Wall clock time and date at job start Mon Mar 30 2020 02:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47753 * 2 1 4 4 C 1.52996 * 109.47153 * 239.99723 * 2 1 3 5 5 C 1.50702 * 109.47159 * 175.00123 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46908 * 109.47004 * 120.00132 * 2 1 3 14 14 C 1.46901 * 110.99611 * 274.99818 * 13 2 1 15 15 C 1.53782 * 113.61212 * 254.13237 * 14 13 2 16 16 C 1.53951 * 87.02003 * 220.05110 * 15 14 13 17 17 O 1.42900 * 113.74281 * 139.94702 * 16 15 14 18 18 C 1.53782 * 87.11322 * 25.36473 * 16 15 14 19 19 H 1.09001 * 109.47101 * 300.00282 * 1 2 3 20 20 H 1.09000 * 109.46774 * 59.99989 * 1 2 3 21 21 H 1.08993 * 109.47136 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47066 * 55.00326 * 4 2 1 23 23 H 1.08994 * 109.47405 * 295.00156 * 4 2 1 24 24 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 25 25 H 1.00896 * 111.00371 * 151.04461 * 13 2 1 26 26 H 1.08999 * 112.85551 * 25.33118 * 14 13 2 27 27 H 1.09000 * 113.61694 * 334.57130 * 15 14 13 28 28 H 1.09003 * 113.61563 * 105.47535 * 15 14 13 29 29 H 1.09002 * 113.54244 * 270.81316 * 16 15 14 30 30 H 0.96695 * 114.00292 * 82.40405 * 17 16 15 31 31 H 1.08999 * 113.61389 * 220.08981 * 18 16 15 32 32 H 1.08998 * 113.69084 * 89.19313 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1981 -2.3550 8 7 3.5768 -1.8423 -3.2967 9 14 6.0931 -1.0729 -2.4295 10 1 6.6802 -1.6981 -1.2172 11 1 6.5885 -1.7772 -3.6395 12 1 6.4912 0.3564 -2.4915 13 7 2.0196 -0.6926 1.1995 14 6 2.0824 0.2226 2.3469 15 6 3.5130 0.6470 2.7188 16 6 3.0849 0.5097 4.1912 17 8 4.0838 -0.0761 5.0285 18 6 2.0219 -0.4909 3.7079 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.6054 -0.2618 -2.1369 23 1 1.7516 -1.7715 -1.2055 24 1 4.0615 -2.2523 -4.0302 25 1 2.9172 -1.1206 1.0288 26 1 1.3877 1.0580 2.2606 27 1 4.2743 -0.0722 2.4165 28 1 3.7551 1.6689 2.4270 29 1 2.6652 1.4245 4.6097 30 1 4.7552 0.5482 5.3358 31 1 1.0619 -0.3862 4.2134 32 1 2.3734 -1.5222 3.6762 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695809480.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:32 Heat of formation + Delta-G solvation = -45.222029 kcal Electronic energy + Delta-G solvation = -12985.614384 eV Core-core repulsion = 10753.159441 eV Total energy + Delta-G solvation = -2232.454943 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.19335 -36.16337 -34.31300 -32.35938 -28.96089 -27.38789 -25.44058 -23.49534 -22.42337 -19.69629 -19.11665 -17.42836 -16.33470 -15.41033 -14.95386 -14.62273 -14.29848 -13.13627 -13.04953 -12.64506 -12.18419 -11.88133 -11.73603 -11.48750 -11.22638 -11.01862 -10.72185 -10.64327 -10.60111 -10.35602 -10.09834 -9.63845 -9.20564 -9.06197 -8.38987 -7.58474 -6.02320 -4.05447 3.30972 3.36013 3.37785 4.27619 4.43298 4.82784 4.87742 4.97731 5.05545 5.31665 5.42222 5.61670 5.95294 5.97456 6.03558 6.17971 6.22266 6.28879 6.37538 6.47998 6.61995 6.94096 6.96034 7.56141 7.64488 7.70936 7.97356 8.08379 8.29822 8.38207 9.00551 9.58593 11.08586 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.030916 B = 0.010045 C = 0.007923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.462768 B = 2786.713866 C = 3533.382705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.087 3.913 3 H 0.029 0.971 4 C 0.020 3.980 5 C -0.524 4.524 6 H 0.051 0.949 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.890 3.110 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.670 5.670 14 C 0.073 3.927 15 C -0.197 4.197 16 C 0.072 3.928 17 O -0.561 6.561 18 C -0.118 4.118 19 H 0.035 0.965 20 H 0.047 0.953 21 H 0.055 0.945 22 H 0.021 0.979 23 H 0.026 0.974 24 H 0.261 0.739 25 H 0.358 0.642 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.372 0.628 31 H 0.067 0.933 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.604 5.497 11.721 13.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 H 0.047 0.953 4 C -0.018 4.018 5 C -0.562 4.562 6 H 0.070 0.930 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.717 3.283 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.303 5.303 14 C -0.039 4.039 15 C -0.236 4.236 16 C 0.013 3.987 17 O -0.366 6.366 18 C -0.156 4.156 19 H 0.055 0.945 20 H 0.067 0.933 21 H 0.074 0.926 22 H 0.039 0.961 23 H 0.044 0.956 24 H 0.071 0.929 25 H 0.180 0.820 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.219 0.781 31 H 0.086 0.914 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.562 4.586 11.569 12.706 hybrid contribution 2.203 1.172 -0.297 2.513 sum -0.359 5.758 11.273 12.663 Atomic orbital electron populations 1.21814 0.96772 1.01365 0.99406 1.21628 0.93265 0.95909 0.91468 0.95274 1.19282 0.95417 0.96214 0.90854 1.21139 0.92204 1.34437 1.08455 0.93046 1.24992 0.98222 0.95184 0.95723 1.69952 1.35580 1.35435 1.12025 0.86702 0.85944 0.78116 0.77496 1.20169 1.21265 1.20399 1.60468 1.34724 1.30989 1.04106 1.22696 0.94703 0.94844 0.91631 1.24443 0.99981 1.02267 0.96945 1.23331 0.90082 0.96538 0.88773 1.86541 1.40828 1.39962 1.69221 1.23182 0.96928 0.99946 0.95570 0.94544 0.93350 0.92628 0.96066 0.95599 0.92890 0.81967 0.89218 0.88946 0.91847 0.90640 0.78120 0.91387 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.40 37.16 0.35 -2.10 16 2 C 0.09 1.81 2.45 -67.71 -0.17 1.64 16 3 H 0.03 0.62 7.85 -51.93 -0.41 0.21 16 4 C 0.02 0.50 4.57 -27.88 -0.13 0.38 16 5 C -0.52 -14.42 8.12 -34.44 -0.28 -14.70 16 6 H 0.05 1.37 7.49 -52.49 -0.39 0.98 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.67 -13.03 6.42 -98.88 -0.63 -13.66 16 14 C 0.07 1.16 3.86 -66.90 -0.26 0.91 16 15 C -0.20 -2.95 7.55 -25.83 -0.20 -3.15 16 16 C 0.07 0.94 5.21 -25.83 -0.13 0.80 16 17 O -0.56 -7.41 13.68 -35.23 -0.48 -7.89 16 18 C -0.12 -1.70 7.71 -25.92 -0.20 -1.90 16 19 H 0.04 0.58 7.71 -51.93 -0.40 0.18 16 20 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 22 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.36 7.65 6.69 -39.29 -0.26 7.39 16 26 H 0.09 1.35 7.48 -51.93 -0.39 0.97 16 27 H 0.09 1.56 7.83 -51.93 -0.41 1.15 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.37 3.19 9.12 45.56 0.42 3.61 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 266.18 15.07 4.01 4.01 Total: -1.00 -30.10 266.18 -6.86 -36.96 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.36 Total: 6.47 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -1.11 Total: -16.51 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.10 Total: -39.54 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.48 Total: -7.89 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.10 -6.86 -36.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809480.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.266 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds