Wall clock time and date at job start Mon Mar 30 2020 02:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47042 * 2 1 4 4 C 1.52998 * 109.47187 * 240.00257 * 2 1 3 5 5 C 1.50703 * 109.47166 * 175.00041 * 4 2 1 6 6 H 1.07993 * 120.00119 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99866 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00032 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00167 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47162 * 89.99375 * 9 7 5 11 11 H 1.48498 * 109.47427 * 210.00027 * 9 7 5 12 12 H 1.48504 * 109.46730 * 330.00011 * 9 7 5 13 13 N 1.46903 * 109.47107 * 119.99975 * 2 1 3 14 14 C 1.47473 * 110.99975 * 33.18428 * 13 2 1 15 15 C 1.53517 * 87.92999 * 221.29459 * 14 13 2 16 16 C 1.53002 * 114.16834 * 139.67213 * 15 14 13 17 17 O 1.42901 * 109.47454 * 91.16072 * 16 15 14 18 18 C 1.47477 * 110.99918 * 297.20845 * 13 2 1 19 19 H 1.09001 * 109.47080 * 49.92238 * 1 2 3 20 20 H 1.08998 * 109.47193 * 169.92378 * 1 2 3 21 21 H 1.09000 * 109.46997 * 289.92074 * 1 2 3 22 22 H 1.09001 * 109.47244 * 54.99563 * 4 2 1 23 23 H 1.08998 * 109.47026 * 294.99774 * 4 2 1 24 24 H 0.97000 * 120.00248 * 180.02562 * 8 7 5 25 25 H 1.09001 * 113.48180 * 336.06000 * 14 13 2 26 26 H 1.09004 * 113.47718 * 106.53175 * 14 13 2 27 27 H 1.08999 * 114.16749 * 272.37588 * 15 14 13 28 28 H 1.09004 * 109.47025 * 211.15817 * 16 15 14 29 29 H 1.09002 * 109.47269 * 331.15929 * 16 15 14 30 30 H 0.96692 * 114.00520 * 179.97438 * 17 16 15 31 31 H 1.08997 * 113.48016 * 253.46959 * 18 13 2 32 32 H 1.08998 * 113.47592 * 23.88350 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0789 -0.0855 -0.5396 7 6 4.2303 -1.1925 -2.3584 8 7 3.5763 -1.8368 -3.3001 9 14 6.0919 -1.0602 -2.4375 10 1 6.7009 -2.2127 -1.7261 11 1 6.5289 -1.0674 -3.8567 12 1 6.5260 0.2051 -1.7924 13 7 2.0197 -0.6925 1.1995 14 6 1.1095 -1.7863 1.5868 15 6 1.3059 -1.3576 3.0478 16 6 0.0294 -1.4003 3.8902 17 8 -0.0878 -2.6812 4.5129 18 6 1.6023 0.0139 2.4249 19 1 -0.3633 0.6616 -0.7863 20 1 -0.3633 -1.0118 -0.1798 21 1 -0.3633 0.3501 0.9662 22 1 1.6053 -0.2617 -2.1370 23 1 1.7517 -1.7714 -1.2056 24 1 4.0607 -2.2435 -4.0355 25 1 0.0893 -1.6501 1.2277 26 1 1.5050 -2.7783 1.3685 27 1 2.1629 -1.8201 3.5372 28 1 0.0737 -0.6265 4.6566 29 1 -0.8351 -1.2277 3.2490 30 1 -0.8759 -2.7799 5.0644 31 1 2.4155 0.5475 2.9169 32 1 0.7143 0.6312 2.2892 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695885937.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:20 Heat of formation + Delta-G solvation = -40.195043 kcal Electronic energy + Delta-G solvation = -13104.443676 eV Core-core repulsion = 10872.206720 eV Total energy + Delta-G solvation = -2232.236957 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.57448 -37.57248 -35.69980 -33.86319 -29.91629 -29.21689 -26.91918 -25.75023 -24.50980 -21.15012 -19.99955 -18.44125 -18.18773 -17.10012 -16.78448 -16.46489 -15.56570 -15.07743 -14.51281 -14.39683 -14.17726 -13.73653 -13.35207 -12.99871 -12.67645 -12.55647 -12.42764 -12.13256 -11.90372 -11.61191 -11.43761 -11.17813 -11.04524 -10.74589 -10.52751 -9.42838 -8.14333 -6.20305 1.38482 1.40795 1.51320 2.44329 3.13823 3.19759 3.29391 3.64199 4.09042 4.14769 4.27260 4.37072 4.43935 4.46799 4.58045 4.62037 4.77593 4.79309 4.86821 4.99427 5.14460 5.17409 5.36241 5.43193 5.60396 5.75759 5.89072 6.27964 6.48652 6.93537 6.99253 7.45850 8.98038 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049180 B = 0.008216 C = 0.007767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.194753 B = 3407.274537 C = 3603.942265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.056 3.944 3 H 0.065 0.935 4 C 0.041 3.959 5 C -0.507 4.507 6 H 0.055 0.945 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.961 3.039 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.265 1.265 13 N -0.482 5.482 14 C -0.009 4.009 15 C -0.106 4.106 16 C 0.093 3.907 17 O -0.595 6.595 18 C 0.005 3.995 19 H 0.063 0.937 20 H 0.054 0.946 21 H 0.080 0.920 22 H -0.006 1.006 23 H -0.015 1.015 24 H 0.260 0.740 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.397 0.603 31 H 0.085 0.915 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.894 3.493 14.147 17.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.052 4.052 3 H 0.084 0.916 4 C 0.003 3.997 5 C -0.546 4.546 6 H 0.074 0.926 7 C -0.203 4.203 8 N -0.583 5.583 9 Si 0.786 3.214 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.189 1.189 13 N -0.203 5.203 14 C -0.138 4.138 15 C -0.125 4.125 16 C 0.015 3.985 17 O -0.403 6.403 18 C -0.123 4.123 19 H 0.082 0.918 20 H 0.073 0.927 21 H 0.099 0.901 22 H 0.012 0.988 23 H 0.003 0.997 24 H 0.069 0.931 25 H 0.111 0.889 26 H 0.067 0.933 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.247 0.753 31 H 0.103 0.897 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.589 3.208 13.491 15.808 hybrid contribution -0.257 -0.003 -0.366 0.447 sum -7.845 3.205 13.125 15.623 Atomic orbital electron populations 1.22433 0.96060 1.01867 1.02770 1.22065 0.93217 0.97656 0.92295 0.91628 1.18922 0.95238 0.93786 0.91728 1.21519 0.93447 1.32815 1.06792 0.92637 1.25922 1.03359 0.95459 0.95603 1.70095 1.37271 1.37846 1.13049 0.85508 0.80062 0.78701 0.77102 1.20443 1.20722 1.18900 1.69169 1.43271 1.06786 1.01121 1.24120 0.97722 0.96658 0.95254 1.22612 0.98974 0.97100 0.93857 1.22126 0.95646 0.85194 0.95511 1.86475 1.50535 1.34987 1.68316 1.23884 1.01012 0.95762 0.91657 0.91834 0.92729 0.90131 0.98776 0.99652 0.93129 0.88937 0.93278 0.89294 0.91050 0.92340 0.75306 0.89675 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.56 7.72 71.98 0.56 -5.01 16 2 C 0.06 2.36 2.36 44.91 0.11 2.47 16 3 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 4 C 0.04 2.22 4.57 29.85 0.14 2.35 16 5 C -0.51 -30.28 8.84 25.60 0.23 -30.06 16 6 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 7 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 8 N -0.94 -59.69 13.29 21.45 0.28 -59.41 16 9 Si 0.96 47.01 29.54 68.60 2.03 49.04 16 10 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 12 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 13 N -0.48 -19.09 6.06 -902.46 -5.47 -24.56 16 14 C -0.01 -0.31 6.83 83.58 0.57 0.26 16 15 C -0.11 -2.95 4.35 -10.45 -0.05 -3.00 16 16 C 0.09 1.84 6.96 71.98 0.50 2.34 16 17 O -0.59 -12.64 13.66 -148.98 -2.04 -14.67 16 18 C 0.01 0.15 7.11 83.58 0.59 0.75 16 19 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 20 H 0.05 1.81 6.52 -2.39 -0.02 1.79 16 21 H 0.08 2.01 5.83 -2.39 -0.01 1.99 16 22 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 23 H -0.01 -0.90 8.06 -2.39 -0.02 -0.92 16 24 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 25 H 0.09 2.90 4.56 -2.39 -0.01 2.89 16 26 H 0.05 1.96 8.14 -2.38 -0.02 1.95 16 27 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.01 7.81 -2.39 -0.02 0.99 16 30 H 0.40 4.14 9.12 -74.06 -0.68 3.46 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.09 2.11 5.94 -2.39 -0.01 2.09 16 Total: -1.00 -72.17 258.94 -1.66 -73.83 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 0.42 Total: 5.65 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 3.11 Total: -29.88 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -5.18 Total: -83.96 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -2.04 Total: -14.67 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -72.17 -1.66 -73.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695885937.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.635 kcal (2) G-P(sol) polarization free energy of solvation -72.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds