Wall clock time and date at job start Mon Mar 30 2020 02:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47230 * 2 1 4 4 C 1.53003 * 109.46954 * 119.99976 * 2 1 3 5 5 C 1.50703 * 109.47038 * 184.99942 * 4 2 1 6 6 H 1.08006 * 120.00159 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00120 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00089 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99938 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 269.99556 * 9 7 5 11 11 H 1.48503 * 109.47261 * 149.99737 * 9 7 5 12 12 H 1.48500 * 109.47454 * 29.99730 * 9 7 5 13 13 O 1.42901 * 109.47255 * 240.00081 * 2 1 3 14 14 C 1.42899 * 114.00120 * 90.00031 * 13 2 1 15 15 H 1.09001 * 110.62947 * 31.65269 * 14 13 2 16 16 C 1.55130 * 110.70637 * 154.95015 * 14 13 2 17 17 C 1.54909 * 101.65326 * 154.03580 * 16 14 13 18 18 N 1.47839 * 104.79450 * 322.93034 * 17 16 14 19 19 C 1.47437 * 108.57014 * 24.09251 * 18 17 16 20 20 H 1.09001 * 109.46920 * 299.99826 * 1 2 3 21 21 H 1.08996 * 109.47221 * 60.00040 * 1 2 3 22 22 H 1.08997 * 109.47230 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46825 * 65.00266 * 4 2 1 24 24 H 1.08996 * 109.47396 * 304.99839 * 4 2 1 25 25 H 0.96998 * 119.99255 * 0.02562 * 8 7 5 26 26 H 1.08998 * 110.99496 * 272.12695 * 16 14 13 27 27 H 1.09001 * 110.99393 * 35.94516 * 16 14 13 28 28 H 1.09004 * 110.37290 * 204.09847 * 17 16 14 29 29 H 1.08996 * 110.46808 * 81.80859 * 17 16 14 30 30 H 1.00904 * 110.99710 * 261.82665 * 18 17 16 31 31 H 1.08997 * 109.89348 * 239.60335 * 19 18 17 32 32 H 1.09006 * 110.02111 * 118.48996 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2304 -1.1936 2.3578 8 7 3.5764 -1.8378 3.2995 9 14 6.0920 -1.0611 2.4368 10 1 6.7010 -2.2131 1.7245 11 1 6.5291 -1.0696 3.8561 12 1 6.5261 0.2046 1.7928 13 8 2.0063 -0.6736 -1.1668 14 6 2.2001 0.1829 -2.2941 15 1 2.4924 1.1822 -1.9714 16 6 3.2541 -0.4151 -3.2626 17 6 2.8324 0.2167 -4.6127 18 7 1.3549 0.2450 -4.5711 19 6 0.9247 0.2408 -3.1609 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.7516 -1.7716 1.2056 24 1 1.6054 -0.2618 2.1370 25 1 2.6097 -1.9062 3.2586 26 1 4.2611 -0.1047 -2.9839 27 1 3.1784 -1.5018 -3.2995 28 1 3.1770 -0.3988 -5.4437 29 1 3.2291 1.2281 -4.7006 30 1 0.9640 -0.5397 -5.0707 31 1 0.3034 -0.6331 -2.9653 32 1 0.3661 1.1501 -2.9384 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695862087.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:55 Heat of formation + Delta-G solvation = -62.527845 kcal Electronic energy + Delta-G solvation = -13144.273641 eV Core-core repulsion = 10911.068262 eV Total energy + Delta-G solvation = -2233.205380 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.91680 -36.52915 -33.40598 -31.23656 -29.26539 -28.01922 -26.89785 -22.99266 -21.52451 -20.66521 -20.38819 -16.93326 -16.81118 -15.67073 -15.33125 -13.94339 -13.72283 -13.65417 -13.25683 -12.89712 -12.58669 -12.19620 -11.90882 -11.59026 -11.37049 -11.27434 -11.05706 -10.73154 -10.53545 -10.23944 -10.08755 -9.59912 -9.13490 -8.51718 -8.32945 -8.28914 -6.31164 -3.98133 3.45780 3.49400 3.65003 4.05765 4.47749 4.58315 4.85365 4.95346 5.31567 5.34369 5.46773 5.62061 5.63714 5.70242 5.85624 5.91461 6.01159 6.02127 6.18883 6.22414 6.31611 6.61963 6.74029 6.81777 7.25272 7.32395 7.39425 8.06397 8.26737 8.51778 8.93362 9.71787 11.09722 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.039908 B = 0.009452 C = 0.007883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.449753 B = 2961.575716 C = 3550.876683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 H 0.049 0.951 4 C 0.010 3.990 5 C -0.587 4.587 6 H 0.048 0.952 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 1.071 2.929 10 H -0.288 1.288 11 H -0.285 1.285 12 H -0.290 1.290 13 O -0.355 6.355 14 C 0.070 3.930 15 H 0.067 0.933 16 C -0.150 4.150 17 C 0.047 3.953 18 N -0.685 5.685 19 C 0.023 3.977 20 H 0.059 0.941 21 H 0.045 0.955 22 H 0.056 0.944 23 H 0.016 0.984 24 H 0.020 0.980 25 H 0.268 0.732 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.337 0.663 31 H 0.062 0.938 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 4.007 -12.471 13.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.040 3.960 3 H 0.067 0.933 4 C -0.027 4.027 5 C -0.626 4.626 6 H 0.066 0.934 7 C -0.191 4.191 8 N -0.554 5.554 9 Si 0.900 3.100 10 H -0.215 1.215 11 H -0.211 1.211 12 H -0.216 1.216 13 O -0.273 6.273 14 C 0.010 3.990 15 H 0.085 0.915 16 C -0.188 4.188 17 C -0.082 4.082 18 N -0.314 5.314 19 C -0.107 4.107 20 H 0.078 0.922 21 H 0.064 0.936 22 H 0.075 0.925 23 H 0.034 0.966 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.152 0.848 31 H 0.081 0.919 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.027 4.098 -11.657 12.521 hybrid contribution -1.290 -0.239 -0.640 1.459 sum -3.316 3.858 -12.297 13.308 Atomic orbital electron populations 1.22421 0.98048 1.01860 1.00855 1.22292 0.90954 0.95914 0.86814 0.93336 1.19369 0.97415 0.95679 0.90271 1.21965 0.91588 1.38214 1.10809 0.93356 1.25818 1.06865 0.93656 0.92772 1.70757 1.10257 1.40205 1.34191 0.83516 0.74458 0.76009 0.76034 1.21516 1.21051 1.21584 1.88031 1.86034 1.34015 1.19200 1.23280 0.93548 0.94368 0.87772 0.91527 1.23134 0.99573 1.01534 0.94600 1.22833 0.87960 1.00887 0.96512 1.61727 1.08165 1.48508 1.12951 1.23260 0.98204 1.01718 0.87497 0.92231 0.93605 0.92485 0.96612 0.96172 0.92208 0.90129 0.90425 0.91292 0.90484 0.84798 0.91940 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.37 37.16 0.35 -2.73 16 2 C 0.10 2.11 2.67 -26.73 -0.07 2.04 16 3 H 0.05 1.04 7.42 -51.93 -0.39 0.65 16 4 C 0.01 0.25 4.00 -27.88 -0.11 0.14 16 5 C -0.59 -17.17 8.88 -34.44 -0.31 -17.48 16 6 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 7 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 8 N -0.92 -28.70 13.65 55.43 0.76 -27.94 16 9 Si 1.07 26.04 29.90 -169.99 -5.08 20.96 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 O -0.35 -7.60 9.48 -35.23 -0.33 -7.93 16 14 C 0.07 1.20 3.39 -24.91 -0.08 1.12 16 15 H 0.07 1.15 7.47 -51.93 -0.39 0.76 16 16 C -0.15 -2.24 6.80 -24.60 -0.17 -2.41 16 17 C 0.05 0.57 7.57 -2.30 -0.02 0.55 16 18 N -0.68 -8.74 7.39 -110.79 -0.82 -9.56 16 19 C 0.02 0.33 6.15 -2.84 -0.02 0.31 16 20 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 21 H 0.04 0.70 6.80 -51.93 -0.35 0.35 16 22 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 24 H 0.02 0.54 8.01 -51.93 -0.42 0.13 16 25 H 0.27 8.32 7.22 -40.82 -0.29 8.03 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.34 3.71 8.91 -39.29 -0.35 3.36 16 31 H 0.06 0.92 8.06 -51.93 -0.42 0.50 16 32 H 0.07 1.03 7.88 -51.93 -0.41 0.62 16 LS Contribution 262.39 15.07 3.95 3.95 Total: -1.00 -31.70 262.39 -7.22 -38.92 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.17 Total: -0.19 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -0.52 Total: -18.21 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: -0.06 Total: -37.50 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.33 Total: -7.93 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.08 Total: 20.96 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.70 -7.22 -38.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695862087.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.608 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds