Wall clock time and date at job start Mon Mar 30 2020 02:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 H 1.09004 * 110.45305 * 325.69867 * 13 12 2 15 15 C 1.54482 * 110.50835 * 88.30370 * 13 12 2 16 16 O 1.44421 * 104.80137 * 142.62495 * 15 13 12 17 17 C 1.44428 * 105.27431 * 319.48830 * 16 15 13 18 18 C 1.54501 * 110.51033 * 203.09158 * 13 12 2 19 19 H 1.09004 * 110.51525 * 0.02562 * 18 13 12 20 20 C 1.53004 * 110.50844 * 122.71004 * 18 13 12 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 25 25 H 1.00900 * 110.99634 * 38.94573 * 12 2 1 26 26 H 1.09002 * 110.37422 * 261.44945 * 15 13 12 27 27 H 1.08999 * 110.37513 * 23.79114 * 15 13 12 28 28 H 1.09001 * 110.37041 * 159.34563 * 17 16 15 29 29 H 1.09002 * 110.36949 * 281.56981 * 17 16 15 30 30 H 1.08994 * 109.47343 * 60.00430 * 20 18 13 31 31 H 1.09002 * 109.46895 * 180.02562 * 20 18 13 32 32 H 1.08998 * 109.47317 * 299.99643 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 1 2.3520 1.2266 2.0191 15 6 0.7327 0.2423 3.0980 16 8 1.0887 0.3433 4.4940 17 6 2.2290 -0.5274 4.6598 18 6 3.0922 -0.2935 3.3963 19 1 3.5451 -1.2275 3.0636 20 6 4.1692 0.7590 3.6670 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7089 1.1613 -3.4844 25 1 1.4495 -1.4979 1.4101 26 1 0.1417 1.1062 2.7937 27 1 0.1818 -0.6797 2.9126 28 1 2.7875 -0.2548 5.5553 29 1 1.9074 -1.5673 4.7159 30 1 3.7017 1.6688 4.0433 31 1 4.8716 0.3777 4.4082 32 1 4.7019 0.9799 2.7421 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699833866.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:20 Heat of formation + Delta-G solvation = -53.583310 kcal Electronic energy + Delta-G solvation = -13285.267121 eV Core-core repulsion = 11052.449606 eV Total energy + Delta-G solvation = -2232.817515 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.38568 -35.62281 -33.12976 -31.97411 -28.97976 -26.79680 -25.79062 -24.99622 -21.89188 -20.33002 -19.88629 -16.55103 -15.86397 -15.67027 -14.84798 -14.66021 -13.73864 -13.41307 -13.13351 -12.52043 -12.43195 -12.08073 -11.87799 -11.28957 -11.14455 -10.88414 -10.69418 -10.57594 -10.48261 -10.38598 -10.15999 -9.82647 -9.48300 -8.97249 -8.37093 -7.31633 -5.99916 -4.03459 3.33562 3.37598 3.40803 4.24025 4.43714 4.91965 5.11077 5.12645 5.31604 5.43685 5.51562 5.60349 5.73377 5.92310 5.97404 6.05288 6.18443 6.30439 6.38287 6.53816 6.66732 6.81869 7.05174 7.07242 7.33911 7.71811 7.86156 8.24668 8.47841 8.58145 9.03183 9.61893 11.07084 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.056916 B = 0.008644 C = 0.008029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.838879 B = 3238.520493 C = 3486.434043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.034 0.966 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.672 5.672 13 C 0.064 3.936 14 H 0.086 0.914 15 C 0.018 3.982 16 O -0.383 6.383 17 C 0.046 3.954 18 C -0.121 4.121 19 H 0.092 0.908 20 C -0.137 4.137 21 H 0.089 0.911 22 H 0.008 0.992 23 H 0.027 0.973 24 H 0.260 0.740 25 H 0.327 0.673 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.963 -1.471 10.163 10.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.103 3.897 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.301 5.301 13 C -0.048 4.048 14 H 0.104 0.896 15 C -0.060 4.060 16 O -0.302 6.302 17 C -0.031 4.031 18 C -0.140 4.140 19 H 0.110 0.890 20 C -0.194 4.194 21 H 0.107 0.893 22 H 0.027 0.973 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.144 0.856 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.451 -1.138 10.001 10.359 hybrid contribution -0.683 -0.454 -0.875 1.199 sum 1.768 -1.592 9.126 9.431 Atomic orbital electron populations 1.22536 1.00605 0.99240 1.00734 1.19259 0.89702 0.94353 0.86414 0.94811 1.21109 1.30347 1.12499 0.89607 0.92002 1.24951 0.95318 0.95203 0.99053 1.69872 1.37221 1.23126 1.23487 0.86559 0.79179 0.79583 0.82037 1.20387 1.21447 1.20298 1.60868 1.57766 1.08458 1.03031 1.23042 0.92174 0.97996 0.91632 0.89598 1.24461 0.98620 1.01696 0.81258 1.89054 1.48219 1.66169 1.26718 1.23542 0.87131 0.93970 0.98428 1.22603 0.96402 1.00517 0.94504 0.88958 1.21742 0.97777 0.98379 1.01534 0.89257 0.97289 0.95362 0.92986 0.85560 0.89413 0.92519 0.89727 0.92786 0.92790 0.93088 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 8.75 37.16 0.32 -3.72 16 2 C 0.21 5.19 2.57 -68.86 -0.18 5.01 16 3 H 0.03 0.92 7.45 -51.93 -0.39 0.53 16 4 C -0.50 -13.63 8.84 -34.44 -0.30 -13.93 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.55 11.32 55.43 0.63 -24.92 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 N -0.67 -13.90 6.00 -99.31 -0.60 -14.49 16 13 C 0.06 1.13 3.06 -66.14 -0.20 0.93 16 14 H 0.09 1.65 7.07 -51.93 -0.37 1.29 16 15 C 0.02 0.31 5.80 37.94 0.22 0.53 16 16 O -0.38 -6.35 11.65 -35.23 -0.41 -6.76 16 17 C 0.05 0.64 7.20 38.10 0.27 0.91 16 18 C -0.12 -1.81 3.52 -88.89 -0.31 -2.12 16 19 H 0.09 1.41 7.97 -51.93 -0.41 1.00 16 20 C -0.14 -1.84 8.96 37.16 0.33 -1.51 16 21 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 22 H 0.01 0.17 6.01 -51.93 -0.31 -0.14 16 23 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.33 6.44 7.87 -39.29 -0.31 6.13 16 26 H 0.09 1.49 7.41 -51.93 -0.38 1.11 16 27 H 0.06 0.94 7.58 -51.93 -0.39 0.55 16 28 H 0.08 1.00 7.88 -51.93 -0.41 0.59 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 255.94 15.07 3.86 3.86 Total: -1.00 -28.18 255.94 -6.43 -34.62 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -4.95 Total: 3.76 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 0.06 Total: -12.47 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.03 Total: -39.42 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.41 Total: -6.76 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.18 -6.43 -34.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699833866.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.968 kcal (2) G-P(sol) polarization free energy of solvation -28.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds