Wall clock time and date at job start Mon Mar 30 2020 02:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.70025 * 2 1 4 4 C 1.53194 * 109.59092 * 239.64588 * 2 1 3 5 5 H 1.08995 * 109.49927 * 174.89135 * 4 2 1 6 6 C 1.53002 * 109.49519 * 54.82659 * 4 2 1 7 7 O 1.42897 * 109.47137 * 175.00111 * 6 4 2 8 8 C 1.53043 * 109.31000 * 294.84861 * 4 2 1 9 9 C 1.53038 * 109.53784 * 298.63159 * 8 4 2 10 10 C 1.52765 * 109.38424 * 61.24001 * 9 8 4 11 11 N 1.46924 * 109.58689 * 120.35529 * 2 1 3 12 12 C 1.36940 * 120.62954 * 246.15483 * 11 2 1 13 13 H 1.08006 * 120.00240 * 332.12109 * 12 11 2 14 14 C 1.38815 * 119.99946 * 152.11350 * 12 11 2 15 15 N 1.31616 * 119.99941 * 335.49040 * 14 12 11 16 16 Si 1.86800 * 119.99908 * 155.48791 * 14 12 11 17 17 H 1.48498 * 109.46842 * 180.02562 * 16 14 12 18 18 H 1.48499 * 109.47075 * 300.00001 * 16 14 12 19 19 H 1.48497 * 109.46840 * 60.00369 * 16 14 12 20 20 H 1.08996 * 109.47272 * 299.64005 * 1 2 3 21 21 H 1.08998 * 109.47317 * 59.65115 * 1 2 3 22 22 H 1.09002 * 109.46569 * 179.64273 * 1 2 3 23 23 H 1.09002 * 109.47296 * 295.00447 * 6 4 2 24 24 H 1.08996 * 109.46984 * 55.00329 * 6 4 2 25 25 H 0.96704 * 114.00479 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.46416 * 58.65193 * 8 4 2 27 27 H 1.09001 * 109.45583 * 178.61163 * 8 4 2 28 28 H 1.08999 * 109.49855 * 181.31880 * 9 8 4 29 29 H 1.09003 * 109.49786 * 301.38523 * 9 8 4 30 30 H 1.08997 * 109.50761 * 185.70928 * 10 9 8 31 31 H 1.08995 * 109.43030 * 65.42464 * 10 9 8 32 32 H 0.97003 * 120.00315 * 354.24025 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0437 -0.7293 -1.2454 5 1 3.1298 -0.6502 -1.2913 6 6 1.4321 -0.0959 -2.4967 7 8 1.9994 -0.6986 -3.6615 8 6 1.6415 -2.2041 -1.1701 9 6 2.2801 -2.8464 0.0635 10 6 1.7741 -2.1421 1.3211 11 7 2.0225 -0.6995 1.1945 12 6 2.7052 -0.0210 2.1685 13 1 3.2733 0.8618 1.9147 14 6 2.6670 -0.4678 3.4823 15 7 1.6544 -1.1973 3.9001 16 14 4.0529 -0.0335 4.6571 17 1 3.7762 -0.6272 5.9898 18 1 5.3336 -0.5716 4.1323 19 1 4.1507 1.4429 4.7830 20 1 -0.3633 0.5082 0.8932 21 1 -0.3634 0.5192 -0.8868 22 1 -0.3632 -1.0277 -0.0064 23 1 0.3537 -0.2543 -2.4942 24 1 1.6422 0.9736 -2.5021 25 1 1.6568 -0.3451 -4.4939 26 1 0.5566 -2.2816 -1.0993 27 1 1.9845 -2.7201 -2.0669 28 1 2.0124 -3.9022 0.1037 29 1 3.3641 -2.7478 0.0050 30 1 2.3026 -2.5288 2.1924 31 1 0.7045 -2.3203 1.4310 32 1 0.8954 -1.3531 3.3165 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001643389572.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:10 Heat of formation + Delta-G solvation = -45.970798 kcal Electronic energy + Delta-G solvation = -13701.931228 eV Core-core repulsion = 11469.443816 eV Total energy + Delta-G solvation = -2232.487412 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.66853 -36.24560 -33.41216 -31.64553 -30.10227 -27.33001 -25.26521 -23.87091 -21.80135 -20.76466 -18.14037 -17.37006 -16.96056 -14.86541 -14.69042 -14.01679 -13.93054 -13.50028 -13.35205 -12.62880 -12.51721 -12.08120 -11.66493 -11.37653 -11.06364 -10.74851 -10.50519 -10.33720 -10.04590 -9.94655 -9.79441 -9.69425 -9.48814 -9.12125 -8.32807 -6.83576 -6.02530 -3.18936 3.51596 3.55589 3.73227 4.43339 4.66881 5.16819 5.32699 5.40934 5.50278 5.62956 5.77940 5.82244 5.99607 6.09227 6.17879 6.28279 6.32993 6.46759 6.55299 6.63481 6.67821 6.86507 6.92095 7.04914 7.21473 7.32280 7.78767 8.05343 8.62458 9.17219 9.89495 10.35168 11.25882 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051540 B = 0.010502 C = 0.010251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.136486 B = 2665.426188 C = 2730.811353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.177 3.823 3 H 0.061 0.939 4 C -0.097 4.097 5 H 0.071 0.929 6 C 0.081 3.919 7 O -0.575 6.575 8 C -0.100 4.100 9 C -0.138 4.138 10 C 0.150 3.850 11 N -0.591 5.591 12 C -0.348 4.348 13 H 0.055 0.945 14 C -0.024 4.024 15 N -0.916 5.916 16 Si 1.064 2.936 17 H -0.286 1.286 18 H -0.294 1.294 19 H -0.293 1.293 20 H 0.052 0.948 21 H 0.039 0.961 22 H 0.049 0.951 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.370 0.630 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.016 0.984 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.389 0.705 -10.525 10.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.069 3.931 3 H 0.079 0.921 4 C -0.117 4.117 5 H 0.090 0.910 6 C 0.003 3.997 7 O -0.379 6.379 8 C -0.137 4.137 9 C -0.177 4.177 10 C 0.024 3.976 11 N -0.313 5.313 12 C -0.477 4.477 13 H 0.072 0.928 14 C -0.226 4.226 15 N -0.557 5.557 16 Si 0.894 3.106 17 H -0.211 1.211 18 H -0.221 1.221 19 H -0.220 1.220 20 H 0.071 0.929 21 H 0.058 0.942 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.215 0.785 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.034 0.966 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.455 0.137 -8.466 8.479 hybrid contribution -0.967 0.666 -2.029 2.344 sum -1.422 0.803 -10.494 10.621 Atomic orbital electron populations 1.22376 0.99009 1.00997 1.00072 1.20386 0.91445 0.94895 0.86351 0.92052 1.21646 1.00827 0.96213 0.93008 0.91027 1.22382 0.96329 0.95553 0.85456 1.86517 1.69134 1.66220 1.16040 1.21391 0.99673 0.95078 0.97603 1.22011 1.00543 0.98120 0.97062 1.20861 0.96941 0.84165 0.95654 1.44115 1.64787 1.02700 1.19682 1.19966 1.25851 1.13111 0.88743 0.92758 1.25828 1.01625 0.99704 0.95453 1.70769 1.05802 1.41068 1.38018 0.83536 0.75360 0.75572 0.76124 1.21122 1.22090 1.22039 0.92880 0.94162 0.93159 0.93671 0.94121 0.78458 0.92878 0.92926 0.93248 0.92543 0.90478 0.96631 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 8.52 37.16 0.32 -2.83 16 2 C 0.18 3.75 2.88 -67.60 -0.19 3.55 16 3 H 0.06 1.33 7.93 -51.93 -0.41 0.92 16 4 C -0.10 -1.81 2.35 -90.50 -0.21 -2.02 16 5 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 6 C 0.08 1.21 5.77 37.16 0.21 1.43 16 7 O -0.57 -8.23 13.18 -35.23 -0.46 -8.70 16 8 C -0.10 -1.84 4.87 -26.69 -0.13 -1.97 16 9 C -0.14 -2.80 6.06 -26.83 -0.16 -2.96 16 10 C 0.15 3.60 4.25 -3.93 -0.02 3.58 16 11 N -0.59 -14.96 2.56 -165.03 -0.42 -15.38 16 12 C -0.35 -9.82 9.49 -15.06 -0.14 -9.96 16 13 H 0.05 1.54 7.94 -52.48 -0.42 1.13 16 14 C -0.02 -0.69 4.70 -17.43 -0.08 -0.77 16 15 N -0.92 -27.66 12.42 55.49 0.69 -26.97 16 16 Si 1.06 25.56 29.98 -169.99 -5.10 20.47 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 21 H 0.04 0.63 6.52 -51.93 -0.34 0.29 16 22 H 0.05 0.96 5.74 -51.93 -0.30 0.66 16 23 H 0.05 0.63 6.68 -51.93 -0.35 0.28 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.37 3.32 9.12 45.56 0.42 3.74 16 26 H 0.05 0.95 6.49 -51.93 -0.34 0.61 16 27 H 0.05 0.93 7.80 -51.93 -0.40 0.52 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.08 2.08 6.32 -51.93 -0.33 1.75 16 31 H 0.02 0.38 7.23 -51.93 -0.38 0.01 16 32 H 0.27 8.18 6.69 -40.82 -0.27 7.90 16 LS Contribution 247.51 15.07 3.73 3.73 Total: -1.00 -31.21 247.51 -6.00 -37.21 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.02 Total: 1.59 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -0.41 Total: -11.95 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.27 Total: -42.35 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.46 Total: -8.70 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.10 Total: 20.47 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.21 -6.00 -37.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643389572.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.761 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds