Wall clock time and date at job start Mon Mar 30 2020 02:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.50703 * 109.46801 * 184.99876 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47144 * 90.00302 * 9 7 5 11 11 H 1.48507 * 109.46867 * 209.99975 * 9 7 5 12 12 H 1.48496 * 109.47175 * 330.00050 * 9 7 5 13 13 O 1.42896 * 109.46906 * 240.00282 * 2 1 3 14 14 C 1.42896 * 114.00446 * 89.99887 * 13 2 1 15 15 H 1.09001 * 110.64412 * 333.15413 * 14 13 2 16 16 C 1.54593 * 110.72777 * 210.00048 * 14 13 2 17 17 C 1.53998 * 105.13775 * 219.68476 * 16 14 13 18 18 N 1.47897 * 107.06096 * 358.77283 * 17 16 14 19 19 C 1.48535 * 105.81945 * 25.33165 * 18 17 16 20 20 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 23 23 H 1.09002 * 109.47069 * 304.99600 * 4 2 1 24 24 H 1.08991 * 109.47625 * 64.99919 * 4 2 1 25 25 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 26 26 H 1.08998 * 110.30971 * 338.59476 * 16 14 13 27 27 H 1.09002 * 110.31060 * 100.66644 * 16 14 13 28 28 H 1.08997 * 109.91673 * 118.12963 * 17 16 14 29 29 H 1.09005 * 109.91286 * 239.41946 * 17 16 14 30 30 H 1.00898 * 111.00003 * 264.82186 * 18 17 16 31 31 H 1.09006 * 110.66807 * 202.35976 * 19 18 17 32 32 H 1.08997 * 110.66625 * 79.22578 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0789 -0.0855 0.5396 7 6 4.2303 -1.1928 2.3582 8 7 3.5763 -1.8362 3.3004 9 14 6.0920 -1.0603 2.4372 10 1 6.4697 0.1624 3.1906 11 1 6.6445 -2.2554 3.1241 12 1 6.6416 -0.9827 1.0599 13 8 2.0062 -0.6736 -1.1668 14 6 2.2000 0.1829 -2.2941 15 1 1.5407 1.0490 -2.2365 16 6 1.9738 -0.5899 -3.6137 17 6 3.0637 -0.0760 -4.5726 18 7 3.8370 0.9503 -3.8405 19 6 3.6818 0.6232 -2.3999 20 1 -0.3635 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 1.6054 -0.2618 2.1370 24 1 1.7516 -1.7715 1.2056 25 1 4.0607 -2.2430 4.0358 26 1 2.0892 -1.6612 -3.4493 27 1 0.9832 -0.3738 -4.0138 28 1 3.7189 -0.8968 -4.8642 29 1 2.6027 0.3663 -5.4558 30 1 3.4892 1.8761 -4.0405 31 1 3.8667 1.5030 -1.7835 32 1 4.3466 -0.1929 -2.1170 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695862083.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:54 Heat of formation + Delta-G solvation = -58.223633 kcal Electronic energy + Delta-G solvation = -13174.580668 eV Core-core repulsion = 10941.561933 eV Total energy + Delta-G solvation = -2233.018735 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.82584 -36.45477 -33.08011 -31.22228 -29.21584 -27.66092 -27.36297 -23.17437 -21.60758 -20.39054 -20.14260 -16.61362 -16.38219 -16.12636 -14.80524 -14.31306 -13.68139 -13.52703 -13.39682 -12.74029 -12.29430 -11.99565 -11.78902 -11.50308 -11.31421 -11.20937 -10.90307 -10.66042 -10.58741 -10.44393 -10.02636 -9.45189 -9.16299 -8.86101 -8.32286 -8.25811 -5.94578 -3.94814 3.36144 3.42529 3.47471 4.16015 4.51546 4.59879 4.93464 5.07679 5.23385 5.42105 5.45324 5.65466 5.74904 5.77065 5.95212 6.00600 6.08023 6.10698 6.21123 6.37073 6.48326 6.72365 6.80142 6.92772 7.43298 7.55529 7.68426 8.03024 8.19061 8.47115 9.09185 9.67607 11.17178 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.032866 B = 0.010701 C = 0.008547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.729913 B = 2616.022767 C = 3275.091287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 H 0.046 0.954 4 C 0.024 3.976 5 C -0.506 4.506 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 O -0.353 6.353 14 C 0.056 3.944 15 H 0.056 0.944 16 C -0.153 4.153 17 C 0.045 3.955 18 N -0.674 5.674 19 C 0.024 3.976 20 H 0.038 0.962 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.029 0.971 24 H 0.025 0.975 25 H 0.259 0.741 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.332 0.668 31 H 0.075 0.925 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 5.039 -11.681 13.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.033 3.967 3 H 0.064 0.936 4 C -0.013 4.013 5 C -0.544 4.544 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.197 1.197 13 O -0.271 6.271 14 C -0.004 4.004 15 H 0.074 0.926 16 C -0.192 4.192 17 C -0.085 4.085 18 N -0.302 5.302 19 C -0.106 4.106 20 H 0.057 0.943 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.047 0.953 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.093 0.907 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.946 4.440 -11.619 12.782 hybrid contribution -0.072 0.537 0.369 0.655 sum -3.018 4.976 -11.250 12.666 Atomic orbital electron populations 1.22351 0.98256 1.01914 1.00421 1.22451 0.90881 0.96066 0.87304 0.93626 1.19240 0.96386 0.96316 0.89353 1.21138 0.91817 1.33910 1.07535 0.92546 1.24994 0.98281 0.95475 0.95828 1.69957 1.35427 1.36357 1.12168 0.86620 0.85985 0.77403 0.78198 1.20819 1.21306 1.19748 1.88058 1.86183 1.33767 1.19116 1.23580 0.96141 0.92990 0.87718 0.92606 1.22825 0.99020 1.02498 0.94891 1.22673 0.93795 0.95949 0.96069 1.62762 1.55505 1.05268 1.06619 1.23639 0.96638 1.02271 0.88030 0.94302 0.92336 0.92152 0.95253 0.95659 0.93098 0.89878 0.91564 0.90503 0.91863 0.85378 0.90662 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 9.53 37.16 0.35 -2.69 16 2 C 0.09 1.92 2.50 -26.73 -0.07 1.85 16 3 H 0.05 0.94 7.78 -51.93 -0.40 0.54 16 4 C 0.02 0.63 4.68 -27.88 -0.13 0.50 16 5 C -0.51 -14.43 8.88 -34.44 -0.31 -14.73 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 9 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 O -0.35 -7.46 9.48 -35.23 -0.33 -7.80 16 14 C 0.06 0.94 3.35 -24.87 -0.08 0.86 16 15 H 0.06 0.86 7.77 -51.93 -0.40 0.46 16 16 C -0.15 -2.15 6.69 -25.37 -0.17 -2.32 16 17 C 0.04 0.56 7.51 -2.75 -0.02 0.54 16 18 N -0.67 -9.34 7.51 -110.08 -0.83 -10.17 16 19 C 0.02 0.40 7.27 -1.89 -0.01 0.38 16 20 H 0.04 0.60 8.11 -51.93 -0.42 0.17 16 21 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.33 3.85 8.92 -39.29 -0.35 3.50 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 267.01 15.07 4.02 4.02 Total: -1.00 -30.67 267.01 -7.30 -37.97 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.34 Total: -0.40 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -0.53 Total: -14.12 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: -0.09 Total: -36.78 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -0.33 Total: -7.80 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.67 -7.30 -37.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695862083.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.255 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds