Wall clock time and date at job start Mon Mar 30 2020 02:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47193 * 2 1 4 4 C 1.53001 * 109.47197 * 239.99875 * 2 1 3 5 5 C 1.50694 * 109.47168 * 175.00067 * 4 2 1 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 N 1.46900 * 109.47354 * 120.00022 * 2 1 3 14 14 C 1.46903 * 111.00037 * 275.00123 * 13 2 1 15 15 H 1.08998 * 110.43357 * 323.90787 * 14 13 2 16 16 C 1.54809 * 110.48764 * 201.21834 * 14 13 2 17 17 C 1.54994 * 102.08936 * 220.44217 * 16 14 13 18 18 O 1.44373 * 103.49351 * 37.02406 * 17 16 14 19 19 C 1.43744 * 106.97674 * 319.94025 * 18 17 16 20 20 H 1.09005 * 109.47168 * 300.00070 * 1 2 3 21 21 H 1.08999 * 109.47050 * 59.99651 * 1 2 3 22 22 H 1.09000 * 109.47193 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46922 * 54.99769 * 4 2 1 24 24 H 1.09003 * 109.46836 * 295.00525 * 4 2 1 25 25 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 26 26 H 1.00895 * 111.00450 * 151.04612 * 13 2 1 27 27 H 1.08998 * 110.90630 * 338.64053 * 16 14 13 28 28 H 1.08995 * 110.90496 * 102.24378 * 16 14 13 29 29 H 1.09001 * 110.62083 * 278.51741 * 17 16 14 30 30 H 1.08999 * 110.74896 * 155.59171 * 17 16 14 31 31 H 1.09004 * 109.87491 * 267.09206 * 19 18 17 32 32 H 1.08992 * 110.00824 * 146.00975 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3127 6 1 4.0790 -0.0862 -0.5392 7 6 4.2303 -1.1927 -2.3583 8 7 3.5763 -1.8370 -3.3000 9 14 6.0919 -1.0603 -2.4374 10 1 6.5870 -1.7605 -3.6498 11 1 6.4843 0.3706 -2.4966 12 1 6.6845 -1.6864 -1.2282 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 1 2.3827 1.2191 2.0230 16 6 3.0592 -0.3190 3.4190 17 6 2.3051 -0.0009 4.7353 18 8 0.9216 -0.2359 4.3963 19 6 0.7219 0.2770 3.0684 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6053 -0.2618 -2.1370 24 1 1.7515 -1.7715 -1.2055 25 1 4.0606 -2.2432 -4.0358 26 1 2.9173 -1.1205 1.0288 27 1 3.2058 -1.3930 3.3045 28 1 4.0120 0.2088 3.3792 29 1 2.4584 1.0390 5.0238 30 1 2.6237 -0.6704 5.5343 31 1 0.3698 1.3074 3.1182 32 1 -0.0045 -0.3373 2.5366 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695814566.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:39 Heat of formation + Delta-G solvation = -59.526468 kcal Electronic energy + Delta-G solvation = -13120.729835 eV Core-core repulsion = 10887.654605 eV Total energy + Delta-G solvation = -2233.075230 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.24810 -36.20711 -32.93368 -31.60464 -29.29990 -27.72279 -26.93693 -23.03402 -22.45168 -20.43497 -19.45690 -16.49804 -16.27658 -15.97162 -14.95639 -14.78111 -14.40659 -13.75296 -13.14913 -12.75220 -12.20255 -11.80820 -11.77264 -11.39213 -11.33511 -11.13866 -10.87215 -10.72486 -10.54581 -10.46080 -10.18386 -9.48996 -9.25205 -9.09597 -8.42536 -7.76070 -6.05662 -4.09323 3.28022 3.33559 3.34746 4.14632 4.40005 4.69761 4.78461 5.12420 5.26627 5.31389 5.44897 5.66626 5.77225 5.85546 5.90703 5.99852 6.16392 6.17606 6.19639 6.31856 6.54267 6.89904 6.91220 7.04843 7.49420 7.59934 7.93379 8.01542 8.21035 8.33491 8.96582 9.54893 11.05147 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042653 B = 0.009031 C = 0.007709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.303353 B = 3099.776999 C = 3631.241453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.085 3.915 3 H 0.030 0.970 4 C 0.020 3.980 5 C -0.526 4.526 6 H 0.050 0.950 7 C 0.061 3.939 8 N -0.890 5.890 9 Si 0.891 3.109 10 H -0.287 1.287 11 H -0.278 1.278 12 H -0.277 1.277 13 N -0.672 5.672 14 C 0.054 3.946 15 H 0.051 0.949 16 C -0.158 4.158 17 C 0.049 3.951 18 O -0.381 6.381 19 C 0.052 3.948 20 H 0.040 0.960 21 H 0.049 0.951 22 H 0.056 0.944 23 H 0.022 0.978 24 H 0.026 0.974 25 H 0.262 0.738 26 H 0.358 0.642 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 4.159 11.123 12.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 H 0.048 0.952 4 C -0.017 4.017 5 C -0.565 4.565 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.529 5.529 9 Si 0.718 3.282 10 H -0.212 1.212 11 H -0.204 1.204 12 H -0.202 1.202 13 N -0.307 5.307 14 C -0.057 4.057 15 H 0.069 0.931 16 C -0.196 4.196 17 C -0.028 4.028 18 O -0.300 6.300 19 C -0.025 4.025 20 H 0.059 0.941 21 H 0.068 0.932 22 H 0.075 0.925 23 H 0.040 0.960 24 H 0.045 0.955 25 H 0.072 0.928 26 H 0.181 0.819 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.752 3.703 11.234 12.145 hybrid contribution 2.050 0.766 -0.587 2.266 sum -0.702 4.469 10.648 11.569 Atomic orbital electron populations 1.21929 0.96722 1.01492 0.99703 1.21717 0.93459 0.95805 0.91435 0.95209 1.19282 0.95388 0.96246 0.90788 1.21125 0.92219 1.34729 1.08383 0.93133 1.24996 0.98274 0.95142 0.95686 1.69950 1.35640 1.35409 1.11878 0.86687 0.85835 0.78140 0.77501 1.21222 1.20381 1.20210 1.60655 1.34813 1.31249 1.04006 1.22927 0.94228 0.95708 0.92857 0.93081 1.23313 0.98608 1.03141 0.94508 1.23437 0.82078 1.00122 0.97154 1.88841 1.26955 1.82180 1.32051 1.23467 0.98267 0.98202 0.82541 0.94140 0.93244 0.92499 0.95999 0.95528 0.92837 0.81931 0.89450 0.90515 0.92724 0.89327 0.93369 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.79 37.16 0.33 -2.18 16 2 C 0.09 1.75 2.59 -67.71 -0.18 1.58 16 3 H 0.03 0.63 7.47 -51.93 -0.39 0.24 16 4 C 0.02 0.51 4.57 -27.89 -0.13 0.39 16 5 C -0.53 -14.31 8.12 -34.44 -0.28 -14.59 16 6 H 0.05 1.33 7.49 -52.49 -0.39 0.93 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 N -0.67 -12.85 6.05 -98.14 -0.59 -13.44 16 14 C 0.05 0.87 3.35 -66.18 -0.22 0.64 16 15 H 0.05 0.83 7.51 -51.93 -0.39 0.44 16 16 C -0.16 -2.18 6.63 -24.72 -0.16 -2.34 16 17 C 0.05 0.62 7.72 38.21 0.29 0.91 16 18 O -0.38 -5.99 11.52 -35.23 -0.41 -6.40 16 19 C 0.05 0.80 6.30 37.73 0.24 1.04 16 20 H 0.04 0.63 5.86 -51.93 -0.30 0.33 16 21 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.36 7.40 6.90 -39.29 -0.27 7.13 16 27 H 0.09 1.27 8.01 -51.93 -0.42 0.85 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 1.60 6.25 -51.93 -0.32 1.27 16 LS Contribution 258.18 15.07 3.89 3.89 Total: -1.00 -29.07 258.18 -6.60 -35.67 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.00 Total: 2.60 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.21 Total: -12.94 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.14 Total: -39.03 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.41 Total: -6.40 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.07 -6.60 -35.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695814566.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.852 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds