Wall clock time and date at job start Mon Mar 30 2020 02:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47042 * 2 1 4 4 C 1.52998 * 109.47187 * 240.00257 * 2 1 3 5 5 C 1.50703 * 109.47166 * 175.00041 * 4 2 1 6 6 H 1.07993 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99866 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00032 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00167 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47162 * 89.99375 * 9 7 5 11 11 H 1.48498 * 109.47427 * 210.00027 * 9 7 5 12 12 H 1.48504 * 109.46730 * 330.00011 * 9 7 5 13 13 N 1.46903 * 109.47107 * 119.99975 * 2 1 3 14 14 C 1.47473 * 110.99975 * 33.18428 * 13 2 1 15 15 C 1.53517 * 87.92999 * 221.29459 * 14 13 2 16 16 C 1.53002 * 114.16834 * 139.67213 * 15 14 13 17 17 O 1.42901 * 109.47454 * 91.16072 * 16 15 14 18 18 C 1.47477 * 110.99918 * 297.20845 * 13 2 1 19 19 H 1.09001 * 109.47080 * 49.92238 * 1 2 3 20 20 H 1.08998 * 109.47193 * 169.92378 * 1 2 3 21 21 H 1.09000 * 109.46997 * 289.92074 * 1 2 3 22 22 H 1.09001 * 109.47244 * 54.99563 * 4 2 1 23 23 H 1.08998 * 109.47026 * 294.99774 * 4 2 1 24 24 H 0.97000 * 120.00248 * 180.02562 * 8 7 5 25 25 H 1.09001 * 113.48180 * 336.06000 * 14 13 2 26 26 H 1.09004 * 113.47718 * 106.53175 * 14 13 2 27 27 H 1.08999 * 114.16749 * 272.37588 * 15 14 13 28 28 H 1.09004 * 109.47025 * 211.15817 * 16 15 14 29 29 H 1.09002 * 109.47269 * 331.15929 * 16 15 14 30 30 H 0.96692 * 114.00520 * 179.97438 * 17 16 15 31 31 H 1.08997 * 113.48016 * 253.46959 * 18 13 2 32 32 H 1.08998 * 113.47592 * 23.88350 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0789 -0.0855 -0.5396 7 6 4.2303 -1.1925 -2.3584 8 7 3.5763 -1.8368 -3.3001 9 14 6.0919 -1.0602 -2.4375 10 1 6.7009 -2.2127 -1.7261 11 1 6.5289 -1.0674 -3.8567 12 1 6.5260 0.2051 -1.7924 13 7 2.0197 -0.6925 1.1995 14 6 1.1095 -1.7863 1.5868 15 6 1.3059 -1.3576 3.0478 16 6 0.0294 -1.4003 3.8902 17 8 -0.0878 -2.6812 4.5129 18 6 1.6023 0.0139 2.4249 19 1 -0.3633 0.6616 -0.7863 20 1 -0.3633 -1.0118 -0.1798 21 1 -0.3633 0.3501 0.9662 22 1 1.6053 -0.2617 -2.1370 23 1 1.7517 -1.7714 -1.2056 24 1 4.0607 -2.2435 -4.0355 25 1 0.0893 -1.6501 1.2277 26 1 1.5050 -2.7783 1.3685 27 1 2.1629 -1.8201 3.5372 28 1 0.0737 -0.6265 4.6566 29 1 -0.8351 -1.2277 3.2490 30 1 -0.8759 -2.7799 5.0644 31 1 2.4155 0.5475 2.9169 32 1 0.7143 0.6312 2.2892 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695885937.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:20 Heat of formation + Delta-G solvation = -13.536744 kcal Electronic energy + Delta-G solvation = -13103.287686 eV Core-core repulsion = 10872.206720 eV Total energy + Delta-G solvation = -2231.080966 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.20637 -36.61968 -33.85827 -31.92378 -28.54707 -27.38834 -25.59237 -24.27642 -22.66802 -19.73731 -18.56339 -17.29538 -16.18175 -15.72028 -15.50201 -14.44233 -14.34015 -13.62676 -13.32154 -13.08541 -12.25611 -12.03837 -11.64820 -11.38867 -11.18213 -10.77439 -10.66613 -10.58673 -10.41720 -10.26056 -9.81422 -9.78749 -9.19281 -8.99019 -8.24113 -7.97330 -5.86002 -3.84022 3.42170 3.47449 3.51696 4.13505 4.57100 4.60598 4.75977 5.17580 5.43815 5.44131 5.51100 5.54891 5.63156 5.70049 5.78185 5.92286 5.99750 6.09170 6.21540 6.41727 6.49534 6.63566 6.92285 7.16312 7.57633 7.58779 7.81721 7.98197 8.14009 8.60357 9.21365 9.77537 11.26184 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049180 B = 0.008216 C = 0.007767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.194753 B = 3407.274537 C = 3603.942265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.049 3.951 3 H 0.070 0.930 4 C 0.036 3.964 5 C -0.492 4.492 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.437 5.437 14 C -0.004 4.004 15 C -0.119 4.119 16 C 0.088 3.912 17 O -0.571 6.571 18 C -0.005 4.005 19 H 0.057 0.943 20 H 0.059 0.941 21 H 0.044 0.956 22 H 0.018 0.982 23 H 0.017 0.983 24 H 0.257 0.743 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.374 0.626 31 H 0.079 0.921 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.443 2.459 12.420 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.060 4.060 3 H 0.088 0.912 4 C -0.002 4.002 5 C -0.531 4.531 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.159 5.159 14 C -0.132 4.132 15 C -0.138 4.138 16 C 0.009 3.991 17 O -0.376 6.376 18 C -0.134 4.134 19 H 0.076 0.924 20 H 0.078 0.922 21 H 0.063 0.937 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.122 0.878 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.220 0.780 31 H 0.097 0.903 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.118 2.167 11.738 13.897 hybrid contribution -0.382 0.358 0.157 0.547 sum -7.500 2.525 11.895 14.287 Atomic orbital electron populations 1.22563 0.99319 1.01760 1.00496 1.22352 0.90587 0.98978 0.94042 0.91175 1.19063 0.96339 0.95234 0.89526 1.21171 0.91850 1.33076 1.06969 0.92276 1.25010 0.98139 0.95827 0.95949 1.69966 1.35238 1.36939 1.12373 0.86602 0.86286 0.78374 0.76741 1.20849 1.21564 1.20032 1.69286 1.41578 1.05018 0.99993 1.24049 0.97643 0.98714 0.92829 1.22750 0.97575 0.98273 0.95232 1.22203 0.97331 0.84539 0.94983 1.86540 1.48701 1.34708 1.67627 1.23863 0.99875 0.95388 0.94273 0.92428 0.92207 0.93703 0.96380 0.96497 0.93310 0.90454 0.90141 0.87769 0.93734 0.93757 0.78004 0.90257 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 7.72 37.16 0.29 -2.82 16 2 C 0.05 1.03 2.36 -67.71 -0.16 0.87 16 3 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 4 C 0.04 0.94 4.57 -27.88 -0.13 0.81 16 5 C -0.49 -14.36 8.84 -34.44 -0.30 -14.67 16 6 H 0.06 1.72 7.74 -52.49 -0.41 1.32 16 7 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 8 N -0.90 -28.02 13.29 55.43 0.74 -27.29 16 9 Si 0.89 22.68 29.54 -169.99 -5.02 17.66 16 10 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.44 -8.76 6.06 -236.60 -1.43 -10.19 16 14 C 0.00 -0.06 6.83 -7.55 -0.05 -0.11 16 15 C -0.12 -1.77 4.35 -90.09 -0.39 -2.16 16 16 C 0.09 1.02 6.96 37.16 0.26 1.28 16 17 O -0.57 -6.86 13.66 -35.23 -0.48 -7.35 16 18 C 0.00 -0.07 7.11 -7.55 -0.05 -0.13 16 19 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 20 H 0.06 1.02 6.52 -51.93 -0.34 0.69 16 21 H 0.04 0.64 5.83 -51.93 -0.30 0.34 16 22 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.02 0.48 8.06 -51.93 -0.42 0.06 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.08 1.27 4.56 -51.93 -0.24 1.03 16 26 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 27 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.48 7.81 -51.93 -0.41 0.08 16 30 H 0.37 2.54 9.12 45.56 0.42 2.96 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 0.90 5.94 -51.93 -0.31 0.59 16 LS Contribution 258.94 15.07 3.90 3.90 Total: -1.00 -32.77 258.94 -7.03 -39.80 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -4.10 Total: -1.00 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -0.64 Total: -15.54 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: -0.70 Total: -37.48 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.48 Total: -7.35 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.77 -7.03 -39.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695885937.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.265 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds