Wall clock time and date at job start Mon Mar 30 2020 02:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.70025 * 2 1 4 4 C 1.53194 * 109.59092 * 239.64588 * 2 1 3 5 5 H 1.08995 * 109.49927 * 174.89135 * 4 2 1 6 6 C 1.53002 * 109.49519 * 54.82659 * 4 2 1 7 7 O 1.42897 * 109.47137 * 175.00111 * 6 4 2 8 8 C 1.53043 * 109.31000 * 294.84861 * 4 2 1 9 9 C 1.53038 * 109.53784 * 298.63159 * 8 4 2 10 10 C 1.52765 * 109.38424 * 61.24001 * 9 8 4 11 11 N 1.46924 * 109.58689 * 120.35529 * 2 1 3 12 12 C 1.36940 * 120.62954 * 246.15483 * 11 2 1 13 13 H 1.08006 * 120.00240 * 332.12109 * 12 11 2 14 14 C 1.38815 * 119.99946 * 152.11350 * 12 11 2 15 15 N 1.31616 * 119.99941 * 335.49040 * 14 12 11 16 16 Si 1.86800 * 119.99908 * 155.48791 * 14 12 11 17 17 H 1.48498 * 109.46842 * 180.02562 * 16 14 12 18 18 H 1.48499 * 109.47075 * 300.00001 * 16 14 12 19 19 H 1.48497 * 109.46840 * 60.00369 * 16 14 12 20 20 H 1.08996 * 109.47272 * 299.64005 * 1 2 3 21 21 H 1.08998 * 109.47317 * 59.65115 * 1 2 3 22 22 H 1.09002 * 109.46569 * 179.64273 * 1 2 3 23 23 H 1.09002 * 109.47296 * 295.00447 * 6 4 2 24 24 H 1.08996 * 109.46984 * 55.00329 * 6 4 2 25 25 H 0.96704 * 114.00479 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.46416 * 58.65193 * 8 4 2 27 27 H 1.09001 * 109.45583 * 178.61163 * 8 4 2 28 28 H 1.08999 * 109.49855 * 181.31880 * 9 8 4 29 29 H 1.09003 * 109.49786 * 301.38523 * 9 8 4 30 30 H 1.08997 * 109.50761 * 185.70928 * 10 9 8 31 31 H 1.08995 * 109.43030 * 65.42464 * 10 9 8 32 32 H 0.97003 * 120.00315 * 354.24025 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0437 -0.7293 -1.2454 5 1 3.1298 -0.6502 -1.2913 6 6 1.4321 -0.0959 -2.4967 7 8 1.9994 -0.6986 -3.6615 8 6 1.6415 -2.2041 -1.1701 9 6 2.2801 -2.8464 0.0635 10 6 1.7741 -2.1421 1.3211 11 7 2.0225 -0.6995 1.1945 12 6 2.7052 -0.0210 2.1685 13 1 3.2733 0.8618 1.9147 14 6 2.6670 -0.4678 3.4823 15 7 1.6544 -1.1973 3.9001 16 14 4.0529 -0.0335 4.6571 17 1 3.7762 -0.6272 5.9898 18 1 5.3336 -0.5716 4.1323 19 1 4.1507 1.4429 4.7830 20 1 -0.3633 0.5082 0.8932 21 1 -0.3634 0.5192 -0.8868 22 1 -0.3632 -1.0277 -0.0064 23 1 0.3537 -0.2543 -2.4942 24 1 1.6422 0.9736 -2.5021 25 1 1.6568 -0.3451 -4.4939 26 1 0.5566 -2.2816 -1.0993 27 1 1.9845 -2.7201 -2.0669 28 1 2.0124 -3.9022 0.1037 29 1 3.3641 -2.7478 0.0050 30 1 2.3026 -2.5288 2.1924 31 1 0.7045 -2.3203 1.4310 32 1 0.8954 -1.3531 3.3165 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001643389572.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:10 Heat of formation + Delta-G solvation = -68.142650 kcal Electronic energy + Delta-G solvation = -13702.892672 eV Core-core repulsion = 11469.443816 eV Total energy + Delta-G solvation = -2233.448856 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.27946 -37.55220 -35.27225 -33.31009 -31.99331 -29.01269 -26.88904 -25.68923 -23.50045 -22.46841 -19.89865 -19.14887 -18.28209 -16.58366 -16.15043 -15.78205 -15.54309 -15.32029 -15.03963 -14.19965 -14.09384 -13.73893 -13.35473 -12.90729 -12.74453 -12.61446 -12.22355 -12.00673 -11.91928 -11.67202 -11.51971 -11.16495 -11.06630 -10.72456 -10.44767 -8.91293 -8.23847 -5.38905 1.56681 1.64502 1.83298 2.64128 3.18469 3.35294 3.58384 3.81962 4.05213 4.14287 4.30790 4.41130 4.52008 4.57857 4.58910 4.64540 4.84883 4.87725 4.93601 5.05098 5.08436 5.24976 5.29674 5.32707 5.41056 5.65405 5.84603 6.40971 6.96974 7.09496 7.79880 8.25246 9.01125 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051540 B = 0.010502 C = 0.010251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.136486 B = 2665.426188 C = 2730.811353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.170 3.830 3 H 0.050 0.950 4 C -0.092 4.092 5 H 0.047 0.953 6 C 0.090 3.910 7 O -0.589 6.589 8 C -0.093 4.093 9 C -0.131 4.131 10 C 0.156 3.844 11 N -0.610 5.610 12 C -0.355 4.355 13 H 0.047 0.953 14 C -0.075 4.075 15 N -0.942 5.942 16 Si 1.113 2.887 17 H -0.291 1.291 18 H -0.283 1.283 19 H -0.275 1.275 20 H 0.027 0.973 21 H 0.081 0.919 22 H 0.049 0.951 23 H 0.064 0.936 24 H 0.053 0.947 25 H 0.396 0.604 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.008 0.992 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.517 0.993 -12.339 12.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.063 3.937 3 H 0.068 0.932 4 C -0.113 4.113 5 H 0.065 0.935 6 C 0.012 3.988 7 O -0.398 6.398 8 C -0.130 4.130 9 C -0.170 4.170 10 C 0.031 3.969 11 N -0.334 5.334 12 C -0.485 4.485 13 H 0.065 0.935 14 C -0.271 4.271 15 N -0.583 5.583 16 Si 0.938 3.062 17 H -0.217 1.217 18 H -0.209 1.209 19 H -0.201 1.201 20 H 0.046 0.954 21 H 0.099 0.901 22 H 0.068 0.932 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.245 0.755 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.026 0.974 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.595 0.443 -10.344 10.371 hybrid contribution -0.931 0.591 -1.546 1.899 sum -1.526 1.034 -11.890 12.032 Atomic orbital electron populations 1.22230 0.97023 1.01183 1.00797 1.20573 0.92882 0.94318 0.85924 0.93163 1.21483 0.99487 0.96469 0.93814 0.93464 1.22159 0.96771 0.95669 0.84159 1.86440 1.69629 1.66629 1.17065 1.21345 1.00056 0.94735 0.96854 1.21909 0.99724 0.99224 0.96124 1.20701 0.95990 0.84078 0.96146 1.44348 1.65287 1.03382 1.20337 1.20198 1.25678 1.12953 0.89667 0.93539 1.27149 1.02959 0.99652 0.97377 1.70883 1.06345 1.43119 1.38003 0.82881 0.73061 0.76347 0.73945 1.21652 1.20902 1.20112 0.95398 0.90062 0.93234 0.91818 0.92913 0.75464 0.91831 0.91374 0.90985 0.93819 0.94213 0.97407 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.58 8.52 71.98 0.61 -4.97 16 2 C 0.17 7.06 2.88 44.98 0.13 7.19 16 3 H 0.05 2.17 7.93 -2.39 -0.02 2.15 16 4 C -0.09 -3.28 2.35 -10.71 -0.03 -3.30 16 5 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 6 C 0.09 2.38 5.77 71.98 0.42 2.80 16 7 O -0.59 -14.58 13.18 -148.98 -1.96 -16.55 16 8 C -0.09 -3.18 4.87 30.62 0.15 -3.03 16 9 C -0.13 -5.19 6.06 30.53 0.19 -5.01 16 10 C 0.16 7.67 4.25 86.22 0.37 8.03 16 11 N -0.61 -31.36 2.56 -676.05 -1.73 -33.09 16 12 C -0.36 -20.45 9.49 84.03 0.80 -19.66 16 13 H 0.05 2.69 7.94 -2.91 -0.02 2.67 16 14 C -0.07 -4.36 4.70 84.86 0.40 -3.96 16 15 N -0.94 -58.39 12.42 21.65 0.27 -58.13 16 16 Si 1.11 52.18 29.98 68.60 2.06 54.23 16 17 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 20 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.08 2.27 6.52 -2.39 -0.02 2.26 16 22 H 0.05 1.80 5.74 -2.39 -0.01 1.79 16 23 H 0.06 1.47 6.68 -2.39 -0.02 1.45 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.40 5.38 9.12 -74.05 -0.68 4.71 16 26 H 0.06 2.08 6.49 -2.39 -0.02 2.06 16 27 H 0.07 2.18 7.80 -2.39 -0.02 2.16 16 28 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 2.21 6.32 -2.39 -0.02 2.20 16 31 H 0.01 0.40 7.23 -2.39 -0.02 0.38 16 32 H 0.26 16.08 6.69 -92.71 -0.62 15.46 16 Total: -1.00 -68.15 247.51 2.24 -65.91 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.57 Total: 9.54 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 3.03 Total: -21.92 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -1.46 Total: -91.22 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -1.96 Total: -16.55 kcal Atomic # 14 Polarization: 52.18 SS G_CDS: 2.06 Total: 54.23 kcal Total: -68.15 2.24 -65.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643389572.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.231 kcal (2) G-P(sol) polarization free energy of solvation -68.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds