Wall clock time and date at job start Mon Mar 30 2020 02:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.56532 * 2 1 4 4 C 1.54354 * 109.56146 * 239.76678 * 2 1 3 5 5 C 1.46583 * 111.47648 * 163.19047 * 4 2 1 6 6 N 1.47806 * 112.40906 * 60.80791 * 5 4 2 7 7 C 1.46904 * 110.99701 * 156.12837 * 6 5 4 8 8 C 1.50699 * 109.46947 * 64.67362 * 7 6 5 9 9 H 1.08001 * 120.00217 * 4.93450 * 8 7 6 10 10 C 1.37881 * 119.99860 * 184.92535 * 8 7 6 11 11 N 1.31515 * 119.99885 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00129 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47190 * 59.99997 * 12 10 8 14 14 H 1.48503 * 109.47210 * 180.02562 * 12 10 8 15 15 H 1.48511 * 109.47061 * 300.00267 * 12 10 8 16 16 C 1.44354 * 110.29632 * 279.57568 * 6 5 4 17 17 C 1.53846 * 112.11811 * 92.43768 * 16 6 5 18 18 O 1.40310 * 109.55735 * 120.33693 * 2 1 3 19 19 H 1.08993 * 109.47478 * 180.22526 * 1 2 3 20 20 H 1.09003 * 109.46802 * 300.23287 * 1 2 3 21 21 H 1.09008 * 109.46557 * 60.22352 * 1 2 3 22 22 H 1.09000 * 109.07882 * 42.68309 * 4 2 1 23 23 H 1.09003 * 109.08509 * 283.70564 * 4 2 1 24 24 H 1.08995 * 108.89609 * 181.56345 * 5 4 2 25 25 H 1.09000 * 108.89240 * 300.05391 * 5 4 2 26 26 H 1.09000 * 109.46894 * 184.67148 * 7 6 5 27 27 H 1.08998 * 109.47138 * 304.67687 * 7 6 5 28 28 H 0.96997 * 119.99752 * 179.97438 * 11 10 8 29 29 H 1.08997 * 108.95040 * 331.76372 * 16 6 5 30 30 H 1.08996 * 108.95552 * 213.11769 * 16 6 5 31 31 H 1.09000 * 108.81061 * 197.64168 * 17 16 6 32 32 H 1.09001 * 108.80950 * 79.36849 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8950 1.0270 0.0000 4 6 2.0468 -0.7323 -1.2566 5 6 3.4569 -0.4260 -1.5144 6 7 4.3365 -0.8421 -0.4018 7 6 5.7117 -1.0588 -0.8707 8 6 6.2892 0.2466 -1.3538 9 1 5.7248 1.1608 -1.2430 10 6 7.5383 0.2741 -1.9370 11 7 8.2254 -0.8391 -2.0722 12 14 8.2545 1.8922 -2.5351 13 1 8.3712 2.8342 -1.3931 14 1 9.5987 1.6528 -3.1193 15 1 7.3628 2.4761 -3.5692 16 6 4.2997 0.1367 0.6585 17 6 3.2351 -0.1966 1.7179 18 8 1.9997 -0.6678 1.1411 19 1 -0.3634 -1.0276 0.0040 20 1 -0.3633 0.5175 0.8879 21 1 -0.3633 0.5104 -0.8921 22 1 1.4526 -0.4257 -2.1174 23 1 1.9362 -1.8073 -1.1135 24 1 3.7696 -0.9407 -2.4229 25 1 3.5628 0.6483 -1.6653 26 1 6.3186 -1.4434 -0.0511 27 1 5.7074 -1.7790 -1.6888 28 1 9.1040 -0.8199 -2.4829 29 1 4.0788 1.1144 0.2302 30 1 5.2773 0.1751 1.1390 31 1 3.0300 0.6992 2.3041 32 1 3.6289 -0.9661 2.3820 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720461725.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:20 Heat of formation + Delta-G solvation = -68.532364 kcal Electronic energy + Delta-G solvation = -13457.077156 eV Core-core repulsion = 11223.611401 eV Total energy + Delta-G solvation = -2233.465755 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.53010 -37.54114 -34.79668 -34.35111 -30.59780 -30.13897 -27.57554 -24.80868 -24.42913 -21.58258 -21.28790 -18.65881 -17.81985 -17.11514 -16.33362 -16.10412 -15.84107 -15.06757 -14.69400 -14.33681 -14.02709 -13.54599 -13.42300 -13.06531 -12.89766 -12.67402 -12.45469 -12.22565 -12.02205 -11.95547 -11.78872 -11.38005 -11.29534 -10.64774 -10.22006 -9.09353 -8.18680 -6.40322 1.35050 1.36402 1.44910 2.34213 2.82841 3.05577 3.36953 3.86448 4.09073 4.12294 4.29100 4.33858 4.54866 4.56713 4.74948 4.78667 4.93623 4.98764 5.01237 5.09257 5.16846 5.22303 5.27991 5.40872 5.43582 5.69131 5.99640 6.21459 6.52840 6.63190 6.81078 7.32162 8.83358 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.055063 B = 0.009060 C = 0.008872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.386732 B = 3089.789400 C = 3155.285694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.091 3.909 3 H 0.047 0.953 4 C -0.133 4.133 5 C 0.068 3.932 6 N -0.536 5.536 7 C 0.202 3.798 8 C -0.561 4.561 9 H 0.055 0.945 10 C 0.011 3.989 11 N -0.926 5.926 12 Si 0.960 3.040 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.270 1.270 16 C 0.037 3.963 17 C 0.079 3.921 18 O -0.394 6.394 19 H 0.062 0.938 20 H 0.064 0.936 21 H 0.085 0.915 22 H 0.093 0.907 23 H 0.063 0.937 24 H 0.047 0.953 25 H 0.020 0.980 26 H 0.004 0.996 27 H 0.005 0.995 28 H 0.266 0.734 29 H 0.027 0.973 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.258 4.033 3.541 13.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.033 3.967 3 H 0.065 0.935 4 C -0.171 4.171 5 C -0.060 4.060 6 N -0.259 5.259 7 C 0.076 3.924 8 C -0.600 4.600 9 H 0.074 0.926 10 C -0.188 4.188 11 N -0.565 5.565 12 Si 0.784 3.216 13 H -0.193 1.193 14 H -0.206 1.206 15 H -0.195 1.195 16 C -0.093 4.093 17 C 0.002 3.998 18 O -0.313 6.313 19 H 0.081 0.919 20 H 0.083 0.917 21 H 0.104 0.896 22 H 0.111 0.889 23 H 0.082 0.918 24 H 0.066 0.934 25 H 0.039 0.961 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.367 3.354 3.744 13.350 hybrid contribution 1.551 1.462 -0.929 2.325 sum -10.816 4.816 2.815 12.170 Atomic orbital electron populations 1.21846 0.91673 1.03014 1.03108 1.21940 0.95539 0.94418 0.84847 0.93513 1.21281 0.94652 1.01893 0.99285 1.20903 0.93881 0.97588 0.93578 1.61793 1.10146 1.44526 1.09483 1.19540 0.84146 0.94920 0.93817 1.21981 1.02624 0.95057 1.40329 0.92642 1.25866 0.97403 0.99901 0.95671 1.70059 1.13196 1.28660 1.44594 0.85585 0.77601 0.79570 0.78803 1.19341 1.20579 1.19494 1.22275 0.99499 0.93303 0.94243 1.23069 0.82962 1.00033 0.93711 1.87316 1.38942 1.60763 1.44276 0.91925 0.91659 0.89607 0.88902 0.91792 0.93445 0.96141 0.97749 0.97671 0.92469 0.95496 0.91898 0.91276 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.50 71.98 0.68 -2.28 16 2 C 0.09 2.63 2.80 31.05 0.09 2.71 16 3 H 0.05 1.37 7.16 -2.39 -0.02 1.35 16 4 C -0.13 -4.20 5.14 29.07 0.15 -4.05 16 5 C 0.07 2.74 4.37 84.15 0.37 3.11 16 6 N -0.54 -24.06 4.61 -915.39 -4.22 -28.28 16 7 C 0.20 10.94 4.84 85.56 0.41 11.35 16 8 C -0.56 -31.33 7.84 25.60 0.20 -31.13 16 9 H 0.06 3.03 6.55 -2.91 -0.02 3.01 16 10 C 0.01 0.64 5.46 84.66 0.46 1.10 16 11 N -0.93 -55.45 13.29 21.45 0.28 -55.17 16 12 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 14 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 C 0.04 1.44 4.13 87.06 0.36 1.80 16 17 C 0.08 2.53 7.02 72.27 0.51 3.03 16 18 O -0.39 -13.04 9.90 -143.36 -1.42 -14.46 16 19 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 20 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 22 H 0.09 2.38 8.03 -2.39 -0.02 2.36 16 23 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.05 2.04 7.71 -2.39 -0.02 2.02 16 25 H 0.02 0.84 6.94 -2.39 -0.02 0.83 16 26 H 0.00 0.26 8.08 -2.39 -0.02 0.24 16 27 H 0.01 0.30 7.94 -2.39 -0.02 0.28 16 28 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.03 1.07 6.34 -2.39 -0.02 1.05 16 30 H 0.06 2.66 7.45 -2.39 -0.02 2.64 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -62.84 253.09 0.98 -61.86 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: 1.07 Total: 4.63 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: 3.23 Total: -14.34 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -3.93 Total: -83.45 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -1.42 Total: -14.46 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -62.84 0.98 -61.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720461725.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.673 kcal (2) G-P(sol) polarization free energy of solvation -62.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds