Wall clock time and date at job start Mon Mar 30 2020 02:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.56532 * 2 1 4 4 C 1.54354 * 109.56146 * 239.76678 * 2 1 3 5 5 C 1.46583 * 111.47648 * 163.19047 * 4 2 1 6 6 N 1.47806 * 112.40906 * 60.80791 * 5 4 2 7 7 C 1.46904 * 110.99701 * 156.12837 * 6 5 4 8 8 C 1.50699 * 109.46947 * 64.67362 * 7 6 5 9 9 H 1.08001 * 120.00217 * 4.93450 * 8 7 6 10 10 C 1.37881 * 119.99860 * 184.92535 * 8 7 6 11 11 N 1.31515 * 119.99885 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00129 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47190 * 59.99997 * 12 10 8 14 14 H 1.48503 * 109.47210 * 180.02562 * 12 10 8 15 15 H 1.48511 * 109.47061 * 300.00267 * 12 10 8 16 16 C 1.44354 * 110.29632 * 279.57568 * 6 5 4 17 17 C 1.53846 * 112.11811 * 92.43768 * 16 6 5 18 18 O 1.40310 * 109.55735 * 120.33693 * 2 1 3 19 19 H 1.08993 * 109.47478 * 180.22526 * 1 2 3 20 20 H 1.09003 * 109.46802 * 300.23287 * 1 2 3 21 21 H 1.09008 * 109.46557 * 60.22352 * 1 2 3 22 22 H 1.09000 * 109.07882 * 42.68309 * 4 2 1 23 23 H 1.09003 * 109.08509 * 283.70564 * 4 2 1 24 24 H 1.08995 * 108.89609 * 181.56345 * 5 4 2 25 25 H 1.09000 * 108.89240 * 300.05391 * 5 4 2 26 26 H 1.09000 * 109.46894 * 184.67148 * 7 6 5 27 27 H 1.08998 * 109.47138 * 304.67687 * 7 6 5 28 28 H 0.96997 * 119.99752 * 179.97438 * 11 10 8 29 29 H 1.08997 * 108.95040 * 331.76372 * 16 6 5 30 30 H 1.08996 * 108.95552 * 213.11769 * 16 6 5 31 31 H 1.09000 * 108.81061 * 197.64168 * 17 16 6 32 32 H 1.09001 * 108.80950 * 79.36849 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8950 1.0270 0.0000 4 6 2.0468 -0.7323 -1.2566 5 6 3.4569 -0.4260 -1.5144 6 7 4.3365 -0.8421 -0.4018 7 6 5.7117 -1.0588 -0.8707 8 6 6.2892 0.2466 -1.3538 9 1 5.7248 1.1608 -1.2430 10 6 7.5383 0.2741 -1.9370 11 7 8.2254 -0.8391 -2.0722 12 14 8.2545 1.8922 -2.5351 13 1 8.3712 2.8342 -1.3931 14 1 9.5987 1.6528 -3.1193 15 1 7.3628 2.4761 -3.5692 16 6 4.2997 0.1367 0.6585 17 6 3.2351 -0.1966 1.7179 18 8 1.9997 -0.6678 1.1411 19 1 -0.3634 -1.0276 0.0040 20 1 -0.3633 0.5175 0.8879 21 1 -0.3633 0.5104 -0.8921 22 1 1.4526 -0.4257 -2.1174 23 1 1.9362 -1.8073 -1.1135 24 1 3.7696 -0.9407 -2.4229 25 1 3.5628 0.6483 -1.6653 26 1 6.3186 -1.4434 -0.0511 27 1 5.7074 -1.7790 -1.6888 28 1 9.1040 -0.8199 -2.4829 29 1 4.0788 1.1144 0.2302 30 1 5.2773 0.1751 1.1390 31 1 3.0300 0.6992 2.3041 32 1 3.6289 -0.9661 2.3820 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720461725.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:21 Heat of formation + Delta-G solvation = -48.292962 kcal Electronic energy + Delta-G solvation = -13456.199510 eV Core-core repulsion = 11223.611401 eV Total energy + Delta-G solvation = -2232.588109 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.05354 -35.88778 -33.22048 -32.47703 -29.07547 -28.60305 -25.64956 -23.45950 -22.52598 -20.20380 -19.60503 -16.84163 -16.11533 -15.41987 -14.76732 -14.46985 -14.26791 -13.47183 -13.14975 -12.60200 -12.37896 -12.24575 -12.08861 -11.54639 -11.11042 -10.94871 -10.84198 -10.52823 -10.30760 -10.24651 -9.95906 -9.88698 -9.54969 -8.87064 -8.46171 -7.22958 -6.05578 -4.15964 3.25378 3.30854 3.32682 4.13432 4.37149 4.95542 5.15687 5.24375 5.40828 5.47941 5.66676 5.73970 5.83898 5.89219 5.95636 6.11337 6.17960 6.30339 6.40263 6.57493 6.57556 6.73351 6.87506 7.27343 7.49982 7.85437 7.90916 8.05894 8.25234 8.34372 8.94903 9.51470 10.99067 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.055063 B = 0.009060 C = 0.008872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.386732 B = 3089.789400 C = 3155.285694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.096 3.904 3 H 0.048 0.952 4 C -0.138 4.138 5 C 0.064 3.936 6 N -0.531 5.531 7 C 0.189 3.811 8 C -0.553 4.553 9 H 0.054 0.946 10 C 0.065 3.935 11 N -0.890 5.890 12 Si 0.890 3.110 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.277 1.277 16 C 0.035 3.965 17 C 0.073 3.927 18 O -0.381 6.381 19 H 0.061 0.939 20 H 0.054 0.946 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.028 0.972 26 H 0.029 0.971 27 H 0.035 0.965 28 H 0.263 0.737 29 H 0.030 0.970 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.860 2.514 3.394 11.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.037 3.963 3 H 0.066 0.934 4 C -0.176 4.176 5 C -0.064 4.064 6 N -0.255 5.255 7 C 0.064 3.936 8 C -0.592 4.592 9 H 0.072 0.928 10 C -0.138 4.138 11 N -0.528 5.528 12 Si 0.717 3.283 13 H -0.203 1.203 14 H -0.211 1.211 15 H -0.203 1.203 16 C -0.095 4.095 17 C -0.004 4.004 18 O -0.300 6.300 19 H 0.080 0.920 20 H 0.073 0.927 21 H 0.082 0.918 22 H 0.081 0.919 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.944 1.830 3.587 11.661 hybrid contribution 1.128 1.967 -0.883 2.433 sum -9.816 3.797 2.704 10.866 Atomic orbital electron populations 1.21880 0.94638 1.02419 1.01489 1.21750 0.93309 0.95034 0.86176 0.93395 1.21316 0.96892 1.02188 0.97185 1.20852 0.92100 0.98490 0.94928 1.61774 1.12226 1.43127 1.08352 1.19883 0.81963 0.95981 0.95823 1.21772 1.02317 0.94724 1.40373 0.92776 1.24980 0.96990 0.96231 0.95576 1.69931 1.12745 1.26350 1.43801 0.86700 0.78340 0.84113 0.79118 1.20268 1.21114 1.20295 1.22223 0.98900 0.94003 0.94355 1.23110 0.83977 0.98485 0.94840 1.87319 1.39159 1.59958 1.43569 0.92020 0.92664 0.91773 0.91900 0.90922 0.91536 0.95388 0.95306 0.94733 0.92682 0.95191 0.90274 0.94236 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.50 37.16 0.35 -1.47 16 2 C 0.10 1.51 2.80 -26.02 -0.07 1.43 16 3 H 0.05 0.77 7.16 -51.93 -0.37 0.39 16 4 C -0.14 -2.28 5.14 -29.08 -0.15 -2.43 16 5 C 0.06 1.29 4.37 -6.39 -0.03 1.27 16 6 N -0.53 -11.75 4.61 -240.69 -1.11 -12.86 16 7 C 0.19 4.92 4.84 -4.97 -0.02 4.89 16 8 C -0.55 -15.20 7.84 -34.44 -0.27 -15.47 16 9 H 0.05 1.47 6.55 -52.49 -0.34 1.13 16 10 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 11 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 12 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 C 0.04 0.70 4.13 -4.75 -0.02 0.68 16 17 C 0.07 1.23 7.02 37.60 0.26 1.49 16 18 O -0.38 -6.72 9.90 -33.66 -0.33 -7.05 16 19 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 22 H 0.06 0.89 8.03 -51.93 -0.42 0.47 16 23 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.07 1.40 7.71 -51.93 -0.40 1.00 16 25 H 0.03 0.58 6.94 -51.93 -0.36 0.22 16 26 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 27 H 0.03 0.97 7.94 -51.93 -0.41 0.56 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.03 0.60 6.34 -51.93 -0.33 0.28 16 30 H 0.08 1.65 7.45 -51.93 -0.39 1.27 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 253.09 15.07 3.81 3.81 Total: -1.00 -29.30 253.09 -7.07 -36.37 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -5.11 Total: -3.31 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -0.04 Total: -7.87 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: -0.37 Total: -38.30 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.33 Total: -7.05 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.30 -7.07 -36.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720461725.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.927 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds