Wall clock time and date at job start Mon Mar 30 2020 02:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47132 * 2 1 4 4 O 1.42898 * 109.47225 * 120.00009 * 2 1 3 5 5 C 1.52999 * 109.47165 * 240.00489 * 2 1 3 6 6 C 1.53516 * 114.17022 * 180.02562 * 5 2 1 7 7 N 1.47480 * 87.93184 * 139.85878 * 6 5 2 8 8 C 1.46896 * 110.99824 * 221.29093 * 7 6 5 9 9 C 1.52996 * 109.47256 * 169.99800 * 8 7 6 10 10 C 1.50702 * 109.47159 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 C 1.47474 * 87.83538 * 332.98757 * 7 6 5 19 19 H 1.08996 * 109.47464 * 300.00103 * 1 2 3 20 20 H 1.09007 * 109.47163 * 60.00205 * 1 2 3 21 21 H 1.08994 * 109.47226 * 179.97438 * 1 2 3 22 22 H 0.96698 * 113.99867 * 300.00399 * 4 2 1 23 23 H 1.08998 * 113.25892 * 47.04435 * 5 2 1 24 24 H 1.08995 * 113.47865 * 25.08641 * 6 5 2 25 25 H 1.09008 * 113.52710 * 254.63114 * 6 5 2 26 26 H 1.09004 * 109.46774 * 50.00000 * 8 7 6 27 27 H 1.09000 * 109.47723 * 290.00388 * 8 7 6 28 28 H 1.09004 * 109.47066 * 60.00378 * 9 8 7 29 29 H 1.08994 * 109.47405 * 300.00209 * 9 8 7 30 30 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 31 31 H 1.08999 * 113.47567 * 141.77925 * 18 7 6 32 32 H 1.09003 * 113.47787 * 272.24530 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7211 -1.2493 6 6 3.5700 -0.7845 -1.3579 7 7 3.4242 -2.1665 -1.8519 8 6 4.4437 -3.0458 -1.2642 9 6 4.1145 -4.5023 -1.5975 10 6 5.1600 -5.4044 -0.9941 11 1 5.9773 -4.9813 -0.4289 12 6 5.0697 -6.7705 -1.1582 13 7 4.0743 -7.2857 -1.8460 14 14 6.3614 -7.8891 -0.4037 15 1 6.3760 -7.7051 1.0698 16 1 6.0392 -9.3032 -0.7232 17 1 7.6963 -7.5486 -0.9583 18 6 2.1602 -2.2439 -1.0962 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 1.7209 -0.2701 1.9979 23 1 1.5401 -0.4030 -2.1641 24 1 4.0767 -0.7186 -0.3952 25 1 3.9823 -0.0997 -2.0990 26 1 4.4565 -2.9147 -0.1821 27 1 5.4219 -2.7918 -1.6725 28 1 4.1017 -4.6334 -2.6796 29 1 3.1364 -4.7564 -1.1891 30 1 4.0110 -8.2468 -1.9618 31 1 1.3768 -2.7957 -1.6157 32 1 2.2907 -2.5675 -0.0635 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719853711.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:30 Heat of formation + Delta-G solvation = -28.961363 kcal Electronic energy + Delta-G solvation = -12889.381427 eV Core-core repulsion = 10657.631599 eV Total energy + Delta-G solvation = -2231.749828 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.91712 -36.73612 -33.40593 -31.70765 -30.19760 -26.99035 -25.47264 -24.11358 -21.94425 -19.96813 -19.30042 -17.14732 -16.34366 -15.29407 -15.14632 -14.65835 -14.34830 -13.60559 -13.29324 -12.67764 -12.55436 -12.14015 -12.08198 -11.71860 -11.24510 -11.03886 -10.80681 -10.58536 -10.37467 -10.22297 -9.79485 -9.67519 -9.21680 -9.05144 -8.30297 -8.14881 -5.93577 -3.95971 3.37495 3.41172 3.44044 4.20263 4.49050 4.55992 4.68221 5.04422 5.06011 5.31104 5.41945 5.46706 5.67776 5.76270 5.92677 5.95495 6.01922 6.10997 6.19189 6.38021 6.39836 6.64297 6.93776 7.21380 7.58078 7.68825 7.81295 7.95916 8.14244 8.49863 9.10997 9.67134 11.17938 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.060564 B = 0.006822 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.208742 B = 4103.573977 C = 4136.841097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.111 3.889 3 H 0.054 0.946 4 O -0.560 6.560 5 C -0.122 4.122 6 C 0.004 3.996 7 N -0.476 5.476 8 C 0.030 3.970 9 C 0.030 3.970 10 C -0.521 4.521 11 H 0.053 0.947 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.020 3.980 19 H 0.053 0.947 20 H 0.064 0.936 21 H 0.066 0.934 22 H 0.373 0.627 23 H 0.106 0.894 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.030 0.970 27 H 0.060 0.940 28 H 0.022 0.978 29 H 0.015 0.985 30 H 0.260 0.740 31 H 0.073 0.927 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 14.755 4.117 16.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.051 3.949 3 H 0.072 0.928 4 O -0.366 6.366 5 C -0.140 4.140 6 C -0.125 4.125 7 N -0.198 5.198 8 C -0.098 4.098 9 C -0.008 4.008 10 C -0.560 4.560 11 H 0.071 0.929 12 C -0.144 4.144 13 N -0.534 5.534 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.109 4.109 19 H 0.072 0.928 20 H 0.083 0.917 21 H 0.085 0.915 22 H 0.220 0.780 23 H 0.124 0.876 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.825 14.008 2.874 15.441 hybrid contribution 0.470 -0.230 1.667 1.747 sum -5.355 13.778 4.541 15.464 Atomic orbital electron populations 1.22463 0.96549 1.03063 1.01942 1.21561 0.92506 0.94627 0.86167 0.92846 1.86606 1.76917 1.57382 1.15651 1.22911 0.97067 0.97662 0.96381 1.23751 0.95067 0.94179 0.99545 1.68940 1.03983 1.01796 1.45082 1.22807 0.94410 0.96624 0.95983 1.19001 0.96712 0.87580 0.97463 1.21179 1.09906 0.91475 1.33449 0.92855 1.25005 0.95749 0.98230 0.95382 1.69974 1.30816 1.11963 1.40615 0.86646 0.82007 0.79608 0.79648 1.20293 1.21270 1.20236 1.23579 0.94658 0.93771 0.98844 0.92750 0.91706 0.91485 0.78030 0.87568 0.91330 0.90902 0.95214 0.92185 0.95931 0.96650 0.92988 0.90806 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 9.53 37.16 0.35 -1.36 16 2 C 0.11 1.25 3.65 -26.73 -0.10 1.15 16 3 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 4 O -0.56 -7.04 11.41 -35.23 -0.40 -7.44 16 5 C -0.12 -1.71 3.92 -90.09 -0.35 -2.06 16 6 C 0.00 0.06 7.19 -7.55 -0.05 0.01 16 7 N -0.48 -9.61 6.41 -244.65 -1.57 -11.18 16 8 C 0.03 0.69 4.76 -3.83 -0.02 0.67 16 9 C 0.03 0.83 5.08 -27.88 -0.14 0.69 16 10 C -0.52 -15.51 9.11 -34.44 -0.31 -15.83 16 11 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -27.89 13.29 55.43 0.74 -27.15 16 14 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 C 0.02 0.37 6.43 -7.56 -0.05 0.32 16 19 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 20 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.37 2.94 9.08 45.56 0.41 3.36 16 23 H 0.11 1.36 8.14 -51.93 -0.42 0.93 16 24 H 0.07 1.14 7.43 -51.93 -0.39 0.75 16 25 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 26 H 0.03 0.69 7.56 -51.93 -0.39 0.30 16 27 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.02 0.45 7.67 -51.93 -0.40 0.05 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.61 6.49 -51.93 -0.34 1.27 16 LS Contribution 264.66 15.07 3.99 3.99 Total: -1.00 -32.84 264.66 -7.48 -40.33 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.45 Total: -1.05 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -0.77 Total: -14.79 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: -0.83 Total: -38.33 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.40 Total: -7.44 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.84 -7.48 -40.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719853711.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.364 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds