Wall clock time and date at job start Mon Mar 30 2020 02:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 113.38302 * 2 1 4 4 C 1.53510 * 114.16687 * 133.07809 * 2 1 3 5 5 N 1.47484 * 87.93125 * 139.67227 * 4 2 1 6 6 C 1.46896 * 111.00085 * 221.29597 * 5 4 2 7 7 C 1.53002 * 109.46835 * 265.97189 * 6 5 4 8 8 H 1.09004 * 109.47503 * 60.00146 * 7 6 5 9 9 O 1.42901 * 109.47293 * 299.99465 * 7 6 5 10 10 C 1.50706 * 109.47153 * 179.97438 * 7 6 5 11 11 H 1.07998 * 119.99501 * 359.97438 * 10 7 6 12 12 C 1.37871 * 120.00436 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00481 * 179.97438 * 12 10 7 14 14 Si 1.86803 * 119.99886 * 359.72901 * 12 10 7 15 15 H 1.48502 * 109.46964 * 270.27509 * 14 12 10 16 16 H 1.48505 * 109.47036 * 30.26897 * 14 12 10 17 17 H 1.48490 * 109.47395 * 150.27411 * 14 12 10 18 18 C 1.47482 * 87.83293 * 332.98908 * 5 4 2 19 19 H 1.09005 * 113.47270 * 141.78174 * 18 5 4 20 20 C 1.53004 * 113.47231 * 272.24177 * 18 5 4 21 21 H 1.08998 * 109.47134 * 193.07537 * 1 2 3 22 22 H 1.08996 * 109.47288 * 313.08397 * 1 2 3 23 23 H 1.09005 * 109.47040 * 73.08457 * 1 2 3 24 24 H 1.08998 * 113.47733 * 24.90568 * 4 2 1 25 25 H 1.08999 * 113.47608 * 254.43901 * 4 2 1 26 26 H 1.08991 * 109.47199 * 145.97201 * 6 5 4 27 27 H 1.09001 * 109.46987 * 25.96707 * 6 5 4 28 28 H 0.96697 * 114.00059 * 300.01042 * 9 7 6 29 29 H 0.96999 * 120.00235 * 179.72806 * 13 12 10 30 30 H 1.08992 * 109.46848 * 40.50031 * 20 18 5 31 31 H 1.09003 * 109.46818 * 160.49993 * 20 18 5 32 32 H 1.08996 * 109.47120 * 280.49663 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9626 1.0005 0.0000 4 6 2.1585 -0.9566 1.0230 5 7 3.1619 -1.3059 0.0001 6 6 3.4330 -2.7496 0.0001 7 6 4.6446 -3.0409 0.8880 8 1 4.4371 -2.7102 1.9057 9 8 5.7843 -2.3423 0.3830 10 6 4.9224 -4.5221 0.8885 11 1 4.2972 -5.1890 0.3135 12 6 5.9748 -5.0259 1.6231 13 7 6.2170 -6.3185 1.6240 14 14 7.0609 -3.8715 2.6117 15 1 8.1899 -3.4082 1.7656 16 1 6.2629 -2.7008 3.0567 17 1 7.5933 -4.5877 3.7986 18 6 2.1586 -0.9566 -1.0229 19 1 2.5812 -0.4487 -1.8899 20 6 1.2469 -2.1241 -1.4061 21 1 -0.3633 -1.0010 0.2325 22 1 -0.3633 0.7019 0.7505 23 1 -0.3633 0.2990 -0.9833 24 1 1.5090 -1.7882 1.2960 25 1 2.5810 -0.4487 1.8900 26 1 3.6405 -3.0803 -1.0175 27 1 2.5637 -3.2826 0.3853 28 1 6.0271 -2.5869 -0.5205 29 1 6.9598 -6.6724 2.1377 30 1 0.9795 -2.6852 -0.5108 31 1 0.3425 -1.7393 -1.8774 32 1 1.7692 -2.7793 -2.1032 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930581554.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:35 Heat of formation + Delta-G solvation = -45.443994 kcal Electronic energy + Delta-G solvation = -13326.962439 eV Core-core repulsion = 11094.497871 eV Total energy + Delta-G solvation = -2232.464568 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.67233 -37.89218 -34.46902 -33.16904 -30.54342 -30.38818 -27.61492 -25.21720 -24.07948 -21.91394 -19.51201 -18.99020 -17.32888 -16.95997 -16.70914 -16.22286 -15.74338 -15.22213 -14.84231 -14.22436 -13.75772 -13.50917 -13.35604 -13.23330 -13.00652 -12.78444 -12.72072 -12.22940 -12.02169 -11.73270 -11.43174 -11.22146 -10.93077 -10.90527 -10.35082 -9.60198 -8.40267 -6.54996 1.37370 1.40665 1.56546 2.35538 2.94449 3.13038 3.42274 3.82351 4.01160 4.08198 4.30327 4.32591 4.47085 4.50203 4.60353 4.70284 4.78742 4.85452 4.88369 5.01567 5.05752 5.21434 5.28880 5.31432 5.47039 5.52265 5.65999 6.04399 6.21656 6.57350 7.16494 7.30958 8.73822 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.059991 B = 0.009201 C = 0.008701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.622763 B = 3042.292620 C = 3217.225426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.100 4.100 3 H 0.103 0.897 4 C -0.008 4.008 5 N -0.482 5.482 6 C 0.024 3.976 7 C 0.208 3.792 8 H 0.041 0.959 9 O -0.580 6.580 10 C -0.566 4.566 11 H 0.042 0.958 12 C 0.032 3.968 13 N -0.935 5.935 14 Si 0.976 3.024 15 H -0.275 1.275 16 H -0.269 1.269 17 H -0.299 1.299 18 C 0.021 3.979 19 H 0.091 0.909 20 C -0.156 4.156 21 H 0.054 0.946 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.370 0.630 29 H 0.269 0.731 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.782 12.435 -4.189 16.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.119 4.119 3 H 0.121 0.879 4 C -0.137 4.137 5 N -0.204 5.204 6 C -0.105 4.105 7 C 0.150 3.850 8 H 0.059 0.941 9 O -0.387 6.387 10 C -0.604 4.604 11 H 0.060 0.940 12 C -0.168 4.168 13 N -0.574 5.574 14 Si 0.804 3.196 15 H -0.200 1.200 16 H -0.194 1.194 17 H -0.227 1.227 18 C -0.088 4.088 19 H 0.110 0.890 20 C -0.214 4.214 21 H 0.073 0.927 22 H 0.086 0.914 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.217 0.783 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.019 12.851 -3.545 16.676 hybrid contribution 0.073 -1.067 0.012 1.070 sum -9.946 11.784 -3.532 15.820 Atomic orbital electron populations 1.21684 0.92535 1.02171 1.02891 1.22713 0.96781 0.98012 0.94392 0.87928 1.24034 0.93761 0.98965 0.96917 1.69046 1.29810 1.16209 1.05287 1.22953 0.98173 0.89212 1.00158 1.19557 0.83505 0.88562 0.93340 0.94097 1.86301 1.49964 1.68091 1.34317 1.21880 1.14925 0.93289 1.30278 0.93977 1.25783 0.98405 0.96183 0.96477 1.70059 1.30867 1.13957 1.42558 0.85261 0.79080 0.78105 0.77165 1.20034 1.19351 1.22720 1.23423 0.92100 0.96599 0.96675 0.89049 1.22033 1.00334 0.97566 1.01453 0.92709 0.91450 0.90848 0.91532 0.91080 0.91717 0.93879 0.78302 0.92186 0.93180 0.89305 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.62 71.98 0.62 -1.66 16 2 C -0.10 -2.27 4.65 -10.45 -0.05 -2.32 16 3 H 0.10 2.22 8.14 -2.39 -0.02 2.21 16 4 C -0.01 -0.23 6.98 83.57 0.58 0.35 16 5 N -0.48 -16.68 6.20 -902.05 -5.59 -22.28 16 6 C 0.02 0.96 3.51 86.30 0.30 1.26 16 7 C 0.21 10.18 2.58 29.85 0.08 10.26 16 8 H 0.04 2.13 7.21 -2.39 -0.02 2.11 16 9 O -0.58 -27.55 10.88 -148.98 -1.62 -29.17 16 10 C -0.57 -32.57 9.34 25.60 0.24 -32.33 16 11 H 0.04 2.62 7.99 -2.91 -0.02 2.59 16 12 C 0.03 1.89 5.47 84.65 0.46 2.35 16 13 N -0.94 -58.50 13.96 21.45 0.30 -58.20 16 14 Si 0.98 49.47 26.17 68.60 1.79 51.27 16 15 H -0.27 -13.69 7.11 99.48 0.71 -12.98 16 16 H -0.27 -13.55 6.55 99.48 0.65 -12.90 16 17 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 18 C 0.02 0.56 4.68 42.18 0.20 0.76 16 19 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 20 C -0.16 -3.72 7.11 71.98 0.51 -3.20 16 21 H 0.05 0.96 7.09 -2.39 -0.02 0.95 16 22 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.07 1.03 8.08 -2.38 -0.02 1.01 16 24 H 0.07 1.96 6.43 -2.39 -0.02 1.95 16 25 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.06 2.59 7.47 -2.39 -0.02 2.57 16 27 H 0.04 1.73 6.01 -2.39 -0.01 1.71 16 28 H 0.37 15.61 9.04 -74.06 -0.67 14.94 16 29 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 30 H 0.05 1.30 5.63 -2.39 -0.01 1.29 16 31 H 0.09 1.62 7.49 -2.39 -0.02 1.60 16 32 H 0.05 1.35 7.65 -2.39 -0.02 1.33 16 Total: -1.00 -66.35 251.88 -1.80 -68.14 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.37 Total: 14.76 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 2.95 Total: -24.53 kcal Atomic # 7 Polarization: -75.18 SS G_CDS: -5.29 Total: -80.47 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -1.62 Total: -29.17 kcal Atomic # 14 Polarization: 49.47 SS G_CDS: 1.79 Total: 51.27 kcal Total: -66.35 -1.80 -68.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930581554.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.701 kcal (2) G-P(sol) polarization free energy of solvation -66.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds