Wall clock time and date at job start Mon Mar 30 2020 02:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46570 * 2 1 4 4 N 1.46894 * 109.47088 * 240.00072 * 2 1 3 5 5 C 1.46901 * 111.00115 * 84.99953 * 4 2 1 6 6 C 1.50701 * 109.47070 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99945 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99890 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99912 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99947 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.46948 * 89.99739 * 10 8 6 12 12 H 1.48497 * 109.46717 * 209.99281 * 10 8 6 13 13 H 1.48499 * 109.47053 * 329.99211 * 10 8 6 14 14 C 1.52997 * 109.47076 * 119.99680 * 2 1 3 15 15 C 1.52999 * 115.54750 * 85.58778 * 14 2 1 16 16 O 1.42903 * 109.47256 * 179.91461 * 15 14 2 17 17 C 1.53000 * 117.52093 * 231.28484 * 14 2 1 18 18 C 1.52997 * 60.00034 * 107.48451 * 17 14 2 19 19 H 1.08997 * 109.47524 * 60.00481 * 1 2 3 20 20 H 1.09002 * 109.47019 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47715 * 300.00110 * 1 2 3 22 22 H 1.00906 * 110.99864 * 208.95164 * 4 2 1 23 23 H 1.09000 * 109.47156 * 299.99623 * 5 4 2 24 24 H 1.09006 * 109.47055 * 59.99748 * 5 4 2 25 25 H 0.96997 * 119.99456 * 180.02562 * 9 8 6 26 26 H 1.08997 * 109.47286 * 59.91021 * 15 14 2 27 27 H 1.09008 * 109.47201 * 299.90802 * 15 14 2 28 28 H 0.96700 * 114.00311 * 180.02562 * 16 15 14 29 29 H 1.08993 * 117.50255 * 214.97179 * 17 14 2 30 30 H 1.08998 * 117.49512 * 359.97438 * 17 14 2 31 31 H 1.09001 * 117.49942 * 252.51154 * 18 17 14 32 32 H 1.08993 * 117.51940 * 107.48370 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3469 6 6 2.5885 -0.5215 -3.5557 7 1 2.8381 -1.5695 -3.4793 8 6 2.7318 0.1354 -4.7594 9 7 3.1730 -0.5142 -5.8145 10 14 2.2995 1.9478 -4.8917 11 1 3.4998 2.7667 -4.5853 12 1 1.8352 2.2465 -6.2703 13 1 1.2197 2.2709 -3.9248 14 6 2.0400 -0.7212 1.2493 15 6 2.1598 -2.2418 1.1306 16 8 2.6463 -2.7789 2.3622 17 6 3.0757 0.0039 2.1108 18 6 1.6374 -0.1483 2.6096 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 2.9173 -1.1204 -1.0287 23 1 1.0870 0.6163 -2.5525 24 1 2.7588 1.0463 -2.1182 25 1 3.2742 -0.0519 -6.6612 26 1 2.8530 -2.4901 0.3269 27 1 1.1807 -2.6674 0.9103 28 1 2.7476 -3.7406 2.3593 29 1 3.8424 -0.6023 2.5931 30 1 3.3944 0.9949 1.7875 31 1 1.0095 0.7427 2.6146 32 1 1.4574 -0.8547 3.4199 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710197277.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:04 Heat of formation + Delta-G solvation = -53.425664 kcal Electronic energy + Delta-G solvation = -13020.006993 eV Core-core repulsion = 10787.196313 eV Total energy + Delta-G solvation = -2232.810679 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.18629 -37.21932 -36.01044 -34.46583 -31.38521 -28.71978 -27.75820 -24.34375 -23.15950 -22.63272 -19.88922 -18.87241 -18.32870 -16.93326 -16.60400 -15.84545 -15.61648 -15.27413 -15.00733 -14.46164 -14.10124 -13.80564 -13.28150 -13.12239 -12.87291 -12.57571 -12.43581 -12.15987 -11.82705 -11.53997 -11.52932 -11.35589 -11.08378 -10.82598 -10.32504 -9.18162 -8.31486 -6.35623 1.32970 1.34974 1.46234 2.32554 2.81400 3.02575 3.22669 3.45493 3.80549 3.95761 4.07209 4.35939 4.46300 4.51625 4.75165 4.78722 4.83219 4.87695 4.92382 5.00592 5.05322 5.14033 5.20546 5.33808 5.37327 5.56168 5.96829 6.54665 6.64534 6.74806 6.91813 7.29341 8.85218 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.049210 B = 0.008407 C = 0.007822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.855342 B = 3329.713104 C = 3578.870859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.119 3.881 3 H 0.035 0.965 4 N -0.679 5.679 5 C 0.176 3.824 6 C -0.527 4.527 7 H 0.038 0.962 8 C 0.008 3.992 9 N -0.947 5.947 10 Si 0.949 3.051 11 H -0.267 1.267 12 H -0.279 1.279 13 H -0.251 1.251 14 C -0.142 4.142 15 C 0.125 3.875 16 O -0.584 6.584 17 C -0.170 4.170 18 C -0.142 4.142 19 H 0.040 0.960 20 H 0.057 0.943 21 H 0.075 0.925 22 H 0.335 0.665 23 H 0.026 0.974 24 H -0.018 1.018 25 H 0.268 0.732 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.397 0.603 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.588 1.330 16.278 16.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.009 3.991 3 H 0.053 0.947 4 N -0.310 5.310 5 C 0.047 3.953 6 C -0.565 4.565 7 H 0.057 0.943 8 C -0.189 4.189 9 N -0.587 5.587 10 Si 0.772 3.228 11 H -0.192 1.192 12 H -0.205 1.205 13 H -0.174 1.174 14 C -0.142 4.142 15 C 0.047 3.953 16 O -0.392 6.392 17 C -0.207 4.207 18 C -0.179 4.179 19 H 0.059 0.941 20 H 0.076 0.924 21 H 0.094 0.906 22 H 0.154 0.846 23 H 0.044 0.956 24 H -0.001 1.001 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.246 0.754 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.181 1.722 16.091 16.714 hybrid contribution 0.874 0.403 -0.725 1.205 sum -3.307 2.125 15.367 15.861 Atomic orbital electron populations 1.21733 0.93774 1.02171 1.01186 1.21069 0.96382 0.94397 0.87242 0.94725 1.60565 1.33065 1.33594 1.03787 1.19785 0.95210 0.91075 0.89223 1.21333 1.43321 0.97379 0.94461 0.94319 1.25865 0.94528 1.03419 0.95113 1.70050 1.48071 1.38886 1.01707 0.85685 0.79687 0.79351 0.78031 1.19238 1.20495 1.17442 1.21567 1.06255 0.93967 0.92448 1.21215 0.97911 0.90929 0.85268 1.86330 1.88887 1.28044 1.35948 1.23037 0.93369 1.00960 1.03359 1.22917 0.97137 1.02528 0.95325 0.94053 0.92374 0.90599 0.84643 0.95556 1.00079 0.92342 0.93705 0.92878 0.75366 0.88499 0.89226 0.87971 0.87944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.26 71.98 0.67 -3.22 16 2 C 0.12 3.90 2.71 44.92 0.12 4.02 16 3 H 0.03 1.18 7.56 -2.39 -0.02 1.16 16 4 N -0.68 -27.77 5.76 -495.59 -2.85 -30.62 16 5 C 0.18 8.50 4.31 85.56 0.37 8.87 16 6 C -0.53 -30.83 9.87 25.60 0.25 -30.58 16 7 H 0.04 2.50 8.06 -2.91 -0.02 2.48 16 8 C 0.01 0.49 5.47 84.65 0.46 0.95 16 9 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 10 Si 0.95 44.46 27.47 68.60 1.88 46.35 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 14 C -0.14 -3.95 1.81 -52.18 -0.09 -4.05 16 15 C 0.12 3.34 6.61 71.98 0.48 3.82 16 16 O -0.58 -13.39 11.91 -148.98 -1.77 -15.17 16 17 C -0.17 -4.39 9.58 30.59 0.29 -4.09 16 18 C -0.14 -3.31 9.14 30.59 0.28 -3.03 16 19 H 0.04 1.33 7.45 -2.39 -0.02 1.31 16 20 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.08 1.81 7.29 -2.39 -0.02 1.79 16 22 H 0.34 13.69 6.98 -89.69 -0.63 13.06 16 23 H 0.03 1.29 6.49 -2.39 -0.02 1.27 16 24 H -0.02 -0.88 7.48 -2.38 -0.02 -0.90 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.04 1.32 6.76 -2.39 -0.02 1.30 16 27 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.40 5.59 9.12 -74.06 -0.68 4.91 16 29 H 0.10 2.51 7.66 -2.39 -0.02 2.49 16 30 H 0.09 2.27 8.05 -2.39 -0.02 2.25 16 31 H 0.10 2.11 7.61 -2.39 -0.02 2.09 16 32 H 0.10 2.32 7.66 -2.39 -0.02 2.30 16 Total: -1.00 -66.33 261.38 0.14 -66.20 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -0.25 Total: 19.78 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 2.83 Total: -27.30 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -2.55 Total: -89.85 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -1.77 Total: -15.17 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.35 kcal Total: -66.33 0.14 -66.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710197277.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.770 kcal (2) G-P(sol) polarization free energy of solvation -66.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds