Wall clock time and date at job start Mon Mar 30 2020 02:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.50703 * 109.46801 * 184.99876 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47144 * 90.00302 * 9 7 5 11 11 H 1.48507 * 109.46867 * 209.99975 * 9 7 5 12 12 H 1.48496 * 109.47175 * 330.00050 * 9 7 5 13 13 O 1.42896 * 109.46906 * 240.00282 * 2 1 3 14 14 C 1.42896 * 114.00446 * 89.99887 * 13 2 1 15 15 H 1.09001 * 110.64412 * 333.15413 * 14 13 2 16 16 C 1.54593 * 110.72777 * 210.00048 * 14 13 2 17 17 C 1.53998 * 105.13775 * 219.68476 * 16 14 13 18 18 N 1.47897 * 107.06096 * 358.77283 * 17 16 14 19 19 C 1.48535 * 105.81945 * 25.33165 * 18 17 16 20 20 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 23 23 H 1.09002 * 109.47069 * 304.99600 * 4 2 1 24 24 H 1.08991 * 109.47625 * 64.99919 * 4 2 1 25 25 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 26 26 H 1.08998 * 110.30971 * 338.59476 * 16 14 13 27 27 H 1.09002 * 110.31060 * 100.66644 * 16 14 13 28 28 H 1.08997 * 109.91673 * 118.12963 * 17 16 14 29 29 H 1.09005 * 109.91286 * 239.41946 * 17 16 14 30 30 H 1.00898 * 111.00003 * 264.82186 * 18 17 16 31 31 H 1.09006 * 110.66807 * 202.35976 * 19 18 17 32 32 H 1.08997 * 110.66625 * 79.22578 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0789 -0.0855 0.5396 7 6 4.2303 -1.1928 2.3582 8 7 3.5763 -1.8362 3.3004 9 14 6.0920 -1.0603 2.4372 10 1 6.4697 0.1624 3.1906 11 1 6.6445 -2.2554 3.1241 12 1 6.6416 -0.9827 1.0599 13 8 2.0062 -0.6736 -1.1668 14 6 2.2000 0.1829 -2.2941 15 1 1.5407 1.0490 -2.2365 16 6 1.9738 -0.5899 -3.6137 17 6 3.0637 -0.0760 -4.5726 18 7 3.8370 0.9503 -3.8405 19 6 3.6818 0.6232 -2.3999 20 1 -0.3635 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 1.6054 -0.2618 2.1370 24 1 1.7516 -1.7715 1.2056 25 1 4.0607 -2.2430 4.0358 26 1 2.0892 -1.6612 -3.4493 27 1 0.9832 -0.3738 -4.0138 28 1 3.7189 -0.8968 -4.8642 29 1 2.6027 0.3663 -5.4558 30 1 3.4892 1.8761 -4.0405 31 1 3.8667 1.5030 -1.7835 32 1 4.3466 -0.1929 -2.1170 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695862083.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:54 Heat of formation + Delta-G solvation = -80.167395 kcal Electronic energy + Delta-G solvation = -13175.532221 eV Core-core repulsion = 10941.561933 eV Total energy + Delta-G solvation = -2233.970288 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.16947 -37.90187 -35.15284 -32.99494 -30.37172 -29.31867 -28.91137 -25.19080 -22.85442 -21.85394 -21.60745 -18.49948 -17.95345 -17.53946 -16.64299 -15.90717 -15.21489 -14.88061 -14.66628 -14.22623 -14.05297 -13.51253 -13.36206 -13.27947 -12.90286 -12.64468 -12.60193 -12.38755 -12.15486 -12.00887 -11.50645 -11.27600 -11.16402 -10.56776 -10.41594 -9.50737 -8.18005 -6.25850 1.38305 1.40058 1.51287 2.41719 2.79576 3.16618 3.41461 3.75015 3.97414 4.05844 4.18712 4.26739 4.41504 4.43939 4.53624 4.66292 4.81942 4.91712 5.04050 5.09980 5.13233 5.20314 5.23644 5.43226 5.53569 5.67741 5.81423 6.24837 6.46494 6.63692 6.87179 7.41065 8.94230 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.032866 B = 0.010701 C = 0.008547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.729913 B = 2616.022767 C = 3275.091287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 H 0.051 0.949 4 C 0.026 3.974 5 C -0.521 4.521 6 H 0.057 0.943 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.958 3.042 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.268 1.268 13 O -0.382 6.382 14 C 0.048 3.952 15 H 0.076 0.924 16 C -0.148 4.148 17 C 0.048 3.952 18 N -0.675 5.675 19 C 0.026 3.974 20 H 0.069 0.931 21 H 0.050 0.950 22 H 0.068 0.932 23 H 0.012 0.988 24 H -0.009 1.009 25 H 0.262 0.738 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.348 0.652 31 H 0.074 0.926 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.631 6.297 -13.386 15.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.069 0.931 4 C -0.011 4.011 5 C -0.559 4.559 6 H 0.076 0.924 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.783 3.217 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.192 1.192 13 O -0.301 6.301 14 C -0.012 4.012 15 H 0.094 0.906 16 C -0.187 4.187 17 C -0.082 4.082 18 N -0.304 5.304 19 C -0.104 4.104 20 H 0.088 0.912 21 H 0.069 0.931 22 H 0.087 0.913 23 H 0.030 0.970 24 H 0.009 0.991 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.165 0.835 31 H 0.092 0.908 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.896 5.717 -13.344 14.803 hybrid contribution -0.100 0.142 0.857 0.874 sum -2.995 5.859 -12.487 14.115 Atomic orbital electron populations 1.22236 0.95306 1.02076 1.02384 1.22177 0.93098 0.95102 0.85617 0.93068 1.19125 0.95582 0.94715 0.91715 1.21509 0.93210 1.33692 1.07473 0.92445 1.25897 1.03390 0.95113 0.95487 1.70083 1.37432 1.37295 1.12862 0.85544 0.79887 0.77824 0.78417 1.19487 1.20872 1.19225 1.88005 1.86569 1.35426 1.20071 1.23884 0.96419 0.93619 0.87250 0.90588 1.22831 1.01019 1.01052 0.93779 1.22731 0.93183 0.95681 0.96581 1.62666 1.56314 1.06647 1.04757 1.23442 0.96087 1.00949 0.89948 0.91201 0.93106 0.91263 0.96956 0.99082 0.92905 0.91716 0.89003 0.91015 0.88397 0.83523 0.90793 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.51 9.53 71.98 0.69 -4.83 16 2 C 0.10 4.11 2.50 30.59 0.08 4.19 16 3 H 0.05 2.07 7.78 -2.39 -0.02 2.06 16 4 C 0.03 1.39 4.68 29.85 0.14 1.53 16 5 C -0.52 -30.30 8.88 25.60 0.23 -30.08 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 7 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 8 N -0.94 -58.14 13.29 21.45 0.28 -57.86 16 9 Si 0.96 45.80 29.54 68.60 2.03 47.82 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 O -0.38 -16.07 9.48 -148.98 -1.41 -17.48 16 14 C 0.05 1.53 3.35 31.80 0.11 1.63 16 15 H 0.08 2.10 7.77 -2.39 -0.02 2.09 16 16 C -0.15 -3.80 6.69 31.47 0.21 -3.59 16 17 C 0.05 1.05 7.51 86.45 0.65 1.70 16 18 N -0.67 -17.13 7.51 -502.18 -3.77 -20.90 16 19 C 0.03 0.84 7.27 86.65 0.63 1.47 16 20 H 0.07 1.93 8.11 -2.39 -0.02 1.91 16 21 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 23 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 24 H -0.01 -0.56 8.14 -2.39 -0.02 -0.57 16 25 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 26 H 0.06 1.90 8.07 -2.39 -0.02 1.88 16 27 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.35 6.98 8.92 -89.70 -0.80 6.18 16 31 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -66.88 267.01 0.59 -66.29 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.28 Total: 9.75 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 3.19 Total: -27.62 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -3.49 Total: -78.76 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -1.41 Total: -17.48 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -66.88 0.59 -66.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695862083.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.878 kcal (2) G-P(sol) polarization free energy of solvation -66.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds