Wall clock time and date at job start Mon Mar 30 2020 02:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.48027 * 2 1 4 4 C 1.53099 * 109.48003 * 239.97498 * 2 1 3 5 5 C 1.53181 * 109.15930 * 182.40769 * 4 2 1 6 6 C 1.53178 * 109.03268 * 56.98716 * 5 4 2 7 7 C 1.53097 * 109.16519 * 303.01333 * 6 5 4 8 8 H 1.09004 * 109.47936 * 297.61860 * 7 6 5 9 9 C 1.52996 * 109.47915 * 177.59227 * 7 6 5 10 10 N 1.46504 * 109.46681 * 179.97438 * 9 7 6 11 11 C 1.36943 * 119.99781 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99788 * 359.97438 * 11 10 9 13 13 C 1.38811 * 119.99622 * 180.27904 * 11 10 9 14 14 N 1.31622 * 119.99400 * 179.72313 * 13 11 10 15 15 Si 1.86800 * 120.00144 * 359.72086 * 13 11 10 16 16 H 1.48506 * 109.46719 * 90.00417 * 15 13 11 17 17 H 1.48501 * 109.46793 * 210.00071 * 15 13 11 18 18 H 1.48489 * 109.47333 * 330.00315 * 15 13 11 19 19 O 1.42898 * 109.41216 * 57.61290 * 7 6 5 20 20 H 1.09006 * 109.47460 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47468 * 300.02103 * 1 2 3 22 22 H 1.09003 * 109.46772 * 60.02394 * 1 2 3 23 23 H 1.09000 * 109.51565 * 62.51000 * 4 2 1 24 24 H 1.08991 * 109.57608 * 302.34985 * 4 2 1 25 25 H 1.08994 * 109.54476 * 297.12127 * 5 4 2 26 26 H 1.09000 * 109.53977 * 176.85152 * 5 4 2 27 27 H 1.09000 * 109.52215 * 183.10809 * 6 5 4 28 28 H 1.09005 * 109.52588 * 62.92389 * 6 5 4 29 29 H 1.09006 * 109.47179 * 60.00519 * 9 7 6 30 30 H 1.08997 * 109.47540 * 299.99982 * 9 7 6 31 31 H 0.97000 * 120.00410 * 0.02562 * 10 9 7 32 32 H 0.97009 * 119.99492 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2497 5 6 3.5711 -0.7708 -1.2122 6 6 4.0175 -1.4602 0.0808 7 6 3.4306 -0.7096 1.2791 8 1 3.8193 0.3087 1.2961 9 6 3.8225 -1.4271 2.5723 10 7 3.2612 -0.7082 3.7188 11 6 3.4822 -1.1676 4.9899 12 1 4.0698 -2.0600 5.1470 13 6 2.9456 -0.4897 6.0759 14 7 3.1534 -0.9343 7.2971 15 14 1.9286 1.0534 5.8040 16 1 0.4993 0.6827 5.6455 17 1 2.0789 1.9575 6.9725 18 1 2.3990 1.7467 4.5780 19 8 2.0065 -0.6744 1.1664 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5141 0.8897 22 1 -0.3633 0.5135 -0.8902 23 1 1.7149 -0.1840 -2.1398 24 1 1.6443 -1.7373 -1.2723 25 1 3.9689 0.2436 -1.2406 26 1 3.9392 -1.3325 -2.0708 27 1 5.1057 -1.4500 0.1420 28 1 3.6612 -2.4904 0.0861 29 1 4.9089 -1.4547 2.6576 30 1 3.4334 -2.4451 2.5553 31 1 2.7331 0.0931 3.5777 32 1 2.7787 -0.4604 8.0561 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688920078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:18 Heat of formation + Delta-G solvation = -50.541222 kcal Electronic energy + Delta-G solvation = -13196.763124 eV Core-core repulsion = 10964.077523 eV Total energy + Delta-G solvation = -2232.685601 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.35225 -34.97358 -33.46029 -32.70388 -30.92665 -28.28219 -25.76976 -23.13827 -21.93183 -21.03359 -20.15422 -17.54934 -16.29811 -15.55441 -14.77272 -14.47571 -14.27642 -13.89540 -12.93989 -12.76841 -12.62348 -12.48920 -12.19109 -11.92576 -11.65912 -11.25541 -10.99770 -10.85797 -10.76084 -10.49786 -10.12625 -9.88641 -9.51272 -9.11452 -8.81858 -7.12767 -5.69009 -3.02868 3.45570 3.50792 3.51970 3.95203 4.68291 4.75425 4.81007 4.91482 5.01980 5.28503 5.38544 5.49499 5.60081 5.61856 5.67442 5.74385 5.82550 5.85120 5.96331 6.04405 6.11415 6.17013 6.26259 6.34493 6.60462 6.76094 7.63681 8.07843 8.50453 9.30931 10.03631 10.25057 11.49590 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.044703 B = 0.009756 C = 0.008430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.202999 B = 2869.278782 C = 3320.825647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.082 3.918 3 H 0.052 0.948 4 C -0.149 4.149 5 C -0.121 4.121 6 C -0.148 4.148 7 C 0.082 3.918 8 H 0.055 0.945 9 C 0.166 3.834 10 N -0.752 5.752 11 C -0.241 4.241 12 H 0.090 0.910 13 C 0.002 3.998 14 N -0.937 5.937 15 Si 0.887 3.113 16 H -0.284 1.284 17 H -0.292 1.292 18 H -0.278 1.278 19 O -0.363 6.363 20 H 0.062 0.938 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.039 0.961 30 H 0.033 0.967 31 H 0.365 0.635 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.710 2.130 -18.533 18.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.024 3.976 3 H 0.070 0.930 4 C -0.186 4.186 5 C -0.159 4.159 6 C -0.186 4.186 7 C 0.024 3.976 8 H 0.073 0.927 9 C 0.039 3.961 10 N -0.397 5.397 11 C -0.371 4.371 12 H 0.107 0.893 13 C -0.193 4.193 14 N -0.585 5.585 15 Si 0.717 3.283 16 H -0.210 1.210 17 H -0.219 1.219 18 H -0.204 1.204 19 O -0.283 6.283 20 H 0.082 0.918 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.198 0.802 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.751 1.900 -18.205 18.388 hybrid contribution -0.544 1.206 -0.290 1.354 sum -2.295 3.106 -18.495 18.894 Atomic orbital electron populations 1.21745 0.93472 1.02852 1.02073 1.22039 0.94933 0.94966 0.85685 0.93004 1.22220 0.96198 1.01887 0.98332 1.21587 0.95608 1.00818 0.97867 1.22156 1.01134 1.00652 0.94646 1.22429 0.81105 0.98682 0.95418 0.92749 1.20674 0.96276 0.95044 0.84115 1.42602 1.63764 1.30983 1.02362 1.19086 1.27468 1.09010 0.81520 0.89264 1.24654 1.00618 0.98967 0.95067 1.69716 1.50054 1.41412 0.97328 0.86493 0.80949 0.84147 0.76669 1.21019 1.21892 1.20414 1.88075 1.20950 1.77381 1.41846 0.91845 0.91764 0.91612 0.91465 0.91110 0.92070 0.91739 0.90834 0.90900 0.94301 0.94871 0.80244 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.56 37.16 0.36 -1.41 16 2 C 0.08 1.13 3.27 -26.68 -0.09 1.04 16 3 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 4 C -0.15 -1.68 5.42 -26.59 -0.14 -1.82 16 5 C -0.12 -1.34 6.03 -26.55 -0.16 -1.50 16 6 C -0.15 -1.95 5.42 -26.59 -0.14 -2.10 16 7 C 0.08 1.39 2.73 -26.68 -0.07 1.32 16 8 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 9 C 0.17 3.46 5.95 -4.04 -0.02 3.43 16 10 N -0.75 -19.30 5.30 -59.91 -0.32 -19.62 16 11 C -0.24 -7.19 10.47 -15.06 -0.16 -7.35 16 12 H 0.09 2.81 8.06 -52.49 -0.42 2.38 16 13 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 14 N -0.94 -30.40 13.97 55.49 0.78 -29.62 16 15 Si 0.89 23.32 27.73 -169.99 -4.71 18.61 16 16 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 17 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 18 H -0.28 -6.95 6.52 56.52 0.37 -6.58 16 19 O -0.36 -6.56 9.79 -35.23 -0.35 -6.91 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.36 9.32 5.41 -40.82 -0.22 9.09 16 32 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 LS Contribution 259.51 15.07 3.91 3.91 Total: -1.00 -32.87 259.51 -6.53 -39.40 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.31 Total: 2.65 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -0.53 Total: -8.41 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.46 Total: -49.24 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.35 Total: -6.91 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.71 Total: 18.61 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.87 -6.53 -39.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688920078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.144 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds