Wall clock time and date at job start Mon Mar 30 2020 02:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.70690 * 2 1 4 4 C 1.53188 * 109.58845 * 120.36268 * 2 1 3 5 5 H 1.08995 * 109.50215 * 185.10719 * 4 2 1 6 6 C 1.53008 * 109.52114 * 305.18041 * 4 2 1 7 7 O 1.42896 * 109.47219 * 184.91513 * 6 4 2 8 8 C 1.53040 * 109.31698 * 65.14658 * 4 2 1 9 9 C 1.53037 * 109.53673 * 61.36803 * 8 4 2 10 10 C 1.53195 * 109.31389 * 298.63549 * 9 8 4 11 11 N 1.46927 * 108.77442 * 54.63767 * 10 9 8 12 12 C 1.36935 * 120.63389 * 126.41502 * 11 10 9 13 13 H 1.08005 * 119.99603 * 207.67754 * 12 11 10 14 14 C 1.38806 * 120.00126 * 27.67336 * 12 11 10 15 15 N 1.31614 * 120.00086 * 17.35643 * 14 12 11 16 16 Si 1.86802 * 120.00189 * 197.35767 * 14 12 11 17 17 H 1.48498 * 109.47131 * 89.99840 * 16 14 12 18 18 H 1.48493 * 109.47342 * 210.00052 * 16 14 12 19 19 H 1.48508 * 109.46944 * 329.99903 * 16 14 12 20 20 H 1.08997 * 109.47435 * 299.64327 * 1 2 3 21 21 H 1.09007 * 109.47136 * 59.64300 * 1 2 3 22 22 H 1.08994 * 109.47394 * 179.64220 * 1 2 3 23 23 H 1.08997 * 109.46917 * 304.92516 * 6 4 2 24 24 H 1.09006 * 109.46913 * 64.91662 * 6 4 2 25 25 H 0.96702 * 114.00051 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.46214 * 181.39044 * 8 4 2 27 27 H 1.09007 * 109.46042 * 301.36225 * 8 4 2 28 28 H 1.09000 * 109.49823 * 58.58361 * 9 8 4 29 29 H 1.08996 * 109.50041 * 178.65400 * 9 8 4 30 30 H 1.08996 * 109.58896 * 174.41740 * 10 9 8 31 31 H 1.08998 * 109.59112 * 294.70701 * 10 9 8 32 32 H 0.97002 * 120.00256 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7295 1.2453 5 1 3.1296 -0.6505 1.2913 6 6 1.4321 -0.0968 2.4971 7 8 1.9983 -0.7014 3.6615 8 6 1.6414 -2.2042 1.1700 9 6 2.2799 -2.8465 -0.0636 10 6 1.7690 -2.1410 -1.3239 11 7 2.0225 -0.6996 -1.1946 12 6 2.7043 -0.0209 -2.1691 13 1 3.2696 0.8640 -1.9160 14 6 2.6691 -0.4701 -3.4819 15 7 1.7364 -1.3170 -3.8629 16 14 3.9454 0.1273 -4.7082 17 1 5.1161 -0.7861 -4.6887 18 1 3.3535 0.1444 -6.0700 19 1 4.3812 1.4986 -4.3406 20 1 -0.3634 0.5083 0.8931 21 1 -0.3634 0.5194 -0.8868 22 1 -0.3634 -1.0276 -0.0064 23 1 1.6432 0.9726 2.5037 24 1 0.3535 -0.2542 2.4939 25 1 1.6563 -0.3479 4.4940 26 1 1.9843 -2.7204 2.0667 27 1 0.5564 -2.2816 1.0989 28 1 3.3638 -2.7475 -0.0055 29 1 2.0126 -3.9024 -0.1036 30 1 2.2943 -2.5274 -2.1973 31 1 0.6990 -2.3176 -1.4332 32 1 1.7115 -1.6307 -4.7804 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001643389573.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:11 Heat of formation + Delta-G solvation = -64.519345 kcal Electronic energy + Delta-G solvation = -13661.139856 eV Core-core repulsion = 11427.848118 eV Total energy + Delta-G solvation = -2233.291737 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.09678 -37.40686 -35.01585 -33.14195 -32.15560 -28.99195 -26.72897 -25.88218 -23.31556 -22.47753 -19.64413 -18.62249 -18.17666 -16.89838 -16.09605 -15.85874 -15.34663 -15.15932 -14.61381 -14.16327 -13.88829 -13.64531 -13.28363 -12.92999 -12.80168 -12.59193 -12.26979 -12.10702 -11.92095 -11.81576 -11.38810 -11.04644 -11.02098 -10.64475 -10.51050 -8.66512 -7.86202 -5.30771 1.45434 1.47392 1.55745 2.50305 3.26669 3.41013 3.72703 3.93244 4.17526 4.25167 4.44040 4.52677 4.62287 4.69165 4.74961 4.78428 4.96199 5.02671 5.07664 5.16853 5.21716 5.41936 5.46130 5.53199 5.58937 5.70254 5.84488 6.40473 7.03027 7.16392 7.88975 8.40490 9.19611 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.051934 B = 0.010469 C = 0.010097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.012342 B = 2673.803027 C = 2772.522103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.168 3.832 3 H 0.055 0.945 4 C -0.092 4.092 5 H 0.049 0.951 6 C 0.090 3.910 7 O -0.590 6.590 8 C -0.092 4.092 9 C -0.135 4.135 10 C 0.177 3.823 11 N -0.603 5.603 12 C -0.262 4.262 13 H 0.064 0.936 14 C -0.050 4.050 15 N -0.932 5.932 16 Si 0.965 3.035 17 H -0.287 1.287 18 H -0.294 1.294 19 H -0.269 1.269 20 H 0.078 0.922 21 H 0.028 0.972 22 H 0.045 0.955 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.395 0.605 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.000 1.000 32 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.711 1.274 11.842 12.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.061 3.939 3 H 0.073 0.927 4 C -0.112 4.112 5 H 0.068 0.932 6 C 0.012 3.988 7 O -0.398 6.398 8 C -0.130 4.130 9 C -0.174 4.174 10 C 0.051 3.949 11 N -0.325 5.325 12 C -0.392 4.392 13 H 0.081 0.919 14 C -0.245 4.245 15 N -0.578 5.578 16 Si 0.793 3.207 17 H -0.214 1.214 18 H -0.220 1.220 19 H -0.193 1.193 20 H 0.097 0.903 21 H 0.047 0.953 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.244 0.756 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.019 0.981 32 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.406 0.895 11.226 11.349 hybrid contribution 0.258 0.452 -0.795 0.950 sum -1.148 1.346 10.431 10.580 Atomic orbital electron populations 1.22206 0.97251 1.00978 1.00614 1.20592 0.92840 0.94474 0.86002 0.92703 1.21495 0.99559 0.96365 0.93827 0.93245 1.22181 0.96744 0.95720 0.84186 1.86443 1.69731 1.66567 1.17081 1.21338 0.99929 0.94910 0.96812 1.22069 0.99566 0.99089 0.96725 1.20562 0.95871 0.83343 0.95080 1.44326 1.64409 1.04113 1.19610 1.19493 1.21998 1.10087 0.87637 0.91869 1.25751 0.99572 1.00780 0.98438 1.70189 1.33401 1.37371 1.16860 0.85300 0.78875 0.78362 0.78128 1.21441 1.22050 1.19342 0.90319 0.95307 0.93609 0.92762 0.91985 0.75568 0.91744 0.92128 0.93922 0.91559 0.93264 0.98148 0.94182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.59 8.53 71.98 0.61 -4.98 16 2 C 0.17 6.92 2.88 44.97 0.13 7.05 16 3 H 0.05 2.28 7.93 -2.39 -0.02 2.27 16 4 C -0.09 -3.27 2.35 -10.71 -0.03 -3.29 16 5 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 6 C 0.09 2.37 5.77 71.98 0.42 2.78 16 7 O -0.59 -14.69 13.18 -148.98 -1.96 -16.65 16 8 C -0.09 -3.24 4.87 30.62 0.15 -3.09 16 9 C -0.14 -5.48 6.08 30.67 0.19 -5.29 16 10 C 0.18 8.86 4.89 86.36 0.42 9.28 16 11 N -0.60 -30.89 2.70 -675.22 -1.82 -32.72 16 12 C -0.26 -14.76 9.58 84.03 0.81 -13.96 16 13 H 0.06 3.49 7.89 -2.91 -0.02 3.47 16 14 C -0.05 -2.85 4.91 84.86 0.42 -2.43 16 15 N -0.93 -56.04 11.19 21.65 0.24 -55.80 16 16 Si 0.96 45.83 29.59 68.60 2.03 47.86 16 17 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 18 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 H 0.08 2.22 6.48 -2.39 -0.02 2.21 16 21 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 22 H 0.04 1.73 5.73 -2.39 -0.01 1.71 16 23 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.45 6.66 -2.38 -0.02 1.43 16 25 H 0.39 5.44 9.12 -74.06 -0.68 4.77 16 26 H 0.06 2.11 7.79 -2.39 -0.02 2.09 16 27 H 0.06 2.05 6.51 -2.38 -0.02 2.03 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.05 2.80 6.04 -2.39 -0.01 2.78 16 31 H 0.00 0.02 7.49 -2.39 -0.02 0.01 16 32 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -65.79 248.49 2.02 -63.77 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 0.42 Total: 7.48 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 3.11 Total: -13.93 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -1.58 Total: -88.52 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -1.96 Total: -16.65 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -65.79 2.02 -63.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643389573.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.754 kcal (2) G-P(sol) polarization free energy of solvation -65.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds