.0702 26 1 3.9703 0.2433 1.2412 27 1 5.1061 -1.4491 -0.1427 28 1 3.6618 -2.4898 -0.0870 29 1 4.9069 -1.5316 -2.6153 30 1 3.3602 -2.4124 -2.5961 31 1 2.8892 0.1911 -3.5841 32 1 2.2202 1.3006 -6.6579 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688920076.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:17 Heat of formation + Delta-G solvation = -54.365439 kcal Electronic energy + Delta-G solvation = -13103.995196 eV Core-core repulsion = 10871.143765 eV Total energy + Delta-G solvation = -2232.851431 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.20416 -34.76973 -33.33459 -32.64022 -30.59039 -27.95562 -25.54547 -23.26985 -21.97719 -20.96613 -20.03938 -17.02606 -16.15356 -15.42353 -14.76081 -14.46114 -14.06030 -13.71468 -13.03757 -12.60473 -12.56284 -12.30013 -12.06049 -11.77452 -11.45151 -10.97874 -10.89777 -10.77497 -10.68919 -10.41147 -10.06722 -9.78976 -9.59791 -8.95693 -8.80367 -6.80940 -5.66759 -2.94627 3.49062 3.54035 3.56764 4.10528 4.65468 4.86367 4.94827 5.01747 5.16361 5.42098 5.51147 5.62786 5.66957 5.73697 5.78826 5.89565 5.94342 5.99561 6.08085 6.22968 6.24297 6.36219 6.41604 6.47615 6.71996 6.87663 7.77161 7.81226 8.51857 9.63176 10.22744 10.58692 11.56307 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.055350 B = 0.008011 C = 0.007273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.752394 B = 3494.386356 C = 3848.813756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.083 3.917 3 H 0.052 0.948 4 C -0.149 4.149 5 C -0.121 4.121 6 C -0.148 4.148 7 C 0.086 3.914 8 H 0.055 0.945 9 C 0.161 3.839 10 N -0.728 5.728 11 C -0.237 4.237 12 H 0.070 0.930 13 C -0.016 4.016 14 N -0.932 5.932 15 Si 0.907 3.093 16 H -0.281 1.281 17 H -0.292 1.292 18 H -0.292 1.292 19 O -0.360 6.360 20 H 0.060 0.940 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.025 0.975 31 H 0.387 0.613 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.045 -2.073 14.748 14.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.025 3.975 3 H 0.070 0.930 4 C -0.187 4.187 5 C -0.159 4.159 6 C -0.186 4.186 7 C 0.028 3.972 8 H 0.073 0.927 9 C 0.034 3.966 10 N -0.372 5.372 11 C -0.368 4.368 12 H 0.088 0.912 13 C -0.212 4.212 14 N -0.581 5.581 15 Si 0.738 3.262 16 H -0.206 1.206 17 H -0.219 1.219 18 H -0.220 1.220 19 O -0.279 6.279 20 H 0.079 0.921 21 H 0.082 0.918 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.221 0.779 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.110 -2.267 14.471 14.648 hybrid contribution 0.179 0.098 -0.701 0.730 sum 0.069 -2.169 13.770 13.940 Atomic orbital electron populations 1.21733 0.93537 1.02651 1.02114 1.22010 0.94899 0.95036 0.85575 0.92975 1.22228 0.96146 1.01808 0.98475 1.21583 0.95669 1.00824 0.97781 1.22166 1.01012 1.00564 0.94891 1.22364 0.81113 0.98688 0.95067 0.92657 1.20683 0.96299 0.94529 0.85112 1.42293 1.68637 1.25794 1.00501 1.19297 1.29911 1.04247 0.83332 0.91182 1.24743 1.01296 0.97326 0.97828 1.69690 1.43948 1.15088 1.29396 0.86113 0.77298 0.77725 0.85059 1.20598 1.21909 1.21950 1.88092 1.20887 1.77283 1.41681 0.92069 0.91768 0.91538 0.91277 0.91515 0.91914 0.92052 0.91008 0.91138 0.95128 0.95673 0.77943 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.57 37.16 0.36 -1.54 16 2 C 0.08 1.24 3.26 -26.68 -0.09 1.15 16 3 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.15 -1.81 5.43 -26.59 -0.14 -1.96 16 5 C -0.12 -1.45 6.02 -26.55 -0.16 -1.61 16 6 C -0.15 -2.09 5.42 -26.59 -0.14 -2.24 16 7 C 0.09 1.56 2.68 -26.69 -0.07 1.49 16 8 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 9 C 0.16 3.53 5.93 -4.05 -0.02 3.51 16 10 N -0.73 -19.89 5.55 -59.91 -0.33 -20.22 16 11 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 12 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 13 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 14 N -0.93 -29.39 13.06 55.49 0.72 -28.67 16 15 Si 0.91 23.15 29.55 -169.99 -5.02 18.12 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 17 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 18 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 19 O -0.36 -6.97 10.00 -35.23 -0.35 -7.33 16 20 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.03 0.65 8.14 -51.92 -0.42 0.22 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.39 11.20 7.67 -40.82 -0.31 10.89 16 32 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 262.92 15.07 3.96 3.96 Total: -1.00 -32.21 262.92 -6.90 -39.11 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.35 Total: 3.92 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -0.52 Total: -8.90 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.39 Total: -48.89 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.35 Total: -7.33 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.21 -6.90 -39.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688920076.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.259 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds