Wall clock time and date at job start Mon Mar 30 2020 02:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 C 1.52998 * 109.47393 * 120.00318 * 2 1 3 5 5 C 1.50701 * 109.47311 * 185.00064 * 4 2 1 6 6 H 1.08006 * 120.00089 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00357 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99803 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00374 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47071 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47080 * 120.00126 * 9 7 5 12 12 H 1.48500 * 109.47650 * 240.00524 * 9 7 5 13 13 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 14 14 C 1.46902 * 110.99573 * 84.99799 * 13 2 1 15 15 H 1.08993 * 110.44020 * 323.90916 * 14 13 2 16 16 C 1.54818 * 110.48412 * 201.21930 * 14 13 2 17 17 C 1.55001 * 102.09032 * 220.44461 * 16 14 13 18 18 O 1.44383 * 103.49063 * 37.02419 * 17 16 14 19 19 C 1.43740 * 106.97759 * 319.93979 * 18 17 16 20 20 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 21 21 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 23 23 H 1.08998 * 109.47340 * 305.00186 * 4 2 1 24 24 H 1.08998 * 109.47465 * 65.00449 * 4 2 1 25 25 H 0.97002 * 119.99525 * 179.97438 * 8 7 5 26 26 H 1.00896 * 111.00309 * 321.04211 * 13 2 1 27 27 H 1.09000 * 110.90578 * 338.64035 * 16 14 13 28 28 H 1.08999 * 110.90636 * 102.24620 * 16 14 13 29 29 H 1.08996 * 110.61541 * 278.52498 * 17 16 14 30 30 H 1.09001 * 110.61461 * 155.52845 * 17 16 14 31 31 H 1.09004 * 109.87471 * 267.09301 * 19 18 17 32 32 H 1.08995 * 109.88211 * 145.93672 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3126 6 1 4.0791 -0.0861 0.5391 7 6 4.2305 -1.1927 2.3582 8 7 3.5765 -1.8371 3.2999 9 14 6.0922 -1.0614 2.4365 10 1 6.5838 -0.2919 1.2654 11 1 6.4871 -0.3650 3.6871 12 1 6.6856 -2.4226 2.4193 13 7 2.0197 -0.6925 -1.1995 14 6 2.0824 0.2227 -2.3469 15 1 1.2524 0.9286 -2.3166 16 6 2.0730 -0.5724 -3.6753 17 6 3.1083 0.2059 -4.5268 18 8 4.1170 0.5860 -3.5661 19 6 3.4283 0.9731 -2.3653 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8901 23 1 1.6054 -0.2619 2.1369 24 1 1.7518 -1.7716 1.2055 25 1 4.0610 -2.2438 4.0352 26 1 1.4496 -1.4979 -1.4101 27 1 2.3958 -1.6011 -3.5151 28 1 1.0871 -0.5432 -4.1391 29 1 2.6516 1.0890 -4.9735 30 1 3.5342 -0.4381 -5.2962 31 1 3.2527 2.0489 -2.3693 32 1 4.0195 0.6952 -1.4929 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695814561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:36 Heat of formation + Delta-G solvation = -77.877863 kcal Electronic energy + Delta-G solvation = -13180.136928 eV Core-core repulsion = 10946.265922 eV Total energy + Delta-G solvation = -2233.871006 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.41782 -37.78276 -34.85470 -33.05848 -30.58843 -29.27650 -28.25575 -25.09065 -23.63344 -21.71817 -21.15172 -18.44936 -17.61376 -17.12684 -16.51181 -16.15137 -15.76282 -15.15800 -14.54510 -14.23367 -13.78505 -13.64109 -13.35411 -13.22214 -12.75075 -12.54601 -12.37272 -12.30680 -12.00377 -11.91969 -11.74582 -11.11759 -11.08454 -10.57450 -10.48974 -9.04908 -8.10122 -6.14060 1.39402 1.41144 1.54083 2.46958 3.06918 3.21910 3.35235 3.63707 4.04839 4.19773 4.28843 4.33717 4.41781 4.49732 4.61423 4.73221 4.85408 4.88391 4.93930 5.07351 5.13861 5.24116 5.29810 5.52607 5.70637 5.90198 5.99082 6.34705 6.48879 6.72500 7.00508 7.51534 9.02173 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.032375 B = 0.010802 C = 0.008581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.669874 B = 2591.391218 C = 3262.260785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 H 0.058 0.942 4 C 0.037 3.963 5 C -0.495 4.495 6 H 0.055 0.945 7 C -0.007 4.007 8 N -0.940 5.940 9 Si 0.953 3.047 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.674 5.674 14 C 0.057 3.943 15 H 0.067 0.933 16 C -0.148 4.148 17 C 0.044 3.956 18 O -0.406 6.406 19 C 0.051 3.949 20 H 0.067 0.933 21 H 0.054 0.946 22 H 0.055 0.945 23 H -0.007 1.007 24 H -0.009 1.009 25 H 0.258 0.742 26 H 0.341 0.659 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.402 4.467 -14.107 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.012 4.012 3 H 0.076 0.924 4 C -0.001 4.001 5 C -0.534 4.534 6 H 0.074 0.926 7 C -0.203 4.203 8 N -0.583 5.583 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.306 5.306 14 C -0.054 4.054 15 H 0.085 0.915 16 C -0.186 4.186 17 C -0.032 4.032 18 O -0.326 6.326 19 C -0.026 4.026 20 H 0.086 0.914 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.011 0.989 24 H 0.010 0.990 25 H 0.067 0.933 26 H 0.161 0.839 27 H 0.094 0.906 28 H 0.125 0.875 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.082 0.918 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.478 4.466 -13.832 15.209 hybrid contribution -0.122 -0.100 0.544 0.567 sum -4.600 4.366 -13.287 14.723 Atomic orbital electron populations 1.22405 0.96438 1.01893 1.02035 1.21508 0.92253 0.96786 0.90670 0.92376 1.19002 0.95019 0.94265 0.91785 1.21532 0.93471 1.32067 1.06294 0.92636 1.25834 1.02672 0.95833 0.95912 1.70097 1.36871 1.38187 1.13112 0.85573 0.81002 0.77664 0.77839 1.19290 1.20627 1.20938 1.60446 1.58394 1.09144 1.02642 1.22912 0.96374 0.94984 0.91083 0.91478 1.23298 1.01433 1.00082 0.93813 1.23714 0.88666 0.98816 0.92051 1.88841 1.32239 1.87197 1.24307 1.23294 0.93874 0.97735 0.87738 0.91425 0.92732 0.92547 0.98900 0.99045 0.93309 0.83932 0.90552 0.87546 0.90436 0.87669 0.91791 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.24 9.15 71.98 0.66 -4.58 16 2 C 0.10 3.84 2.39 44.91 0.11 3.94 16 3 H 0.06 2.34 7.74 -2.39 -0.02 2.32 16 4 C 0.04 1.92 4.65 29.85 0.14 2.06 16 5 C -0.50 -28.58 8.84 25.60 0.23 -28.35 16 6 H 0.06 3.19 6.91 -2.91 -0.02 3.17 16 7 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 8 N -0.94 -58.61 13.29 21.45 0.28 -58.33 16 9 Si 0.95 46.79 29.54 68.60 2.03 48.81 16 10 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 13 N -0.67 -24.27 5.64 -464.39 -2.62 -26.89 16 14 C 0.06 1.64 3.14 45.91 0.14 1.78 16 15 H 0.07 1.70 7.20 -2.39 -0.02 1.69 16 16 C -0.15 -3.33 6.63 31.90 0.21 -3.12 16 17 C 0.04 0.98 7.72 72.67 0.56 1.54 16 18 O -0.41 -13.38 11.52 -148.98 -1.72 -15.10 16 19 C 0.05 1.70 7.32 72.36 0.53 2.23 16 20 H 0.07 1.70 7.45 -2.39 -0.02 1.68 16 21 H 0.05 1.66 8.13 -2.38 -0.02 1.64 16 22 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 23 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 24 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 25 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 26 H 0.34 11.24 8.17 -89.70 -0.73 10.51 16 27 H 0.08 1.90 8.01 -2.39 -0.02 1.88 16 28 H 0.11 1.70 8.14 -2.39 -0.02 1.69 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.06 2.70 7.09 -2.39 -0.02 2.68 16 Total: -1.00 -67.43 262.61 1.37 -66.06 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.35 Total: 9.88 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: 3.04 Total: -24.44 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -2.34 Total: -85.21 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -1.72 Total: -15.10 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -67.43 1.37 -66.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.817 kcal (2) G-P(sol) polarization free energy of solvation -67.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds