Wall clock time and date at job start Mon Mar 30 2020 02:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 O 1.42895 * 109.47300 * 120.00020 * 2 1 3 14 14 C 1.42897 * 114.00212 * 270.00014 * 13 2 1 15 15 C 1.53785 * 113.61292 * 247.49666 * 14 13 2 16 16 C 1.53779 * 87.07886 * 220.01785 * 15 14 13 17 17 N 1.46904 * 113.61838 * 270.88332 * 16 15 14 18 18 C 1.53778 * 113.61426 * 149.99883 * 14 13 2 19 19 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 21 21 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 22 22 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 23 23 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 24 24 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 25 25 H 1.09001 * 112.85040 * 18.80529 * 14 13 2 26 26 H 1.08998 * 113.61593 * 334.56829 * 15 14 13 27 27 H 1.09006 * 113.60906 * 105.47195 * 15 14 13 28 28 H 1.08999 * 113.61538 * 139.98696 * 16 15 14 29 29 H 1.00897 * 111.00218 * 277.50482 * 17 16 15 30 30 H 1.00906 * 110.99511 * 41.45198 * 17 16 15 31 31 H 1.08994 * 113.61979 * 254.53092 * 18 14 13 32 32 H 1.09005 * 113.61367 * 25.43689 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 3.5759 -1.8323 -3.3029 9 14 6.0908 -1.0495 -2.4440 10 1 6.6881 -1.6765 -1.2375 11 1 6.5854 -1.7454 -3.6591 12 1 6.4786 0.3828 -2.5010 13 8 2.0063 -0.6736 1.1667 14 6 2.2001 0.1829 2.2940 15 6 3.6752 0.3469 2.6967 16 6 3.2024 0.2758 4.1583 17 7 2.8489 1.5835 4.7268 18 6 1.9910 -0.5206 3.6453 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 1.6052 -0.2616 -2.1370 23 1 1.7516 -1.7714 -1.2057 24 1 4.0598 -2.2352 -4.0406 25 1 1.6626 1.1271 2.2056 26 1 4.3046 -0.4921 2.4001 27 1 4.0982 1.3130 2.4211 28 1 3.8637 -0.3025 4.8035 29 1 3.6708 2.0712 5.0502 30 1 2.3366 2.1411 4.0599 31 1 1.0545 -0.2551 4.1357 32 1 2.1601 -1.5969 3.6081 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695862676.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:43 Heat of formation + Delta-G solvation = -62.743713 kcal Electronic energy + Delta-G solvation = -13066.466871 eV Core-core repulsion = 10833.252130 eV Total energy + Delta-G solvation = -2233.214740 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.56024 -38.03395 -35.13531 -33.07982 -31.50461 -29.30087 -26.61358 -25.40233 -24.46876 -21.91808 -20.06090 -18.52287 -18.28946 -16.81765 -16.45106 -16.17877 -15.39066 -15.28753 -14.59707 -14.18163 -13.84399 -13.51487 -13.47190 -13.28429 -12.90645 -12.69275 -12.55314 -12.51375 -12.16319 -11.79334 -11.31356 -11.20021 -11.05773 -10.57758 -10.11341 -9.65397 -8.19135 -6.27674 1.36466 1.39980 1.47639 2.40136 2.98523 3.16766 3.48536 3.66116 3.78620 3.96961 4.07612 4.23684 4.40019 4.48101 4.58257 4.82304 4.86090 4.92972 5.04634 5.10553 5.18096 5.23905 5.28439 5.44767 5.53891 5.79877 6.17666 6.24222 6.56605 6.69732 6.85196 7.39064 8.92978 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.034477 B = 0.009908 C = 0.008109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.940537 B = 2825.193526 C = 3452.205204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 H 0.048 0.952 4 C 0.025 3.975 5 C -0.523 4.523 6 H 0.054 0.946 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.265 1.265 13 O -0.381 6.381 14 C 0.051 3.949 15 C -0.194 4.194 16 C 0.087 3.913 17 N -0.827 5.827 18 C -0.127 4.127 19 H 0.050 0.950 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.011 0.989 23 H -0.009 1.009 24 H 0.263 0.737 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.354 0.646 30 H 0.345 0.655 31 H 0.085 0.915 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.613 6.713 13.068 14.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.067 0.933 4 C -0.012 4.012 5 C -0.561 4.561 6 H 0.073 0.927 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.190 1.190 13 O -0.300 6.300 14 C -0.007 4.007 15 C -0.235 4.235 16 C -0.026 4.026 17 N -0.357 5.357 18 C -0.165 4.165 19 H 0.069 0.931 20 H 0.089 0.911 21 H 0.086 0.914 22 H 0.030 0.970 23 H 0.009 0.991 24 H 0.072 0.928 25 H 0.108 0.892 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.121 0.879 29 H 0.169 0.831 30 H 0.158 0.842 31 H 0.103 0.897 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.979 6.020 13.468 14.884 hybrid contribution 1.413 0.338 -1.467 2.065 sum -0.566 6.358 12.001 13.592 Atomic orbital electron populations 1.22244 0.95316 1.02072 1.02363 1.22159 0.93118 0.94934 0.85825 0.93343 1.19133 0.95541 0.94728 0.91804 1.21454 0.93276 1.34009 1.07386 0.92745 1.25921 1.03562 0.95045 0.95394 1.70078 1.37603 1.37232 1.12731 0.85569 0.79632 0.78720 0.77543 1.19665 1.20678 1.19017 1.88012 1.86236 1.35651 1.20148 1.23905 0.96054 0.94374 0.86382 1.24300 0.97805 1.01954 0.99402 1.22171 0.96277 0.92234 0.91926 1.58722 1.28634 1.05061 1.43259 1.23289 0.99587 1.00205 0.93412 0.93113 0.91138 0.91361 0.97044 0.99077 0.92830 0.89208 0.91113 0.91644 0.87892 0.83118 0.84201 0.89688 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.65 9.53 71.98 0.69 -4.96 16 2 C 0.10 4.18 2.54 30.59 0.08 4.25 16 3 H 0.05 2.01 7.73 -2.38 -0.02 1.99 16 4 C 0.02 1.37 4.68 29.85 0.14 1.51 16 5 C -0.52 -30.71 8.88 25.60 0.23 -30.48 16 6 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 8 N -0.94 -58.26 13.29 21.45 0.28 -57.97 16 9 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 O -0.38 -16.26 9.75 -148.98 -1.45 -17.71 16 14 C 0.05 1.62 3.79 31.12 0.12 1.74 16 15 C -0.19 -5.80 7.63 31.12 0.24 -5.57 16 16 C 0.09 2.01 5.18 45.44 0.24 2.24 16 17 N -0.83 -15.61 9.64 -166.49 -1.60 -17.21 16 18 C -0.13 -3.38 7.71 31.12 0.24 -3.14 16 19 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 20 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 21 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 22 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 23 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 24 H 0.26 15.40 8.31 -92.71 -0.77 14.62 16 25 H 0.09 2.53 7.34 -2.39 -0.02 2.51 16 26 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.35 5.35 9.08 -89.70 -0.81 4.54 16 30 H 0.34 6.19 8.15 -89.69 -0.73 5.46 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -66.85 268.69 1.23 -65.62 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -0.45 Total: 13.81 kcal Atomic # 6 Polarization: -36.49 SS G_CDS: 2.42 Total: -34.07 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -1.32 Total: -75.19 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -1.45 Total: -17.71 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -66.85 1.23 -65.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695862676.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.874 kcal (2) G-P(sol) polarization free energy of solvation -66.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds