Wall clock time and date at job start Mon Mar 30 2020 02:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47224 * 2 1 4 4 C 1.52997 * 109.47666 * 239.99495 * 2 1 3 5 5 C 1.50694 * 109.47460 * 175.00013 * 4 2 1 6 6 H 1.08002 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 N 1.46900 * 109.47238 * 119.99523 * 2 1 3 14 14 C 1.46902 * 110.99994 * 275.00618 * 13 2 1 15 15 H 1.08996 * 110.45797 * 32.38959 * 14 13 2 16 16 C 1.54511 * 110.50993 * 154.99825 * 14 13 2 17 17 C 1.54481 * 104.06266 * 118.64392 * 16 14 13 18 18 O 1.44425 * 104.80342 * 23.97733 * 17 16 14 19 19 C 1.44424 * 105.27636 * 319.48629 * 18 17 16 20 20 H 1.09005 * 109.46761 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47274 * 300.00605 * 1 2 3 22 22 H 1.09002 * 109.46740 * 60.00621 * 1 2 3 23 23 H 1.09005 * 109.46800 * 55.00484 * 4 2 1 24 24 H 1.08998 * 109.47382 * 295.00283 * 4 2 1 25 25 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 26 26 H 1.00901 * 110.99661 * 38.95230 * 13 2 1 27 27 H 1.09001 * 110.50983 * 237.28574 * 16 14 13 28 28 H 1.08994 * 110.51300 * 359.85724 * 16 14 13 29 29 H 1.08999 * 110.37012 * 142.81059 * 17 16 14 30 30 H 1.08997 * 110.36777 * 265.03148 * 17 16 14 31 31 H 1.09003 * 110.37567 * 281.68587 * 19 18 17 32 32 H 1.08997 * 110.37590 * 159.34221 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3125 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1927 -2.3581 8 7 3.5766 -1.8371 -3.2997 9 14 6.0921 -1.0603 -2.4371 10 1 6.4699 0.1623 -3.1904 11 1 6.6417 -0.9827 -1.0597 12 1 6.6447 -2.2554 -3.1239 13 7 2.0197 -0.6924 1.1995 14 6 2.0823 0.2228 2.3469 15 1 1.2910 0.9695 2.2823 16 6 1.9778 -0.5635 3.6729 17 6 3.3121 -0.2656 4.3921 18 8 3.7604 0.9885 3.8335 19 6 3.4675 0.9027 2.4219 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.6055 -0.2618 -2.1369 24 1 1.7518 -1.7716 -1.2055 25 1 4.0609 -2.2433 -4.0355 26 1 1.4495 -1.4978 1.4101 27 1 1.1362 -0.2038 4.2648 28 1 1.8771 -1.6310 3.4770 29 1 3.1507 -0.1668 5.4656 30 1 4.0368 -1.0541 4.1891 31 1 4.2167 0.2944 1.9151 32 1 3.4254 1.8990 1.9818 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695814557.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:34 Heat of formation + Delta-G solvation = -77.584549 kcal Electronic energy + Delta-G solvation = -13168.037973 eV Core-core repulsion = 10934.179686 eV Total energy + Delta-G solvation = -2233.858287 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.42427 -37.79061 -34.85676 -33.07209 -30.53948 -29.25368 -28.23415 -25.08194 -23.73036 -21.66536 -21.30688 -18.38436 -17.39474 -17.14458 -16.50784 -16.11107 -15.62053 -15.43131 -14.64309 -14.18487 -14.01821 -13.61074 -13.25315 -13.19385 -12.76549 -12.47158 -12.35581 -12.33036 -12.09589 -11.80420 -11.71253 -11.11392 -11.09146 -10.73962 -10.47914 -9.06665 -8.09233 -6.13410 1.41300 1.42052 1.53272 2.47436 3.00619 3.24469 3.46614 3.64477 3.97881 4.11528 4.27516 4.38347 4.43072 4.50937 4.60246 4.81458 4.84867 4.88203 5.01210 5.02086 5.07767 5.23940 5.29901 5.52297 5.65585 5.83896 5.91732 6.33825 6.48949 6.72035 7.00816 7.52079 9.02911 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.032194 B = 0.010661 C = 0.008554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.512388 B = 2625.860016 C = 3272.634698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.098 3.902 3 H 0.057 0.943 4 C 0.037 3.963 5 C -0.496 4.496 6 H 0.057 0.943 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.269 1.269 12 H -0.286 1.286 13 N -0.671 5.671 14 C 0.057 3.943 15 H 0.061 0.939 16 C -0.148 4.148 17 C 0.043 3.957 18 O -0.399 6.399 19 C 0.053 3.947 20 H 0.055 0.945 21 H 0.065 0.935 22 H 0.055 0.945 23 H -0.008 1.008 24 H -0.008 1.008 25 H 0.258 0.742 26 H 0.342 0.658 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.367 3.011 13.405 14.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.012 4.012 3 H 0.076 0.924 4 C 0.000 4.000 5 C -0.535 4.535 6 H 0.075 0.925 7 C -0.203 4.203 8 N -0.583 5.583 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.193 1.193 12 H -0.212 1.212 13 N -0.304 5.304 14 C -0.053 4.053 15 H 0.079 0.921 16 C -0.186 4.186 17 C -0.033 4.033 18 O -0.318 6.318 19 C -0.025 4.025 20 H 0.074 0.926 21 H 0.084 0.916 22 H 0.074 0.926 23 H 0.010 0.990 24 H 0.011 0.989 25 H 0.067 0.933 26 H 0.162 0.838 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.131 0.869 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.570 3.180 13.221 14.059 hybrid contribution -0.021 -0.232 -0.606 0.649 sum -3.591 2.948 12.615 13.443 Atomic orbital electron populations 1.22411 0.96565 1.01907 1.01937 1.21516 0.92182 0.96780 0.90722 0.92437 1.18994 0.95073 0.94274 0.91666 1.21492 0.93411 1.32106 1.06448 0.92504 1.25844 1.02704 0.95805 0.95899 1.70092 1.36992 1.38147 1.13057 0.85620 0.80887 0.77377 0.78173 1.20204 1.19319 1.21231 1.60426 1.58415 1.08996 1.02528 1.22852 0.96571 0.95041 0.90861 0.92135 1.23112 0.99060 1.01587 0.94875 1.23517 0.94452 0.85855 0.99508 1.89046 1.84068 1.37508 1.21148 1.23465 0.96338 1.00795 0.81892 0.92631 0.91643 0.92585 0.99018 0.98945 0.93329 0.83782 0.88682 0.89256 0.86907 0.92607 0.93106 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.29 9.15 71.98 0.66 -4.63 16 2 C 0.10 3.81 2.40 44.91 0.11 3.92 16 3 H 0.06 2.31 7.86 -2.38 -0.02 2.29 16 4 C 0.04 1.93 4.65 29.85 0.14 2.07 16 5 C -0.50 -28.14 8.84 25.60 0.23 -27.91 16 6 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 7 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 8 N -0.94 -58.06 13.29 21.45 0.28 -57.77 16 9 Si 0.95 45.87 29.54 68.60 2.03 47.90 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 13 N -0.67 -23.57 5.77 -464.27 -2.68 -26.25 16 14 C 0.06 1.67 3.20 45.93 0.15 1.81 16 15 H 0.06 1.66 7.21 -2.39 -0.02 1.65 16 16 C -0.15 -3.32 6.76 31.61 0.21 -3.11 16 17 C 0.04 1.03 7.63 72.49 0.55 1.58 16 18 O -0.40 -12.39 11.65 -148.98 -1.74 -14.13 16 19 C 0.05 1.73 7.35 72.49 0.53 2.27 16 20 H 0.05 1.69 8.13 -2.38 -0.02 1.67 16 21 H 0.06 1.69 7.50 -2.39 -0.02 1.67 16 22 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 23 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 24 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 25 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 26 H 0.34 10.93 7.81 -89.69 -0.70 10.23 16 27 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.09 1.90 7.55 -2.39 -0.02 1.88 16 29 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.05 1.96 8.06 -2.39 -0.02 1.94 16 32 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -65.06 264.16 1.32 -63.74 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.38 Total: 10.44 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 3.04 Total: -23.93 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -2.39 Total: -84.03 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -1.74 Total: -14.13 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -65.06 1.32 -63.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814557.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.844 kcal (2) G-P(sol) polarization free energy of solvation -65.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds