Wall clock time and date at job start Mon Mar 30 2020 02:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.53006 * 109.47127 * 119.99679 * 2 1 3 5 5 C 1.50699 * 109.47053 * 184.99965 * 4 2 1 6 6 H 1.07995 * 119.99640 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99593 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00495 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99694 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47173 * 90.00315 * 9 7 5 11 11 H 1.48500 * 109.47023 * 210.00257 * 9 7 5 12 12 H 1.48502 * 109.47434 * 330.00234 * 9 7 5 13 13 O 1.42895 * 109.47503 * 239.99766 * 2 1 3 14 14 C 1.42898 * 113.99757 * 89.99640 * 13 2 1 15 15 C 1.53781 * 113.61698 * 247.49743 * 14 13 2 16 16 C 1.53780 * 87.08184 * 220.01986 * 15 14 13 17 17 N 1.46901 * 113.61837 * 270.88116 * 16 15 14 18 18 C 1.53773 * 87.08093 * 25.43492 * 16 15 14 19 19 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 20 20 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 22 22 H 1.08997 * 109.47395 * 305.00572 * 4 2 1 23 23 H 1.09004 * 109.46579 * 64.99848 * 4 2 1 24 24 H 0.97000 * 120.00169 * 179.97438 * 8 7 5 25 25 H 1.09002 * 112.84913 * 18.81006 * 14 13 2 26 26 H 1.08997 * 113.61500 * 334.57581 * 15 14 13 27 27 H 1.09011 * 113.61147 * 105.47431 * 15 14 13 28 28 H 1.09004 * 113.61309 * 139.98375 * 16 15 14 29 29 H 1.00895 * 111.00432 * 277.50619 * 17 16 15 30 30 H 1.00907 * 110.99523 * 41.45539 * 17 16 15 31 31 H 1.08999 * 113.61652 * 220.01739 * 18 16 15 32 32 H 1.09004 * 113.61718 * 89.11121 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0788 -0.0855 0.5396 7 6 4.2302 -1.1925 2.3584 8 7 3.5763 -1.8368 3.3002 9 14 6.0919 -1.0601 2.4375 10 1 6.4696 0.1626 3.1907 11 1 6.6444 -2.2551 3.1244 12 1 6.6416 -0.9826 1.0601 13 8 2.0064 -0.6736 -1.1667 14 6 2.2001 0.1829 -2.2940 15 6 1.2206 -0.0871 -3.4483 16 6 2.4062 0.1351 -4.4021 17 7 2.5795 1.5359 -4.8093 18 6 3.3194 -0.2857 -3.2386 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.6053 -0.2618 2.1370 23 1 1.7516 -1.7715 1.2057 24 1 4.0606 -2.2435 4.0356 25 1 2.2731 1.2350 -2.0185 26 1 0.8332 -1.1058 -3.4631 27 1 0.4379 0.6659 -3.5420 28 1 2.4249 -0.5568 -5.2441 29 1 1.9631 1.7694 -5.5731 30 1 2.4397 2.1594 -4.0283 31 1 4.2312 0.3067 -3.1628 32 1 3.5059 -1.3589 -3.1960 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695862678.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:45 Heat of formation + Delta-G solvation = -62.528840 kcal Electronic energy + Delta-G solvation = -13029.272260 eV Core-core repulsion = 10796.066837 eV Total energy + Delta-G solvation = -2233.205423 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.56758 -38.02796 -35.13237 -33.08004 -31.52246 -29.30874 -26.59923 -25.36744 -24.49585 -21.97438 -20.07334 -18.50875 -18.25317 -16.77052 -16.39347 -16.23313 -15.57299 -15.25630 -14.54983 -14.12636 -13.65785 -13.64471 -13.45730 -13.25390 -13.02344 -12.74339 -12.57077 -12.41630 -12.21355 -11.71876 -11.33801 -11.17135 -11.08096 -10.57581 -10.11748 -9.63131 -8.19189 -6.27867 1.37786 1.39732 1.51062 2.41120 2.98459 3.16837 3.49609 3.65045 3.77089 3.99815 4.09962 4.21495 4.41588 4.46190 4.59680 4.81080 4.85388 4.92146 5.04312 5.11100 5.18397 5.22891 5.26445 5.44629 5.53938 5.79940 6.19574 6.24024 6.59940 6.69663 6.85314 7.39262 8.92990 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.037758 B = 0.009256 C = 0.007786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.387110 B = 3024.403129 C = 3595.423199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 H 0.049 0.951 4 C 0.024 3.976 5 C -0.525 4.525 6 H 0.053 0.947 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.268 1.268 13 O -0.381 6.381 14 C 0.049 3.951 15 C -0.179 4.179 16 C 0.088 3.912 17 N -0.832 5.832 18 C -0.141 4.141 19 H 0.069 0.931 20 H 0.049 0.951 21 H 0.067 0.933 22 H 0.012 0.988 23 H -0.009 1.009 24 H 0.263 0.737 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.357 0.643 30 H 0.344 0.656 31 H 0.067 0.933 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.374 6.200 -13.859 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.040 3.960 3 H 0.067 0.933 4 C -0.013 4.013 5 C -0.563 4.563 6 H 0.071 0.929 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.786 3.214 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.192 1.192 13 O -0.300 6.300 14 C -0.009 4.009 15 C -0.219 4.219 16 C -0.025 4.025 17 N -0.363 5.363 18 C -0.179 4.179 19 H 0.088 0.912 20 H 0.068 0.932 21 H 0.085 0.915 22 H 0.030 0.970 23 H 0.010 0.990 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.125 0.875 29 H 0.172 0.828 30 H 0.158 0.842 31 H 0.086 0.914 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.565 5.714 -13.907 15.451 hybrid contribution -0.174 0.052 0.959 0.976 sum -3.739 5.766 -12.947 14.658 Atomic orbital electron populations 1.22225 0.95287 1.01968 1.02255 1.22203 0.93207 0.94860 0.85773 0.93262 1.19147 0.95491 0.94765 0.91874 1.21491 0.93335 1.33936 1.07535 0.92857 1.25922 1.03634 0.94965 0.95363 1.70086 1.37542 1.37141 1.12850 0.85499 0.79557 0.77905 0.78423 1.19454 1.20660 1.19226 1.87997 1.86134 1.35586 1.20277 1.23942 0.97361 0.94071 0.85551 1.24245 0.97973 1.03084 0.96594 1.22155 0.93366 0.91313 0.95668 1.58637 1.61687 1.02075 1.13871 1.23381 0.97730 1.01852 0.94980 0.91241 0.93168 0.91451 0.97009 0.99044 0.92811 0.89982 0.89728 0.90285 0.87548 0.82845 0.84237 0.91442 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.53 9.53 71.98 0.69 -4.85 16 2 C 0.10 4.18 2.66 30.60 0.08 4.26 16 3 H 0.05 2.05 7.42 -2.39 -0.02 2.03 16 4 C 0.02 1.33 4.68 29.85 0.14 1.47 16 5 C -0.52 -31.08 8.88 25.60 0.23 -30.86 16 6 H 0.05 3.10 7.74 -2.91 -0.02 3.07 16 7 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 8 N -0.94 -58.40 13.29 21.45 0.28 -58.11 16 9 Si 0.96 45.91 29.54 68.60 2.03 47.93 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 O -0.38 -16.28 9.75 -148.98 -1.45 -17.74 16 14 C 0.05 1.57 3.92 31.12 0.12 1.69 16 15 C -0.18 -4.36 7.63 31.12 0.24 -4.12 16 16 C 0.09 1.94 5.18 45.44 0.24 2.17 16 17 N -0.83 -15.64 9.64 -166.50 -1.60 -17.24 16 18 C -0.14 -4.21 7.71 31.12 0.24 -3.97 16 19 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 20 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 21 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 22 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 23 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 24 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 25 H 0.08 2.49 7.03 -2.39 -0.02 2.47 16 26 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.36 4.88 9.08 -89.70 -0.81 4.07 16 30 H 0.34 6.32 8.15 -89.69 -0.73 5.59 16 31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 Total: -1.00 -67.54 268.32 1.24 -66.31 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -0.45 Total: 12.69 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 2.43 Total: -33.84 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -1.32 Total: -75.35 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -1.45 Total: -17.74 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -67.54 1.24 -66.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695862678.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.777 kcal (2) G-P(sol) polarization free energy of solvation -67.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds