Wall clock time and date at job start Mon Mar 30 2020 01:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46774 * 2 1 4 4 N 1.46506 * 109.46892 * 180.02562 * 3 2 1 5 5 C 1.36936 * 120.00072 * 91.12307 * 4 3 2 6 6 H 1.08002 * 119.99409 * 217.34099 * 5 4 3 7 7 C 1.38812 * 120.00287 * 37.33778 * 5 4 3 8 8 N 1.31619 * 119.99440 * 21.21336 * 7 5 4 9 9 Si 1.86799 * 119.99838 * 201.21278 * 7 5 4 10 10 H 1.48495 * 109.47321 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47076 * 120.00295 * 9 7 5 12 12 H 1.48506 * 109.46837 * 239.99970 * 9 7 5 13 13 C 1.46504 * 119.99565 * 271.12040 * 4 3 2 14 14 H 1.08998 * 112.84876 * 12.54061 * 13 4 3 15 15 C 1.53782 * 113.61308 * 241.34148 * 13 4 3 16 16 C 1.53775 * 87.08350 * 270.88944 * 15 13 4 17 17 C 1.53778 * 113.61180 * 143.84817 * 13 4 3 18 18 H 1.08996 * 113.61803 * 334.56769 * 17 13 4 19 19 O 1.42899 * 113.61656 * 203.66092 * 17 13 4 20 20 H 1.09000 * 109.46848 * 299.99286 * 1 2 3 21 21 H 1.09001 * 109.47451 * 59.99654 * 1 2 3 22 22 H 1.09006 * 109.46829 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46848 * 240.00714 * 2 1 3 24 24 H 1.09001 * 109.47451 * 120.00346 * 2 1 3 25 25 H 1.09001 * 109.47414 * 300.00368 * 3 2 1 26 26 H 1.09000 * 109.47370 * 60.00791 * 3 2 1 27 27 H 0.97004 * 119.99093 * 179.97438 * 8 7 5 28 28 H 1.09004 * 113.61610 * 25.43920 * 15 13 4 29 29 H 1.09002 * 113.61174 * 156.33422 * 15 13 4 30 30 H 1.08991 * 113.61773 * 89.11611 * 16 15 13 31 31 H 1.09006 * 113.61211 * 219.93983 * 16 15 13 32 32 H 0.96693 * 114.00392 * 179.97438 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1892 1.4660 -1.1866 6 1 5.1031 0.9006 -1.2939 7 6 3.7081 2.2162 -2.2508 8 7 2.8709 3.2079 -2.0314 9 14 4.2488 1.8183 -3.9940 10 1 5.1868 0.6674 -3.9707 11 1 3.0602 1.4724 -4.8141 12 1 4.9297 2.9995 -4.5827 13 6 4.2379 1.4176 1.2676 14 1 3.6007 1.1826 2.1202 15 6 5.1312 2.6499 1.4872 16 6 6.2455 1.8730 0.7665 17 6 5.5312 0.5872 1.2154 18 1 5.5185 -0.1934 0.4548 19 8 5.9582 0.1116 2.4934 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5137 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.6765 1.9564 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 2.5350 3.7324 -2.7751 28 1 4.7955 3.5346 0.9461 29 1 5.3474 2.8511 2.5365 30 1 6.2490 2.0161 -0.3140 31 1 7.2304 2.0060 1.2143 32 1 6.7709 -0.4117 2.4670 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704104195.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:19 Heat of formation + Delta-G solvation = -32.848691 kcal Electronic energy + Delta-G solvation = -13564.044390 eV Core-core repulsion = 11332.125995 eV Total energy + Delta-G solvation = -2231.918395 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.44545 -37.19896 -35.19866 -34.06824 -31.80878 -27.60200 -26.49734 -25.61692 -23.79432 -21.95292 -20.21658 -18.59165 -17.80464 -16.93583 -16.12803 -16.00871 -15.49439 -14.84258 -14.75130 -14.52464 -13.66780 -13.31682 -13.01008 -12.97602 -12.79753 -12.51533 -12.24559 -12.19635 -11.96757 -11.74080 -11.40640 -11.27911 -10.79394 -10.55526 -10.40303 -8.54240 -7.81083 -5.42568 1.44622 1.48879 1.57464 2.48889 3.09497 3.26729 3.85044 3.92559 4.13684 4.29152 4.32244 4.36764 4.53746 4.69356 4.86476 4.86802 4.97032 5.08277 5.12418 5.25411 5.31820 5.37554 5.42803 5.57090 5.66149 5.74593 5.88131 6.49445 6.99040 7.18099 7.86085 8.40129 9.16248 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.023855 B = 0.016300 C = 0.011389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.497879 B = 1717.371795 C = 2457.842068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.148 3.852 4 N -0.577 5.577 5 C -0.254 4.254 6 H 0.066 0.934 7 C -0.035 4.035 8 N -0.917 5.917 9 Si 0.951 3.049 10 H -0.265 1.265 11 H -0.291 1.291 12 H -0.293 1.293 13 C 0.155 3.845 14 H 0.061 0.939 15 C -0.152 4.152 16 C -0.151 4.151 17 C 0.077 3.923 18 H 0.056 0.944 19 O -0.561 6.561 20 H 0.056 0.944 21 H 0.044 0.956 22 H 0.065 0.935 23 H 0.040 0.960 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.021 0.979 27 H 0.250 0.750 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 -5.626 4.521 7.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.022 3.978 4 N -0.296 5.296 5 C -0.384 4.384 6 H 0.083 0.917 7 C -0.232 4.232 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.190 1.190 11 H -0.217 1.217 12 H -0.220 1.220 13 C 0.046 3.954 14 H 0.079 0.921 15 C -0.192 4.192 16 C -0.189 4.189 17 C 0.016 3.984 18 H 0.074 0.926 19 O -0.368 6.368 20 H 0.076 0.924 21 H 0.063 0.937 22 H 0.084 0.916 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 1.559 -5.204 4.605 7.122 hybrid contribution 0.649 -0.012 -1.250 1.409 sum 2.208 -5.216 3.354 6.583 Atomic orbital electron populations 1.21637 0.94853 1.01711 1.01386 1.21936 0.96001 0.98911 1.00083 1.20952 0.82559 0.94129 1.00127 1.43764 1.01320 1.84364 1.00190 1.19220 1.08236 1.21692 0.89294 0.91672 1.25819 1.00311 0.94950 1.02153 1.70143 1.36389 1.18745 1.30846 0.85469 0.77643 0.77708 0.81237 1.18966 1.21731 1.22008 1.21448 0.91369 0.93793 0.88773 0.92066 1.23311 0.98744 0.98247 0.98918 1.23394 0.97177 0.97188 1.01112 1.23105 0.96903 0.94126 0.84256 0.92617 1.86339 1.47692 1.73689 1.29127 0.92448 0.93726 0.91618 0.94141 0.93425 0.91465 0.96011 0.94043 0.94546 0.90223 0.90030 0.91020 0.75751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 9.91 71.98 0.71 -3.74 16 2 C -0.13 -5.16 6.26 30.59 0.19 -4.97 16 3 C 0.15 7.01 5.29 86.38 0.46 7.47 16 4 N -0.58 -28.49 2.66 -675.10 -1.80 -30.29 16 5 C -0.25 -13.32 7.19 84.03 0.60 -12.72 16 6 H 0.07 3.36 5.81 -2.91 -0.02 3.34 16 7 C -0.04 -1.89 4.95 84.86 0.42 -1.47 16 8 N -0.92 -52.82 11.46 21.65 0.25 -52.58 16 9 Si 0.95 43.61 29.60 68.60 2.03 45.64 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 13 C 0.15 6.78 4.47 45.52 0.20 6.99 16 14 H 0.06 2.64 8.08 -2.39 -0.02 2.62 16 15 C -0.15 -6.40 7.67 31.12 0.24 -6.16 16 16 C -0.15 -5.84 7.29 31.12 0.23 -5.61 16 17 C 0.08 2.92 4.51 31.12 0.14 3.06 16 18 H 0.06 2.20 7.36 -2.39 -0.02 2.19 16 19 O -0.56 -17.97 13.59 -148.98 -2.02 -20.00 16 20 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 21 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 23 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.07 3.63 5.50 -2.39 -0.01 3.62 16 26 H 0.02 1.00 8.08 -2.39 -0.02 0.98 16 27 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 28 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.08 3.57 5.83 -2.39 -0.01 3.55 16 31 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.39 8.35 9.12 -74.06 -0.68 7.68 16 Total: -1.00 -60.15 259.40 2.07 -58.08 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.42 Total: 16.29 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 3.20 Total: -17.15 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -1.55 Total: -82.87 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -2.02 Total: -20.00 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -60.15 2.07 -58.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704104195.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.234 kcal (2) G-P(sol) polarization free energy of solvation -60.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds