Wall clock time and date at job start Mon Mar 30 2020 02:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47132 * 2 1 4 4 O 1.42898 * 109.47225 * 120.00009 * 2 1 3 5 5 C 1.52999 * 109.47165 * 240.00489 * 2 1 3 6 6 C 1.53516 * 114.17022 * 180.02562 * 5 2 1 7 7 N 1.47480 * 87.93184 * 139.85878 * 6 5 2 8 8 C 1.46896 * 110.99824 * 221.29093 * 7 6 5 9 9 C 1.52996 * 109.47256 * 169.99800 * 8 7 6 10 10 C 1.50702 * 109.47159 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 C 1.47474 * 87.83538 * 332.98757 * 7 6 5 19 19 H 1.08996 * 109.47464 * 300.00103 * 1 2 3 20 20 H 1.09007 * 109.47163 * 60.00205 * 1 2 3 21 21 H 1.08994 * 109.47226 * 179.97438 * 1 2 3 22 22 H 0.96698 * 113.99867 * 300.00399 * 4 2 1 23 23 H 1.08998 * 113.25892 * 47.04435 * 5 2 1 24 24 H 1.08995 * 113.47865 * 25.08641 * 6 5 2 25 25 H 1.09008 * 113.52710 * 254.63114 * 6 5 2 26 26 H 1.09004 * 109.46774 * 50.00000 * 8 7 6 27 27 H 1.09000 * 109.47723 * 290.00388 * 8 7 6 28 28 H 1.09004 * 109.47066 * 60.00378 * 9 8 7 29 29 H 1.08994 * 109.47405 * 300.00209 * 9 8 7 30 30 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 31 31 H 1.08999 * 113.47567 * 141.77925 * 18 7 6 32 32 H 1.09003 * 113.47787 * 272.24530 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7211 -1.2493 6 6 3.5700 -0.7845 -1.3579 7 7 3.4242 -2.1665 -1.8519 8 6 4.4437 -3.0458 -1.2642 9 6 4.1145 -4.5023 -1.5975 10 6 5.1600 -5.4044 -0.9941 11 1 5.9773 -4.9813 -0.4289 12 6 5.0697 -6.7705 -1.1582 13 7 4.0743 -7.2857 -1.8460 14 14 6.3614 -7.8891 -0.4037 15 1 6.3760 -7.7051 1.0698 16 1 6.0392 -9.3032 -0.7232 17 1 7.6963 -7.5486 -0.9583 18 6 2.1602 -2.2439 -1.0962 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 1.7209 -0.2701 1.9979 23 1 1.5401 -0.4030 -2.1641 24 1 4.0767 -0.7186 -0.3952 25 1 3.9823 -0.0997 -2.0990 26 1 4.4565 -2.9147 -0.1821 27 1 5.4219 -2.7918 -1.6725 28 1 4.1017 -4.6334 -2.6796 29 1 3.1364 -4.7564 -1.1891 30 1 4.0110 -8.2468 -1.9618 31 1 1.3768 -2.7957 -1.6157 32 1 2.2907 -2.5675 -0.0635 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719853711.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:30 Heat of formation + Delta-G solvation = -55.331926 kcal Electronic energy + Delta-G solvation = -12890.524940 eV Core-core repulsion = 10657.631599 eV Total energy + Delta-G solvation = -2232.893341 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.27583 -37.78727 -35.54137 -33.28930 -31.62154 -28.66423 -26.87937 -25.87894 -23.41687 -21.72428 -20.53578 -18.59926 -18.08061 -16.69181 -16.60461 -16.52337 -15.63167 -15.13157 -14.74058 -14.16676 -14.09655 -13.55228 -13.39608 -13.08035 -12.93587 -12.66947 -12.55798 -12.34628 -11.79613 -11.66770 -11.53399 -11.32602 -10.99317 -10.72163 -10.58854 -9.76421 -8.22968 -6.35973 1.37830 1.42405 1.50442 2.38695 3.09499 3.14292 3.33853 3.58348 3.88605 4.20357 4.26294 4.37256 4.47334 4.50948 4.57287 4.66722 4.77653 4.82892 4.98028 4.99720 5.07850 5.32068 5.34217 5.38143 5.47043 5.66225 5.75933 6.11358 6.27932 6.79935 7.00715 7.33351 8.89406 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.060564 B = 0.006822 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.208742 B = 4103.573977 C = 4136.841097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.112 3.888 3 H 0.080 0.920 4 O -0.588 6.588 5 C -0.099 4.099 6 C 0.006 3.994 7 N -0.498 5.498 8 C 0.048 3.952 9 C 0.039 3.961 10 C -0.550 4.550 11 H 0.060 0.940 12 C 0.000 4.000 13 N -0.933 5.933 14 Si 0.972 3.028 15 H -0.266 1.266 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.012 3.988 19 H 0.075 0.925 20 H 0.078 0.922 21 H 0.046 0.954 22 H 0.393 0.607 23 H 0.125 0.875 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.026 0.974 27 H 0.061 0.939 28 H -0.011 1.011 29 H -0.013 1.013 30 H 0.265 0.735 31 H 0.061 0.939 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.679 16.108 4.942 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.053 3.947 3 H 0.098 0.902 4 O -0.397 6.397 5 C -0.118 4.118 6 C -0.123 4.123 7 N -0.220 5.220 8 C -0.081 4.081 9 C 0.002 3.998 10 C -0.588 4.588 11 H 0.078 0.922 12 C -0.198 4.198 13 N -0.573 5.573 14 Si 0.796 3.204 15 H -0.191 1.191 16 H -0.205 1.205 17 H -0.190 1.190 18 C -0.117 4.117 19 H 0.094 0.906 20 H 0.097 0.903 21 H 0.065 0.935 22 H 0.242 0.758 23 H 0.143 0.857 24 H 0.083 0.917 25 H 0.112 0.888 26 H 0.045 0.955 27 H 0.079 0.921 28 H 0.008 0.992 29 H 0.006 0.994 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.427 15.392 3.713 16.738 hybrid contribution 0.288 -0.631 1.390 1.553 sum -5.139 14.761 5.102 16.441 Atomic orbital electron populations 1.22417 0.95031 1.02329 1.03753 1.21613 0.93605 0.95008 0.84430 0.90187 1.86557 1.77512 1.58526 1.17061 1.22919 0.95728 0.94176 0.98947 1.23815 0.96997 0.91688 0.99775 1.68898 1.03870 1.03664 1.45599 1.22450 0.95422 0.94405 0.95786 1.18818 0.95183 0.90927 0.94902 1.21595 1.10591 0.92507 1.34094 0.92178 1.26049 0.98193 1.00015 0.95560 1.70120 1.32850 1.12635 1.41672 0.85403 0.78893 0.77105 0.79039 1.19059 1.20470 1.18952 1.23564 0.93522 0.97406 0.97206 0.90598 0.90310 0.93466 0.75763 0.85718 0.91662 0.88815 0.95547 0.92100 0.99226 0.99444 0.92611 0.92050 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.86 9.53 71.98 0.69 -2.17 16 2 C 0.11 2.23 3.65 30.59 0.11 2.34 16 3 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 4 O -0.59 -13.83 11.41 -148.98 -1.70 -15.53 16 5 C -0.10 -2.61 3.92 -10.45 -0.04 -2.65 16 6 C 0.01 0.18 7.19 83.57 0.60 0.78 16 7 N -0.50 -20.29 6.41 -927.94 -5.95 -26.25 16 8 C 0.05 2.27 4.76 86.30 0.41 2.68 16 9 C 0.04 2.28 5.08 29.85 0.15 2.43 16 10 C -0.55 -33.39 9.11 25.60 0.23 -33.16 16 11 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 12 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 13 N -0.93 -59.44 13.29 21.45 0.28 -59.15 16 14 Si 0.97 45.84 29.54 68.60 2.03 47.87 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 18 C 0.01 0.45 6.43 83.57 0.54 0.99 16 19 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 20 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 21 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.39 5.39 9.08 -74.06 -0.67 4.72 16 23 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 24 H 0.07 2.07 7.43 -2.39 -0.02 2.06 16 25 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 26 H 0.03 1.25 7.56 -2.38 -0.02 1.23 16 27 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 28 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 29 H -0.01 -0.81 7.67 -2.39 -0.02 -0.82 16 30 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 31 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.06 2.53 6.49 -2.39 -0.02 2.51 16 Total: -1.00 -72.20 264.66 -1.78 -73.97 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.41 Total: 7.40 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 3.15 Total: -28.31 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -5.67 Total: -85.40 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -1.70 Total: -15.53 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -72.20 -1.78 -73.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719853711.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.641 kcal (2) G-P(sol) polarization free energy of solvation -72.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds