Wall clock time and date at job start Mon Mar 30 2020 02:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.58681 * 2 1 4 4 C 1.53194 * 109.58314 * 120.42303 * 2 1 3 5 5 H 1.08996 * 109.50432 * 54.46908 * 4 2 1 6 6 C 1.53001 * 109.49819 * 294.37260 * 4 2 1 7 7 O 1.42893 * 109.47408 * 175.00034 * 6 4 2 8 8 C 1.53043 * 109.31052 * 174.42380 * 4 2 1 9 9 C 1.53070 * 109.66102 * 298.69403 * 8 4 2 10 10 C 1.53196 * 109.29175 * 61.15813 * 9 8 4 11 11 N 1.46927 * 109.59113 * 239.70846 * 2 1 3 12 12 C 1.36941 * 120.62884 * 6.63236 * 11 2 1 13 13 H 1.08008 * 119.99603 * 330.13656 * 12 11 2 14 14 C 1.38806 * 120.00166 * 150.13932 * 12 11 2 15 15 N 1.31624 * 120.00191 * 344.49933 * 14 12 11 16 16 Si 1.86800 * 120.00146 * 164.49608 * 14 12 11 17 17 H 1.48506 * 109.46812 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47258 * 119.99807 * 16 14 12 19 19 H 1.48499 * 109.47344 * 240.00342 * 16 14 12 20 20 H 1.09005 * 109.47323 * 180.28294 * 1 2 3 21 21 H 1.08991 * 109.47597 * 300.29299 * 1 2 3 22 22 H 1.09004 * 109.46951 * 60.28931 * 1 2 3 23 23 H 1.09006 * 109.47078 * 295.00704 * 6 4 2 24 24 H 1.09000 * 109.47229 * 55.00107 * 6 4 2 25 25 H 0.96705 * 114.00173 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.46220 * 58.66102 * 8 4 2 27 27 H 1.09005 * 109.46020 * 178.62222 * 8 4 2 28 28 H 1.08999 * 109.39382 * 301.28582 * 9 8 4 29 29 H 1.08998 * 109.62414 * 181.16823 * 9 8 4 30 30 H 1.09000 * 109.58857 * 185.72245 * 10 9 8 31 31 H 1.08997 * 109.58977 * 65.43464 * 10 9 8 32 32 H 0.96995 * 120.00379 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0434 -0.7309 1.2446 5 1 1.6029 -1.7268 1.2894 6 6 1.6538 0.0573 2.4968 7 8 2.0300 -0.6812 3.6608 8 6 3.5674 -0.8494 1.1692 9 6 3.9602 -1.6642 -0.0656 10 6 3.4652 -0.9454 -1.3247 11 7 2.0226 -0.6982 -1.1952 12 6 1.1538 -1.1102 -2.1703 13 1 0.1398 -1.3777 -1.9121 14 6 1.5764 -1.1840 -3.4904 15 7 2.6873 -0.5826 -3.8605 16 14 0.5688 -2.1368 -4.7418 17 1 -0.6269 -2.7152 -4.0775 18 1 0.1365 -1.2223 -5.8290 19 1 1.3952 -3.2300 -5.3138 20 1 -0.3634 -1.0277 0.0051 21 1 -0.3634 0.5183 0.8872 22 1 -0.3633 0.5094 -0.8926 23 1 2.1670 1.0190 2.4950 24 1 0.5762 0.2206 2.5026 25 1 1.8130 -0.2402 4.4936 26 1 4.0061 0.1460 1.0997 27 1 3.9377 -1.3474 2.0654 28 1 3.5036 -2.6522 -0.0075 29 1 5.0446 -1.7658 -0.1074 30 1 3.6519 -1.5692 -2.1988 31 1 3.9901 0.0035 -1.4341 32 1 2.9824 -0.6339 -4.7830 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001643389574.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:13 Heat of formation + Delta-G solvation = -65.358197 kcal Electronic energy + Delta-G solvation = -13626.162723 eV Core-core repulsion = 11392.834610 eV Total energy + Delta-G solvation = -2233.328113 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.96067 -37.41765 -34.90899 -33.73197 -32.14287 -28.44540 -27.01937 -26.06233 -22.81494 -22.04399 -20.68988 -18.38966 -18.09499 -17.02053 -15.90965 -15.77161 -15.45538 -15.07377 -14.86826 -14.27374 -13.98328 -13.40032 -13.21339 -12.82129 -12.75146 -12.55898 -12.22611 -12.20071 -11.97299 -11.67955 -11.58206 -11.10617 -10.97857 -10.63324 -10.52563 -8.61847 -7.84175 -5.30780 1.45242 1.47260 1.57407 2.51255 3.28887 3.40063 3.71779 3.92384 4.13994 4.23490 4.40916 4.58040 4.63453 4.66462 4.71887 4.76967 4.95257 4.98631 5.07177 5.13874 5.27690 5.42758 5.45269 5.54770 5.60165 5.71852 5.78803 6.43329 7.02068 7.17985 7.89851 8.42819 9.22821 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.050834 B = 0.011009 C = 0.009766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.682157 B = 2542.808609 C = 2866.367801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.169 3.831 3 H 0.018 0.982 4 C -0.093 4.093 5 H 0.054 0.946 6 C 0.089 3.911 7 O -0.589 6.589 8 C -0.094 4.094 9 C -0.134 4.134 10 C 0.176 3.824 11 N -0.606 5.606 12 C -0.251 4.251 13 H 0.073 0.927 14 C -0.055 4.055 15 N -0.938 5.938 16 Si 0.963 3.037 17 H -0.265 1.265 18 H -0.292 1.292 19 H -0.293 1.293 20 H 0.046 0.954 21 H 0.079 0.921 22 H 0.042 0.958 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.395 0.605 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.050 0.950 31 H -0.005 1.005 32 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.910 1.126 11.904 12.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.063 3.937 3 H 0.036 0.964 4 C -0.114 4.114 5 H 0.073 0.927 6 C 0.011 3.989 7 O -0.397 6.397 8 C -0.132 4.132 9 C -0.173 4.173 10 C 0.051 3.949 11 N -0.330 5.330 12 C -0.381 4.381 13 H 0.091 0.909 14 C -0.250 4.250 15 N -0.584 5.584 16 Si 0.792 3.208 17 H -0.190 1.190 18 H -0.220 1.220 19 H -0.220 1.220 20 H 0.065 0.935 21 H 0.098 0.902 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.244 0.756 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.013 0.987 32 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.662 0.716 11.304 11.448 hybrid contribution -0.334 0.023 -0.823 0.888 sum -1.996 0.739 10.481 10.695 Atomic orbital electron populations 1.21817 0.94600 1.01276 1.01223 1.20538 0.94135 0.92862 0.86150 0.96418 1.21557 0.96442 0.99493 0.93869 0.92706 1.22152 0.98934 0.93520 0.84277 1.86441 1.85885 1.50334 1.17047 1.21330 0.95286 0.99511 0.97038 1.22058 0.99833 0.98902 0.96483 1.20575 0.83483 0.95701 0.95188 1.44382 1.03055 1.65985 1.19530 1.19533 0.95531 1.36377 0.86654 0.90914 1.25849 0.99249 1.01029 0.98876 1.70194 1.25937 1.45768 1.16538 0.85259 0.78486 0.77995 0.79068 1.18974 1.21952 1.21977 0.93483 0.90232 0.93850 0.92904 0.92044 0.75557 0.92907 0.91518 0.93640 0.91496 0.93197 0.98660 0.94335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 7.70 71.98 0.55 -4.29 16 2 C 0.17 7.03 2.96 44.97 0.13 7.16 16 3 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 4 C -0.09 -3.32 2.05 -10.71 -0.02 -3.34 16 5 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 6 C 0.09 2.38 6.30 71.98 0.45 2.83 16 7 O -0.59 -14.70 13.18 -148.98 -1.96 -16.66 16 8 C -0.09 -3.36 5.07 30.63 0.16 -3.20 16 9 C -0.13 -5.43 6.09 30.68 0.19 -5.24 16 10 C 0.18 8.92 5.28 86.36 0.46 9.37 16 11 N -0.61 -31.13 2.99 -675.21 -2.02 -33.15 16 12 C -0.25 -13.87 8.57 84.03 0.72 -13.15 16 13 H 0.07 3.89 6.24 -2.91 -0.02 3.87 16 14 C -0.06 -3.14 4.94 84.86 0.42 -2.72 16 15 N -0.94 -56.69 11.23 21.65 0.24 -56.45 16 16 Si 0.96 45.68 29.58 68.60 2.03 47.71 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 19 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 20 H 0.05 1.78 7.44 -2.38 -0.02 1.76 16 21 H 0.08 2.25 6.53 -2.39 -0.02 2.23 16 22 H 0.04 1.74 7.63 -2.38 -0.02 1.72 16 23 H 0.05 1.29 8.14 -2.38 -0.02 1.28 16 24 H 0.06 1.44 6.40 -2.39 -0.02 1.43 16 25 H 0.39 5.47 9.12 -74.05 -0.68 4.80 16 26 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.07 2.20 7.80 -2.38 -0.02 2.18 16 28 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.05 2.84 6.15 -2.39 -0.01 2.83 16 31 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.25 14.49 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -65.92 249.87 1.77 -64.15 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 0.42 Total: 6.98 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: 3.06 Total: -12.58 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -1.77 Total: -89.60 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -1.96 Total: -16.66 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -65.92 1.77 -64.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643389574.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.205 kcal (2) G-P(sol) polarization free energy of solvation -65.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds