Wall clock time and date at job start Mon Mar 30 2020 02:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 113.38302 * 2 1 4 4 C 1.53510 * 114.16687 * 133.07809 * 2 1 3 5 5 N 1.47484 * 87.93125 * 139.67227 * 4 2 1 6 6 C 1.46896 * 111.00085 * 221.29597 * 5 4 2 7 7 C 1.53002 * 109.46835 * 265.97189 * 6 5 4 8 8 H 1.09004 * 109.47503 * 60.00146 * 7 6 5 9 9 O 1.42901 * 109.47293 * 299.99465 * 7 6 5 10 10 C 1.50706 * 109.47153 * 179.97438 * 7 6 5 11 11 H 1.07998 * 119.99501 * 359.97438 * 10 7 6 12 12 C 1.37871 * 120.00436 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00481 * 179.97438 * 12 10 7 14 14 Si 1.86803 * 119.99886 * 359.72901 * 12 10 7 15 15 H 1.48502 * 109.46964 * 270.27509 * 14 12 10 16 16 H 1.48505 * 109.47036 * 30.26897 * 14 12 10 17 17 H 1.48490 * 109.47395 * 150.27411 * 14 12 10 18 18 C 1.47482 * 87.83293 * 332.98908 * 5 4 2 19 19 H 1.09005 * 113.47270 * 141.78174 * 18 5 4 20 20 C 1.53004 * 113.47231 * 272.24177 * 18 5 4 21 21 H 1.08998 * 109.47134 * 193.07537 * 1 2 3 22 22 H 1.08996 * 109.47288 * 313.08397 * 1 2 3 23 23 H 1.09005 * 109.47040 * 73.08457 * 1 2 3 24 24 H 1.08998 * 113.47733 * 24.90568 * 4 2 1 25 25 H 1.08999 * 113.47608 * 254.43901 * 4 2 1 26 26 H 1.08991 * 109.47199 * 145.97201 * 6 5 4 27 27 H 1.09001 * 109.46987 * 25.96707 * 6 5 4 28 28 H 0.96697 * 114.00059 * 300.01042 * 9 7 6 29 29 H 0.96999 * 120.00235 * 179.72806 * 13 12 10 30 30 H 1.08992 * 109.46848 * 40.50031 * 20 18 5 31 31 H 1.09003 * 109.46818 * 160.49993 * 20 18 5 32 32 H 1.08996 * 109.47120 * 280.49663 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9626 1.0005 0.0000 4 6 2.1585 -0.9566 1.0230 5 7 3.1619 -1.3059 0.0001 6 6 3.4330 -2.7496 0.0001 7 6 4.6446 -3.0409 0.8880 8 1 4.4371 -2.7102 1.9057 9 8 5.7843 -2.3423 0.3830 10 6 4.9224 -4.5221 0.8885 11 1 4.2972 -5.1890 0.3135 12 6 5.9748 -5.0259 1.6231 13 7 6.2170 -6.3185 1.6240 14 14 7.0609 -3.8715 2.6117 15 1 8.1899 -3.4082 1.7656 16 1 6.2629 -2.7008 3.0567 17 1 7.5933 -4.5877 3.7986 18 6 2.1586 -0.9566 -1.0229 19 1 2.5812 -0.4487 -1.8899 20 6 1.2469 -2.1241 -1.4061 21 1 -0.3633 -1.0010 0.2325 22 1 -0.3633 0.7019 0.7505 23 1 -0.3633 0.2990 -0.9833 24 1 1.5090 -1.7882 1.2960 25 1 2.5810 -0.4487 1.8900 26 1 3.6405 -3.0803 -1.0175 27 1 2.5637 -3.2826 0.3853 28 1 6.0271 -2.5869 -0.5205 29 1 6.9598 -6.6724 2.1377 30 1 0.9795 -2.6852 -0.5108 31 1 0.3425 -1.7393 -1.8774 32 1 1.7692 -2.7793 -2.1032 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930581554.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:35 Heat of formation + Delta-G solvation = -20.071182 kcal Electronic energy + Delta-G solvation = -13325.862191 eV Core-core repulsion = 11094.497871 eV Total energy + Delta-G solvation = -2231.364320 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.43884 -35.96975 -32.21915 -31.84828 -29.44424 -28.75413 -25.92702 -24.00799 -22.50146 -20.16977 -18.11307 -17.15247 -16.12578 -15.27877 -14.89040 -14.50034 -14.24295 -13.62325 -13.02903 -12.73856 -12.52477 -12.22961 -12.15757 -11.75260 -11.53477 -11.23350 -10.91668 -10.79167 -10.50616 -10.14470 -9.91164 -9.69140 -9.16077 -8.63328 -8.46175 -8.14696 -6.11522 -4.23296 3.48217 3.51646 3.66558 4.37133 4.51295 4.53752 4.89866 5.20351 5.33314 5.37101 5.42174 5.53165 5.67744 5.74536 5.81649 5.89455 5.92465 5.96693 6.06392 6.18652 6.22952 6.28252 6.54572 6.65546 6.81467 7.45226 7.45921 7.71196 8.30564 8.84441 9.12658 9.53003 10.98855 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.059991 B = 0.009201 C = 0.008701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.622763 B = 3042.292620 C = 3217.225426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 H 0.096 0.904 4 C 0.001 3.999 5 N -0.457 5.457 6 C 0.006 3.994 7 C 0.203 3.797 8 H 0.056 0.944 9 O -0.576 6.576 10 C -0.564 4.564 11 H 0.072 0.928 12 C 0.081 3.919 13 N -0.895 5.895 14 Si 0.916 3.084 15 H -0.278 1.278 16 H -0.268 1.268 17 H -0.307 1.307 18 C 0.022 3.978 19 H 0.085 0.915 20 C -0.160 4.160 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.358 0.642 29 H 0.265 0.735 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.928 10.561 -3.881 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.138 4.138 3 H 0.114 0.886 4 C -0.128 4.128 5 N -0.178 5.178 6 C -0.122 4.122 7 C 0.145 3.855 8 H 0.073 0.927 9 O -0.381 6.381 10 C -0.602 4.602 11 H 0.090 0.910 12 C -0.123 4.123 13 N -0.532 5.532 14 Si 0.746 3.254 15 H -0.204 1.204 16 H -0.193 1.193 17 H -0.235 1.235 18 C -0.087 4.087 19 H 0.103 0.897 20 C -0.219 4.219 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.203 0.797 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.156 10.970 -3.224 14.648 hybrid contribution -0.157 -0.481 -0.036 0.507 sum -9.313 10.489 -3.259 14.400 Atomic orbital electron populations 1.21704 0.94841 1.01785 1.01416 1.22778 0.95040 0.98771 0.97229 0.88558 1.23926 0.93982 0.98087 0.96810 1.69118 1.27355 1.18596 1.02775 1.23321 1.00288 0.87070 1.01560 1.19763 0.81646 0.91211 0.92875 0.92672 1.86370 1.49965 1.68477 1.33280 1.21577 1.15796 0.91369 1.31411 0.91030 1.25018 0.96944 0.95019 0.95324 1.69963 1.29774 1.12350 1.41120 0.86197 0.80811 0.80092 0.78268 1.20416 1.19264 1.23500 1.23297 0.92755 0.95827 0.96856 0.89652 1.22072 0.99556 0.98268 1.01979 0.92499 0.92723 0.92536 0.91574 0.90407 0.91473 0.93612 0.79661 0.92557 0.92099 0.92080 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.62 37.16 0.32 -1.11 16 2 C -0.12 -1.52 4.65 -90.09 -0.42 -1.94 16 3 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.00 0.02 6.98 -7.55 -0.05 -0.03 16 5 N -0.46 -8.21 6.20 -236.47 -1.47 -9.68 16 6 C 0.01 0.12 3.51 -3.83 -0.01 0.11 16 7 C 0.20 4.98 2.58 -27.88 -0.07 4.91 16 8 H 0.06 1.44 7.21 -51.93 -0.37 1.06 16 9 O -0.58 -13.98 10.88 -35.23 -0.38 -14.37 16 10 C -0.56 -16.01 9.34 -34.44 -0.32 -16.33 16 11 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 12 C 0.08 2.39 5.47 -17.82 -0.10 2.30 16 13 N -0.89 -27.63 13.96 55.43 0.77 -26.86 16 14 Si 0.92 24.01 26.17 -169.99 -4.45 19.56 16 15 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.27 -7.03 6.55 56.52 0.37 -6.66 16 17 H -0.31 -7.91 7.11 56.52 0.40 -7.51 16 18 C 0.02 0.32 4.68 -71.44 -0.33 -0.01 16 19 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 20 C -0.16 -2.08 7.11 37.16 0.26 -1.82 16 21 H 0.06 0.59 7.09 -51.93 -0.37 0.22 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 24 H 0.07 1.01 6.43 -51.93 -0.33 0.68 16 25 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.07 1.35 7.47 -51.93 -0.39 0.96 16 27 H 0.05 0.92 6.01 -51.93 -0.31 0.60 16 28 H 0.36 7.74 9.04 45.56 0.41 8.15 16 29 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 30 H 0.06 0.84 5.63 -51.93 -0.29 0.55 16 31 H 0.06 0.66 7.49 -51.93 -0.39 0.27 16 32 H 0.06 0.83 7.65 -51.93 -0.40 0.43 16 LS Contribution 251.88 15.07 3.80 3.80 Total: -1.00 -31.41 251.88 -6.59 -38.01 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -4.14 Total: 3.47 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -0.73 Total: -13.94 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.69 Total: -36.54 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.38 Total: -14.37 kcal Atomic # 14 Polarization: 24.01 SS G_CDS: -4.45 Total: 19.56 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.41 -6.59 -38.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930581554.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.936 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds