Wall clock time and date at job start Mon Mar 30 2020 02:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47230 * 2 1 4 4 C 1.53003 * 109.46954 * 119.99976 * 2 1 3 5 5 C 1.50703 * 109.47038 * 184.99942 * 4 2 1 6 6 H 1.08006 * 120.00159 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00120 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00089 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99938 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 269.99556 * 9 7 5 11 11 H 1.48503 * 109.47261 * 149.99737 * 9 7 5 12 12 H 1.48500 * 109.47454 * 29.99730 * 9 7 5 13 13 O 1.42901 * 109.47255 * 240.00081 * 2 1 3 14 14 C 1.42899 * 114.00120 * 90.00031 * 13 2 1 15 15 H 1.09001 * 110.62947 * 31.65269 * 14 13 2 16 16 C 1.55130 * 110.70637 * 154.95015 * 14 13 2 17 17 C 1.54909 * 101.65326 * 154.03580 * 16 14 13 18 18 N 1.47839 * 104.79450 * 322.93034 * 17 16 14 19 19 C 1.47437 * 108.57014 * 24.09251 * 18 17 16 20 20 H 1.09001 * 109.46920 * 299.99826 * 1 2 3 21 21 H 1.08996 * 109.47221 * 60.00040 * 1 2 3 22 22 H 1.08997 * 109.47230 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46825 * 65.00266 * 4 2 1 24 24 H 1.08996 * 109.47396 * 304.99839 * 4 2 1 25 25 H 0.96998 * 119.99255 * 0.02562 * 8 7 5 26 26 H 1.08998 * 110.99496 * 272.12695 * 16 14 13 27 27 H 1.09001 * 110.99393 * 35.94516 * 16 14 13 28 28 H 1.09004 * 110.37290 * 204.09847 * 17 16 14 29 29 H 1.08996 * 110.46808 * 81.80859 * 17 16 14 30 30 H 1.00904 * 110.99710 * 261.82665 * 18 17 16 31 31 H 1.08997 * 109.89348 * 239.60335 * 19 18 17 32 32 H 1.09006 * 110.02111 * 118.48996 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2304 -1.1936 2.3578 8 7 3.5764 -1.8378 3.2995 9 14 6.0920 -1.0611 2.4368 10 1 6.7010 -2.2131 1.7245 11 1 6.5291 -1.0696 3.8561 12 1 6.5261 0.2046 1.7928 13 8 2.0063 -0.6736 -1.1668 14 6 2.2001 0.1829 -2.2941 15 1 2.4924 1.1822 -1.9714 16 6 3.2541 -0.4151 -3.2626 17 6 2.8324 0.2167 -4.6127 18 7 1.3549 0.2450 -4.5711 19 6 0.9247 0.2408 -3.1609 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.7516 -1.7716 1.2056 24 1 1.6054 -0.2618 2.1370 25 1 2.6097 -1.9062 3.2586 26 1 4.2611 -0.1047 -2.9839 27 1 3.1784 -1.5018 -3.2995 28 1 3.1770 -0.3988 -5.4437 29 1 3.2291 1.2281 -4.7006 30 1 0.9640 -0.5397 -5.0707 31 1 0.3034 -0.6331 -2.9653 32 1 0.3661 1.1501 -2.9384 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695862087.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:55 Heat of formation + Delta-G solvation = -85.362232 kcal Electronic energy + Delta-G solvation = -13145.263814 eV Core-core repulsion = 10911.068262 eV Total energy + Delta-G solvation = -2234.195553 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.26747 -37.97203 -35.50928 -32.99351 -30.44590 -29.31453 -28.76862 -25.12562 -22.69725 -22.07365 -21.94838 -19.01380 -18.20567 -16.98661 -16.72876 -15.76952 -15.55254 -15.12990 -14.58948 -14.36796 -14.06450 -13.80473 -13.43100 -13.13036 -13.09906 -12.69703 -12.52871 -12.39571 -12.14803 -11.95099 -11.60360 -11.43664 -10.86842 -10.57200 -10.39693 -9.49132 -8.69300 -6.37369 1.49077 1.58748 1.76497 2.54980 2.69332 3.16179 3.32322 3.65288 3.83687 4.02954 4.06892 4.26901 4.27998 4.40137 4.50184 4.57008 4.73769 4.82113 4.86332 4.97717 5.02974 5.07104 5.09291 5.22041 5.31872 5.73104 5.97498 6.16721 6.36048 6.49470 6.60624 7.41798 8.71985 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.039908 B = 0.009452 C = 0.007883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.449753 B = 2961.575716 C = 3550.876683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.104 3.896 3 H 0.048 0.952 4 C 0.008 3.992 5 C -0.601 4.601 6 H 0.044 0.956 7 C -0.042 4.042 8 N -0.940 5.940 9 Si 1.119 2.881 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.269 1.269 13 O -0.382 6.382 14 C 0.057 3.943 15 H 0.062 0.938 16 C -0.152 4.152 17 C 0.056 3.944 18 N -0.683 5.683 19 C 0.033 3.967 20 H 0.068 0.932 21 H 0.073 0.927 22 H 0.052 0.948 23 H -0.011 1.011 24 H 0.009 0.991 25 H 0.255 0.745 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.349 0.651 31 H 0.059 0.941 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.948 4.807 -14.188 15.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.046 3.954 3 H 0.066 0.934 4 C -0.029 4.029 5 C -0.639 4.639 6 H 0.063 0.937 7 C -0.239 4.239 8 N -0.578 5.578 9 Si 0.940 3.060 10 H -0.201 1.201 11 H -0.205 1.205 12 H -0.194 1.194 13 O -0.301 6.301 14 C -0.002 4.002 15 H 0.080 0.920 16 C -0.190 4.190 17 C -0.073 4.073 18 N -0.313 5.313 19 C -0.096 4.096 20 H 0.087 0.913 21 H 0.092 0.908 22 H 0.071 0.929 23 H 0.007 0.993 24 H 0.027 0.973 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.165 0.835 31 H 0.078 0.922 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.685 4.904 -13.403 14.371 hybrid contribution -1.420 -0.491 -0.143 1.509 sum -3.104 4.413 -13.547 14.582 Atomic orbital electron populations 1.22296 0.94876 1.02203 1.02716 1.22058 0.93369 0.94677 0.85260 0.93434 1.19311 0.96310 0.94556 0.92681 1.22325 0.93197 1.37789 1.10566 0.93716 1.27410 1.11413 0.92748 0.92291 1.70892 1.09632 1.41939 1.35379 0.82924 0.69102 0.77365 0.76637 1.20078 1.20510 1.19363 1.87970 1.86538 1.35512 1.20080 1.23582 0.95892 0.93692 0.87056 0.91989 1.23183 0.98925 1.01037 0.95898 1.22856 0.87404 1.01542 0.95460 1.61738 1.08596 1.49231 1.11688 1.23096 0.96728 1.01907 0.87915 0.91287 0.90784 0.92904 0.99296 0.97295 0.93605 0.90510 0.91410 0.88668 0.89747 0.83476 0.92221 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.59 9.37 71.98 0.67 -4.92 16 2 C 0.10 4.48 2.67 30.59 0.08 4.57 16 3 H 0.05 2.03 7.42 -2.39 -0.02 2.01 16 4 C 0.01 0.46 4.00 29.85 0.12 0.57 16 5 C -0.60 -35.65 8.88 25.60 0.23 -35.42 16 6 H 0.04 2.62 7.74 -2.91 -0.02 2.60 16 7 C -0.04 -2.52 5.46 84.65 0.46 -2.05 16 8 N -0.94 -59.95 13.65 21.45 0.29 -59.66 16 9 Si 1.12 51.97 29.90 68.60 2.05 54.02 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 13 O -0.38 -16.35 9.48 -148.98 -1.41 -17.76 16 14 C 0.06 1.89 3.39 31.77 0.11 1.99 16 15 H 0.06 2.09 7.47 -2.39 -0.02 2.07 16 16 C -0.15 -4.34 6.80 31.98 0.22 -4.12 16 17 C 0.06 1.20 7.57 86.78 0.66 1.86 16 18 N -0.68 -15.44 7.39 -504.44 -3.73 -19.17 16 19 C 0.03 0.90 6.15 86.65 0.53 1.43 16 20 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 21 H 0.07 2.10 6.80 -2.39 -0.02 2.09 16 22 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 23 H -0.01 -0.66 8.01 -2.39 -0.02 -0.68 16 24 H 0.01 0.50 8.01 -2.39 -0.02 0.48 16 25 H 0.25 16.40 7.22 -92.71 -0.67 15.73 16 26 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.35 6.61 8.91 -89.69 -0.80 5.81 16 31 H 0.06 1.64 8.06 -2.39 -0.02 1.62 16 32 H 0.08 2.03 7.88 -2.38 -0.02 2.01 16 Total: -1.00 -68.31 262.39 0.67 -67.64 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.38 Total: 11.02 kcal Atomic # 6 Polarization: -39.18 SS G_CDS: 3.08 Total: -36.10 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -3.44 Total: -78.83 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -1.41 Total: -17.76 kcal Atomic # 14 Polarization: 51.97 SS G_CDS: 2.05 Total: 54.02 kcal Total: -68.31 0.67 -67.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695862087.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.724 kcal (2) G-P(sol) polarization free energy of solvation -68.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds