Wall clock time and date at job start Mon Mar 30 2020 02:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.58918 * 2 1 4 4 C 1.53185 * 109.58294 * 239.71403 * 2 1 3 5 5 H 1.09000 * 109.53150 * 305.40544 * 4 2 1 6 6 C 1.53000 * 109.49844 * 65.48923 * 4 2 1 7 7 O 1.42904 * 109.47669 * 184.83686 * 6 4 2 8 8 C 1.53044 * 109.31273 * 185.43543 * 4 2 1 9 9 C 1.53037 * 109.53648 * 61.37114 * 8 4 2 10 10 C 1.53199 * 109.31139 * 298.63285 * 9 8 4 11 11 N 1.46927 * 108.89052 * 54.56631 * 10 9 8 12 12 C 1.36934 * 120.63293 * 126.46933 * 11 10 9 13 13 H 1.07999 * 120.00225 * 208.92997 * 12 11 10 14 14 C 1.38813 * 120.00205 * 28.92031 * 12 11 10 15 15 N 1.31624 * 119.99702 * 15.01050 * 14 12 11 16 16 Si 1.86795 * 120.00445 * 195.00866 * 14 12 11 17 17 H 1.48501 * 109.46895 * 90.00147 * 16 14 12 18 18 H 1.48496 * 109.47567 * 210.00237 * 16 14 12 19 19 H 1.48496 * 109.47146 * 330.00353 * 16 14 12 20 20 H 1.08999 * 109.47608 * 180.28533 * 1 2 3 21 21 H 1.09005 * 109.46980 * 300.28174 * 1 2 3 22 22 H 1.09001 * 109.47030 * 60.27665 * 1 2 3 23 23 H 1.09007 * 109.47182 * 304.83428 * 6 4 2 24 24 H 1.08994 * 109.47422 * 64.83330 * 6 4 2 25 25 H 0.96694 * 114.00529 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.46128 * 301.34536 * 8 4 2 27 27 H 1.08999 * 109.46069 * 181.38992 * 8 4 2 28 28 H 1.09000 * 109.49979 * 178.68573 * 9 8 4 29 29 H 1.09000 * 109.50419 * 58.58304 * 9 8 4 30 30 H 1.08998 * 109.58708 * 174.42136 * 10 9 8 31 31 H 1.08996 * 109.58967 * 294.71030 * 10 9 8 32 32 H 0.96997 * 120.00351 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7279 -1.2463 5 1 1.6049 -1.7246 -1.2927 6 6 1.6509 0.0615 -2.4967 7 8 2.0306 -0.6727 -3.6624 8 6 3.5678 -0.8434 -1.1729 9 6 3.9603 -1.6610 0.0598 10 6 3.4685 -0.9437 1.3210 11 7 2.0257 -0.6963 1.1956 12 6 1.1594 -1.1097 2.1722 13 1 0.1406 -1.3628 1.9185 14 6 1.5907 -1.2036 3.4882 15 7 2.7158 -0.6273 3.8547 16 14 0.5743 -2.1477 4.7392 17 1 1.0066 -3.5683 4.7573 18 1 0.7701 -1.5536 6.0860 19 1 -0.8617 -2.0720 4.3688 20 1 -0.3634 -1.0276 0.0051 21 1 -0.3633 0.5182 0.8875 22 1 -0.3633 0.5095 -0.8925 23 1 0.5725 0.2202 -2.5026 24 1 2.1599 1.0253 -2.4927 25 1 1.8113 -0.2311 -4.4942 26 1 4.0045 0.1527 -1.1022 27 1 3.9380 -1.3391 -2.0703 28 1 5.0448 -1.7627 0.0987 29 1 3.5036 -2.6490 0.0018 30 1 3.6576 -1.5685 2.1939 31 1 3.9938 0.0051 1.4301 32 1 3.0171 -0.6925 4.7744 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001643389575.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:15 Heat of formation + Delta-G solvation = -43.304168 kcal Electronic energy + Delta-G solvation = -13625.860218 eV Core-core repulsion = 11393.488439 eV Total energy + Delta-G solvation = -2232.371778 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.36232 -36.10366 -33.06769 -32.04946 -30.25061 -26.81997 -25.17295 -24.41851 -21.08194 -20.35637 -19.02484 -17.08180 -16.25894 -15.10887 -14.58702 -13.99725 -13.68279 -13.51521 -13.18315 -12.60700 -12.33400 -11.82572 -11.49718 -11.17573 -10.89448 -10.80001 -10.54989 -10.35762 -10.15088 -9.94309 -9.91220 -9.64804 -9.28871 -9.16076 -8.41169 -6.58520 -5.72626 -3.16222 3.40476 3.47152 3.48029 4.44161 4.63353 5.30312 5.38379 5.42566 5.60777 5.70621 5.87841 6.01009 6.11890 6.17544 6.31492 6.42912 6.47400 6.55337 6.68636 6.82051 6.86293 7.01472 7.09373 7.18819 7.49890 7.75742 7.84440 7.86925 8.51624 9.27496 9.91282 10.48658 11.35807 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.050847 B = 0.011013 C = 0.009758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.534620 B = 2541.794854 C = 2868.803123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.177 3.823 3 H 0.024 0.976 4 C -0.099 4.099 5 H 0.072 0.928 6 C 0.080 3.920 7 O -0.574 6.574 8 C -0.099 4.099 9 C -0.144 4.144 10 C 0.170 3.830 11 N -0.586 5.586 12 C -0.248 4.248 13 H 0.070 0.930 14 C 0.000 4.000 15 N -0.904 5.904 16 Si 0.902 3.098 17 H -0.288 1.288 18 H -0.292 1.292 19 H -0.279 1.279 20 H 0.054 0.946 21 H 0.061 0.939 22 H 0.039 0.961 23 H 0.045 0.955 24 H 0.040 0.960 25 H 0.369 0.631 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.016 0.984 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 1.243 -10.027 10.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.070 3.930 3 H 0.041 0.959 4 C -0.119 4.119 5 H 0.090 0.910 6 C 0.002 3.998 7 O -0.379 6.379 8 C -0.137 4.137 9 C -0.183 4.183 10 C 0.044 3.956 11 N -0.309 5.309 12 C -0.377 4.377 13 H 0.087 0.913 14 C -0.198 4.198 15 N -0.549 5.549 16 Si 0.732 3.268 17 H -0.215 1.215 18 H -0.218 1.218 19 H -0.205 1.205 20 H 0.073 0.927 21 H 0.081 0.919 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.215 0.785 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.034 0.966 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.892 0.834 -9.368 9.447 hybrid contribution -0.618 -0.027 0.298 0.686 sum -1.510 0.807 -9.070 9.230 Atomic orbital electron populations 1.21896 0.96194 1.01520 1.00155 1.20315 0.92670 0.93387 0.86600 0.95852 1.21731 0.96839 1.00232 0.93111 0.90991 1.22380 0.97833 0.94119 0.85500 1.86520 1.85442 1.49896 1.16010 1.21365 0.95005 0.99601 0.97734 1.22205 0.98799 0.99640 0.97654 1.20802 0.83216 0.97088 0.94454 1.44081 1.03112 1.65333 1.18421 1.19203 0.94746 1.37532 0.86267 0.91267 1.25076 0.97890 0.99909 0.96926 1.70027 1.23237 1.44772 1.16896 0.86295 0.79803 0.79800 0.80907 1.21535 1.21825 1.20477 0.92707 0.91945 0.94238 0.93693 0.94197 0.78544 0.93275 0.93123 0.93470 0.92896 0.89495 0.96576 0.93750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 7.72 37.16 0.29 -2.41 16 2 C 0.18 3.78 2.95 -67.58 -0.20 3.58 16 3 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.10 -1.86 2.05 -90.50 -0.19 -2.05 16 5 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 6 C 0.08 1.21 6.30 37.16 0.23 1.45 16 7 O -0.57 -8.32 13.17 -35.23 -0.46 -8.78 16 8 C -0.10 -1.88 5.08 -26.69 -0.14 -2.02 16 9 C -0.14 -2.97 6.08 -26.61 -0.16 -3.14 16 10 C 0.17 4.22 5.28 -3.71 -0.02 4.20 16 11 N -0.59 -14.95 3.00 -164.75 -0.49 -15.45 16 12 C -0.25 -6.80 8.62 -15.06 -0.13 -6.93 16 13 H 0.07 1.85 6.21 -52.49 -0.33 1.53 16 14 C 0.00 0.01 4.96 -17.43 -0.09 -0.08 16 15 N -0.90 -26.56 11.13 55.49 0.62 -25.94 16 16 Si 0.90 21.95 29.58 -169.99 -5.03 16.92 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H 0.05 1.08 7.42 -51.93 -0.39 0.69 16 21 H 0.06 1.28 7.66 -51.93 -0.40 0.88 16 22 H 0.04 0.62 6.50 -51.93 -0.34 0.28 16 23 H 0.04 0.63 6.39 -51.92 -0.33 0.30 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.37 3.36 9.12 45.56 0.42 3.78 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.91 7.79 -51.93 -0.40 0.51 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.09 2.39 6.05 -51.93 -0.31 2.08 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 249.69 15.07 3.76 3.76 Total: -1.00 -30.50 249.69 -6.18 -36.68 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -4.18 Total: 0.20 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -0.40 Total: -7.39 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.12 Total: -41.39 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.46 Total: -8.78 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.50 -6.18 -36.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643389575.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.626 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds