Wall clock time and date at job start Mon Mar 30 2020 02:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.48027 * 2 1 4 4 C 1.53099 * 109.48003 * 239.97498 * 2 1 3 5 5 C 1.53181 * 109.15930 * 182.40769 * 4 2 1 6 6 C 1.53178 * 109.03268 * 56.98716 * 5 4 2 7 7 C 1.53097 * 109.16519 * 303.01333 * 6 5 4 8 8 H 1.09004 * 109.47936 * 297.61860 * 7 6 5 9 9 C 1.52996 * 109.47915 * 177.59227 * 7 6 5 10 10 N 1.46504 * 109.46681 * 179.97438 * 9 7 6 11 11 C 1.36943 * 119.99781 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99788 * 359.97438 * 11 10 9 13 13 C 1.38811 * 119.99622 * 180.27904 * 11 10 9 14 14 N 1.31622 * 119.99400 * 179.72313 * 13 11 10 15 15 Si 1.86800 * 120.00144 * 359.72086 * 13 11 10 16 16 H 1.48506 * 109.46719 * 90.00417 * 15 13 11 17 17 H 1.48501 * 109.46793 * 210.00071 * 15 13 11 18 18 H 1.48489 * 109.47333 * 330.00315 * 15 13 11 19 19 O 1.42898 * 109.41216 * 57.61290 * 7 6 5 20 20 H 1.09006 * 109.47460 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47468 * 300.02103 * 1 2 3 22 22 H 1.09003 * 109.46772 * 60.02394 * 1 2 3 23 23 H 1.09000 * 109.51565 * 62.51000 * 4 2 1 24 24 H 1.08991 * 109.57608 * 302.34985 * 4 2 1 25 25 H 1.08994 * 109.54476 * 297.12127 * 5 4 2 26 26 H 1.09000 * 109.53977 * 176.85152 * 5 4 2 27 27 H 1.09000 * 109.52215 * 183.10809 * 6 5 4 28 28 H 1.09005 * 109.52588 * 62.92389 * 6 5 4 29 29 H 1.09006 * 109.47179 * 60.00519 * 9 7 6 30 30 H 1.08997 * 109.47540 * 299.99982 * 9 7 6 31 31 H 0.97000 * 120.00410 * 0.02562 * 10 9 7 32 32 H 0.97009 * 119.99492 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2497 5 6 3.5711 -0.7708 -1.2122 6 6 4.0175 -1.4602 0.0808 7 6 3.4306 -0.7096 1.2791 8 1 3.8193 0.3087 1.2961 9 6 3.8225 -1.4271 2.5723 10 7 3.2612 -0.7082 3.7188 11 6 3.4822 -1.1676 4.9899 12 1 4.0698 -2.0600 5.1470 13 6 2.9456 -0.4897 6.0759 14 7 3.1534 -0.9343 7.2971 15 14 1.9286 1.0534 5.8040 16 1 0.4993 0.6827 5.6455 17 1 2.0789 1.9575 6.9725 18 1 2.3990 1.7467 4.5780 19 8 2.0065 -0.6744 1.1664 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5141 0.8897 22 1 -0.3633 0.5135 -0.8902 23 1 1.7149 -0.1840 -2.1398 24 1 1.6443 -1.7373 -1.2723 25 1 3.9689 0.2436 -1.2406 26 1 3.9392 -1.3325 -2.0708 27 1 5.1057 -1.4500 0.1420 28 1 3.6612 -2.4904 0.0861 29 1 4.9089 -1.4547 2.6576 30 1 3.4334 -2.4451 2.5553 31 1 2.7331 0.0931 3.5777 32 1 2.7787 -0.4604 8.0561 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688920078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:18 Heat of formation + Delta-G solvation = -73.259141 kcal Electronic energy + Delta-G solvation = -13197.748246 eV Core-core repulsion = 10964.077523 eV Total energy + Delta-G solvation = -2233.670723 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.52025 -36.81769 -34.51552 -34.32242 -32.84133 -29.66715 -27.16341 -24.76357 -23.20044 -22.65143 -21.18895 -19.73466 -17.52633 -16.72499 -16.63834 -16.00891 -15.56395 -15.15550 -14.69413 -14.42493 -14.06903 -13.71334 -13.53028 -13.09578 -13.07238 -12.85093 -12.60119 -12.16579 -11.94685 -11.89004 -11.85857 -11.53113 -11.16669 -11.01599 -10.25946 -9.31852 -8.05183 -5.37786 1.34869 1.39278 1.46400 2.46666 2.77360 3.26576 3.52698 3.82506 3.92807 3.97704 4.16268 4.23367 4.30248 4.45872 4.53599 4.70953 4.77701 4.86556 4.91126 5.01588 5.03314 5.13819 5.18579 5.20426 5.31584 5.44746 5.71750 6.18844 6.45630 7.05373 7.82142 8.02362 9.16386 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.044703 B = 0.009756 C = 0.008430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.202999 B = 2869.278782 C = 3320.825647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 H 0.056 0.944 4 C -0.143 4.143 5 C -0.118 4.118 6 C -0.143 4.143 7 C 0.087 3.913 8 H 0.056 0.944 9 C 0.159 3.841 10 N -0.756 5.756 11 C -0.237 4.237 12 H 0.058 0.942 13 C -0.063 4.063 14 N -0.982 5.982 15 Si 0.958 3.042 16 H -0.280 1.280 17 H -0.290 1.290 18 H -0.257 1.257 19 O -0.398 6.398 20 H 0.057 0.943 21 H 0.047 0.953 22 H 0.097 0.903 23 H 0.094 0.906 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.023 0.977 31 H 0.366 0.634 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 3.437 -21.196 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.013 3.987 3 H 0.074 0.926 4 C -0.181 4.181 5 C -0.155 4.155 6 C -0.181 4.181 7 C 0.030 3.970 8 H 0.074 0.926 9 C 0.033 3.967 10 N -0.401 5.401 11 C -0.368 4.368 12 H 0.076 0.924 13 C -0.255 4.255 14 N -0.633 5.633 15 Si 0.785 3.215 16 H -0.207 1.207 17 H -0.216 1.216 18 H -0.182 1.182 19 O -0.318 6.318 20 H 0.076 0.924 21 H 0.067 0.933 22 H 0.115 0.885 23 H 0.113 0.887 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.199 0.801 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.174 3.201 -20.924 21.279 hybrid contribution -0.381 0.711 0.521 0.960 sum -2.555 3.912 -20.404 20.932 Atomic orbital electron populations 1.21786 0.92597 1.02750 1.02859 1.22366 0.95742 0.95174 0.85445 0.92598 1.22190 0.96321 1.01648 0.97941 1.21604 0.95430 1.01352 0.97133 1.22117 1.01743 1.00036 0.94187 1.22289 0.81416 0.98647 0.94680 0.92604 1.20886 0.96439 0.94617 0.84734 1.42635 1.64002 1.31355 1.02127 1.19098 1.26288 1.07837 0.83610 0.92371 1.25496 1.02481 1.02818 0.94695 1.69886 1.51758 1.43299 0.98363 0.85364 0.78932 0.79863 0.77353 1.20679 1.21595 1.18186 1.88017 1.21217 1.78260 1.44327 0.92381 0.93348 0.88451 0.88738 0.91578 0.91263 0.89430 0.89487 0.91403 0.93458 0.95940 0.80051 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.56 71.98 0.69 -2.49 16 2 C 0.07 1.76 3.27 30.63 0.10 1.86 16 3 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.14 -2.74 5.42 30.69 0.17 -2.58 16 5 C -0.12 -2.17 6.03 30.71 0.19 -1.99 16 6 C -0.14 -3.43 5.42 30.69 0.17 -3.26 16 7 C 0.09 2.85 2.73 30.63 0.08 2.93 16 8 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 9 C 0.16 6.59 5.95 86.38 0.51 7.11 16 10 N -0.76 -38.73 5.30 -343.44 -1.82 -40.55 16 11 C -0.24 -14.43 10.47 84.03 0.88 -13.55 16 12 H 0.06 3.81 8.06 -2.91 -0.02 3.79 16 13 C -0.06 -3.93 5.50 84.86 0.47 -3.46 16 14 N -0.98 -65.14 13.97 21.65 0.30 -64.84 16 15 Si 0.96 48.29 27.73 68.60 1.90 50.19 16 16 H -0.28 -13.93 7.11 99.48 0.71 -13.23 16 17 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 18 H -0.26 -11.93 6.52 99.48 0.65 -11.28 16 19 O -0.40 -13.86 9.79 -148.98 -1.46 -15.32 16 20 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 21 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.37 18.33 5.41 -92.71 -0.50 17.83 16 32 H 0.26 16.25 8.31 -92.70 -0.77 15.48 16 Total: -1.00 -71.29 259.51 2.69 -68.60 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.51 Total: 17.35 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 3.25 Total: -15.43 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -1.52 Total: -105.39 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -1.46 Total: -15.32 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 1.90 Total: 50.19 kcal Total: -71.29 2.69 -68.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688920078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.663 kcal (2) G-P(sol) polarization free energy of solvation -71.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds