Wall clock time and date at job start Mon Mar 30 2020 02:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.70690 * 2 1 4 4 C 1.53188 * 109.58845 * 120.36268 * 2 1 3 5 5 H 1.08995 * 109.50215 * 185.10719 * 4 2 1 6 6 C 1.53008 * 109.52114 * 305.18041 * 4 2 1 7 7 O 1.42896 * 109.47219 * 184.91513 * 6 4 2 8 8 C 1.53040 * 109.31698 * 65.14658 * 4 2 1 9 9 C 1.53037 * 109.53673 * 61.36803 * 8 4 2 10 10 C 1.53195 * 109.31389 * 298.63549 * 9 8 4 11 11 N 1.46927 * 108.77442 * 54.63767 * 10 9 8 12 12 C 1.36935 * 120.63389 * 126.41502 * 11 10 9 13 13 H 1.08005 * 119.99603 * 207.67754 * 12 11 10 14 14 C 1.38806 * 120.00126 * 27.67336 * 12 11 10 15 15 N 1.31614 * 120.00086 * 17.35643 * 14 12 11 16 16 Si 1.86802 * 120.00189 * 197.35767 * 14 12 11 17 17 H 1.48498 * 109.47131 * 89.99840 * 16 14 12 18 18 H 1.48493 * 109.47342 * 210.00052 * 16 14 12 19 19 H 1.48508 * 109.46944 * 329.99903 * 16 14 12 20 20 H 1.08997 * 109.47435 * 299.64327 * 1 2 3 21 21 H 1.09007 * 109.47136 * 59.64300 * 1 2 3 22 22 H 1.08994 * 109.47394 * 179.64220 * 1 2 3 23 23 H 1.08997 * 109.46917 * 304.92516 * 6 4 2 24 24 H 1.09006 * 109.46913 * 64.91662 * 6 4 2 25 25 H 0.96702 * 114.00051 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.46214 * 181.39044 * 8 4 2 27 27 H 1.09007 * 109.46042 * 301.36225 * 8 4 2 28 28 H 1.09000 * 109.49823 * 58.58361 * 9 8 4 29 29 H 1.08996 * 109.50041 * 178.65400 * 9 8 4 30 30 H 1.08996 * 109.58896 * 174.41740 * 10 9 8 31 31 H 1.08998 * 109.59112 * 294.70701 * 10 9 8 32 32 H 0.97002 * 120.00256 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7295 1.2453 5 1 3.1296 -0.6505 1.2913 6 6 1.4321 -0.0968 2.4971 7 8 1.9983 -0.7014 3.6615 8 6 1.6414 -2.2042 1.1700 9 6 2.2799 -2.8465 -0.0636 10 6 1.7690 -2.1410 -1.3239 11 7 2.0225 -0.6996 -1.1946 12 6 2.7043 -0.0209 -2.1691 13 1 3.2696 0.8640 -1.9160 14 6 2.6691 -0.4701 -3.4819 15 7 1.7364 -1.3170 -3.8629 16 14 3.9454 0.1273 -4.7082 17 1 5.1161 -0.7861 -4.6887 18 1 3.3535 0.1444 -6.0700 19 1 4.3812 1.4986 -4.3406 20 1 -0.3634 0.5083 0.8931 21 1 -0.3634 0.5194 -0.8868 22 1 -0.3634 -1.0276 -0.0064 23 1 1.6432 0.9726 2.5037 24 1 0.3535 -0.2542 2.4939 25 1 1.6563 -0.3479 4.4940 26 1 1.9843 -2.7204 2.0667 27 1 0.5564 -2.2816 1.0989 28 1 3.3638 -2.7475 -0.0055 29 1 2.0126 -3.9024 -0.1036 30 1 2.2943 -2.5274 -2.1973 31 1 0.6990 -2.3176 -1.4332 32 1 1.7115 -1.6307 -4.7804 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001643389573.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:12 Heat of formation + Delta-G solvation = -43.131556 kcal Electronic energy + Delta-G solvation = -13660.212411 eV Core-core repulsion = 11427.848118 eV Total energy + Delta-G solvation = -2232.364293 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.50446 -36.10999 -33.14990 -31.46709 -30.26192 -27.31813 -25.07463 -24.10418 -21.61742 -20.78574 -17.98633 -17.11942 -16.53034 -14.93805 -14.70523 -14.06798 -13.87658 -13.49408 -12.91384 -12.51135 -12.19875 -11.99204 -11.68366 -11.28229 -10.91648 -10.82347 -10.53177 -10.26517 -10.13556 -10.04631 -9.75408 -9.60864 -9.35500 -9.16574 -8.41126 -6.63191 -5.74714 -3.16766 3.40359 3.47147 3.48117 4.44335 4.63276 5.28441 5.40242 5.45575 5.61803 5.73111 5.88251 5.92864 6.12338 6.22932 6.30802 6.43935 6.44902 6.60849 6.70474 6.77555 6.86059 7.01973 7.04387 7.23312 7.49625 7.74687 7.83545 7.85813 8.49704 9.25864 9.89605 10.46737 11.33270 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051934 B = 0.010469 C = 0.010097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.012342 B = 2673.803027 C = 2772.522103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.060 0.940 4 C -0.097 4.097 5 H 0.070 0.930 6 C 0.080 3.920 7 O -0.575 6.575 8 C -0.100 4.100 9 C -0.144 4.144 10 C 0.170 3.830 11 N -0.584 5.584 12 C -0.251 4.251 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.901 5.901 16 Si 0.902 3.098 17 H -0.288 1.288 18 H -0.292 1.292 19 H -0.279 1.279 20 H 0.036 0.964 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.040 0.960 24 H 0.045 0.955 25 H 0.369 0.631 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.018 0.982 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 0.774 10.041 10.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.067 3.933 3 H 0.078 0.922 4 C -0.117 4.117 5 H 0.089 0.911 6 C 0.002 3.998 7 O -0.379 6.379 8 C -0.137 4.137 9 C -0.183 4.183 10 C 0.044 3.956 11 N -0.305 5.305 12 C -0.380 4.380 13 H 0.083 0.917 14 C -0.196 4.196 15 N -0.546 5.546 16 Si 0.732 3.268 17 H -0.215 1.215 18 H -0.218 1.218 19 H -0.205 1.205 20 H 0.055 0.945 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.215 0.785 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.036 0.964 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.300 0.374 9.371 9.468 hybrid contribution 0.230 0.597 -0.302 0.707 sum -1.070 0.971 9.069 9.183 Atomic orbital electron populations 1.22350 0.98920 1.01144 0.99815 1.20392 0.91635 0.94748 0.86521 0.92209 1.21657 1.00709 0.96339 0.92976 0.91121 1.22402 0.96392 0.95487 0.85488 1.86520 1.69248 1.66126 1.16041 1.21390 0.99711 0.94999 0.97616 1.22200 1.00249 0.98171 0.97672 1.20779 0.97389 0.83008 0.94426 1.44082 1.63962 1.03620 1.18801 1.19193 1.21921 1.10145 0.86770 0.91720 1.25021 0.97780 1.00110 0.96729 1.70044 1.31789 1.35919 1.16834 0.86296 0.81395 0.78491 0.80626 1.21490 1.21825 1.20468 0.94493 0.92781 0.93058 0.94181 0.93660 0.78549 0.93240 0.92908 0.92907 0.93523 0.89680 0.96428 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 8.53 37.16 0.32 -2.83 16 2 C 0.18 3.70 2.88 -67.60 -0.19 3.50 16 3 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 4 C -0.10 -1.81 2.35 -90.50 -0.21 -2.02 16 5 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 6 C 0.08 1.21 5.77 37.16 0.21 1.42 16 7 O -0.58 -8.29 13.18 -35.23 -0.46 -8.76 16 8 C -0.10 -1.86 4.87 -26.69 -0.13 -1.99 16 9 C -0.14 -2.96 6.08 -26.61 -0.16 -3.12 16 10 C 0.17 4.16 4.89 -3.71 -0.02 4.15 16 11 N -0.58 -14.79 2.70 -164.77 -0.45 -15.24 16 12 C -0.25 -6.96 9.58 -15.06 -0.14 -7.10 16 13 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 14 C 0.00 0.06 4.91 -17.44 -0.09 -0.03 16 15 N -0.90 -26.37 11.19 55.49 0.62 -25.75 16 16 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H 0.04 0.58 6.48 -51.93 -0.34 0.25 16 21 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 22 H 0.05 1.01 5.73 -51.93 -0.30 0.71 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.64 6.66 -51.93 -0.35 0.29 16 25 H 0.37 3.35 9.12 45.56 0.42 3.77 16 26 H 0.05 0.89 7.79 -51.93 -0.40 0.48 16 27 H 0.05 0.97 6.51 -51.93 -0.34 0.63 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.09 2.33 6.04 -51.93 -0.31 2.02 16 31 H 0.02 0.45 7.49 -51.93 -0.39 0.06 16 32 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 248.49 15.07 3.74 3.74 Total: -1.00 -30.38 248.49 -6.07 -36.46 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -4.08 Total: 0.63 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -0.42 Total: -8.01 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.18 Total: -40.99 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.46 Total: -8.76 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.38 -6.07 -36.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643389573.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.674 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds