Wall clock time and date at job start Mon Mar 30 2020 02:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.58918 * 2 1 4 4 C 1.53185 * 109.58294 * 239.71403 * 2 1 3 5 5 H 1.09000 * 109.53150 * 305.40544 * 4 2 1 6 6 C 1.53000 * 109.49844 * 65.48923 * 4 2 1 7 7 O 1.42904 * 109.47669 * 184.83686 * 6 4 2 8 8 C 1.53044 * 109.31273 * 185.43543 * 4 2 1 9 9 C 1.53037 * 109.53648 * 61.37114 * 8 4 2 10 10 C 1.53199 * 109.31139 * 298.63285 * 9 8 4 11 11 N 1.46927 * 108.89052 * 54.56631 * 10 9 8 12 12 C 1.36934 * 120.63293 * 126.46933 * 11 10 9 13 13 H 1.07999 * 120.00225 * 208.92997 * 12 11 10 14 14 C 1.38813 * 120.00205 * 28.92031 * 12 11 10 15 15 N 1.31624 * 119.99702 * 15.01050 * 14 12 11 16 16 Si 1.86795 * 120.00445 * 195.00866 * 14 12 11 17 17 H 1.48501 * 109.46895 * 90.00147 * 16 14 12 18 18 H 1.48496 * 109.47567 * 210.00237 * 16 14 12 19 19 H 1.48496 * 109.47146 * 330.00353 * 16 14 12 20 20 H 1.08999 * 109.47608 * 180.28533 * 1 2 3 21 21 H 1.09005 * 109.46980 * 300.28174 * 1 2 3 22 22 H 1.09001 * 109.47030 * 60.27665 * 1 2 3 23 23 H 1.09007 * 109.47182 * 304.83428 * 6 4 2 24 24 H 1.08994 * 109.47422 * 64.83330 * 6 4 2 25 25 H 0.96694 * 114.00529 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.46128 * 301.34536 * 8 4 2 27 27 H 1.08999 * 109.46069 * 181.38992 * 8 4 2 28 28 H 1.09000 * 109.49979 * 178.68573 * 9 8 4 29 29 H 1.09000 * 109.50419 * 58.58304 * 9 8 4 30 30 H 1.08998 * 109.58708 * 174.42136 * 10 9 8 31 31 H 1.08996 * 109.58967 * 294.71030 * 10 9 8 32 32 H 0.96997 * 120.00351 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7279 -1.2463 5 1 1.6049 -1.7246 -1.2927 6 6 1.6509 0.0615 -2.4967 7 8 2.0306 -0.6727 -3.6624 8 6 3.5678 -0.8434 -1.1729 9 6 3.9603 -1.6610 0.0598 10 6 3.4685 -0.9437 1.3210 11 7 2.0257 -0.6963 1.1956 12 6 1.1594 -1.1097 2.1722 13 1 0.1406 -1.3628 1.9185 14 6 1.5907 -1.2036 3.4882 15 7 2.7158 -0.6273 3.8547 16 14 0.5743 -2.1477 4.7392 17 1 1.0066 -3.5683 4.7573 18 1 0.7701 -1.5536 6.0860 19 1 -0.8617 -2.0720 4.3688 20 1 -0.3634 -1.0276 0.0051 21 1 -0.3633 0.5182 0.8875 22 1 -0.3633 0.5095 -0.8925 23 1 0.5725 0.2202 -2.5026 24 1 2.1599 1.0253 -2.4927 25 1 1.8113 -0.2311 -4.4942 26 1 4.0045 0.1527 -1.1022 27 1 3.9380 -1.3391 -2.0703 28 1 5.0448 -1.7627 0.0987 29 1 3.5036 -2.6490 0.0018 30 1 3.6576 -1.5685 2.1939 31 1 3.9938 0.0051 1.4301 32 1 3.0171 -0.6925 4.7744 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001643389575.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:14 Heat of formation + Delta-G solvation = -64.925888 kcal Electronic energy + Delta-G solvation = -13626.797806 eV Core-core repulsion = 11393.488439 eV Total energy + Delta-G solvation = -2233.309366 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.96220 -37.41838 -34.91369 -33.73337 -32.13487 -28.44734 -27.02305 -26.05865 -22.81490 -22.04249 -20.68900 -18.39049 -18.09894 -17.02351 -15.91021 -15.77268 -15.44223 -15.07165 -14.87162 -14.27064 -13.98256 -13.39238 -13.21833 -12.80461 -12.74964 -12.57721 -12.23622 -12.18645 -11.97347 -11.67684 -11.58585 -11.10537 -10.98757 -10.63290 -10.51378 -8.62976 -7.83493 -5.29675 1.46226 1.47959 1.56219 2.51525 3.28926 3.40249 3.71642 3.92339 4.13978 4.23461 4.40920 4.58029 4.63298 4.66178 4.71590 4.77071 4.95318 4.98449 5.07231 5.13800 5.27554 5.42725 5.45256 5.54588 5.61304 5.71548 5.79597 6.43126 7.02070 7.18116 7.90198 8.42600 9.23298 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.050847 B = 0.011013 C = 0.009758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.534620 B = 2541.794854 C = 2868.803123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.169 3.831 3 H 0.018 0.982 4 C -0.094 4.094 5 H 0.054 0.946 6 C 0.089 3.911 7 O -0.589 6.589 8 C -0.094 4.094 9 C -0.134 4.134 10 C 0.175 3.825 11 N -0.606 5.606 12 C -0.251 4.251 13 H 0.074 0.926 14 C -0.056 4.056 15 N -0.938 5.938 16 Si 0.964 3.036 17 H -0.288 1.288 18 H -0.296 1.296 19 H -0.267 1.267 20 H 0.046 0.954 21 H 0.042 0.958 22 H 0.080 0.920 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.395 0.605 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.053 0.947 31 H -0.005 1.005 32 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 1.267 -11.875 12.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.063 3.937 3 H 0.036 0.964 4 C -0.114 4.114 5 H 0.073 0.927 6 C 0.011 3.989 7 O -0.397 6.397 8 C -0.132 4.132 9 C -0.173 4.173 10 C 0.049 3.951 11 N -0.330 5.330 12 C -0.381 4.381 13 H 0.092 0.908 14 C -0.251 4.251 15 N -0.585 5.585 16 Si 0.793 3.207 17 H -0.216 1.216 18 H -0.223 1.223 19 H -0.191 1.191 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.098 0.902 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.244 0.756 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.013 0.987 32 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.776 0.867 -11.269 11.441 hybrid contribution -0.336 -0.007 0.798 0.866 sum -2.112 0.860 -10.471 10.717 Atomic orbital electron populations 1.21821 0.94578 1.01298 1.01248 1.20536 0.94117 0.92902 0.86105 0.96406 1.21560 0.96446 0.99500 0.93898 0.92722 1.22155 0.98910 0.93573 0.84244 1.86441 1.85649 1.50593 1.17031 1.21327 0.95294 0.99499 0.97047 1.22055 0.99828 0.98876 0.96537 1.20605 0.83423 0.95770 0.95279 1.44382 1.03087 1.66060 1.19447 1.19530 0.95170 1.36543 0.86858 0.90821 1.25833 0.99187 1.01246 0.98836 1.70186 1.24982 1.46516 1.16844 0.85298 0.78985 0.78134 0.78268 1.21556 1.22274 1.19120 0.93469 0.93849 0.90183 0.92023 0.92896 0.75557 0.92882 0.91530 0.91551 0.93685 0.92906 0.98690 0.94344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 7.72 71.98 0.56 -4.29 16 2 C 0.17 7.03 2.95 44.97 0.13 7.17 16 3 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 4 C -0.09 -3.34 2.05 -10.72 -0.02 -3.36 16 5 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 6 C 0.09 2.38 6.30 71.98 0.45 2.83 16 7 O -0.59 -14.70 13.17 -148.98 -1.96 -16.66 16 8 C -0.09 -3.37 5.08 30.62 0.16 -3.21 16 9 C -0.13 -5.46 6.08 30.67 0.19 -5.28 16 10 C 0.17 8.87 5.28 86.36 0.46 9.33 16 11 N -0.61 -31.17 3.00 -675.14 -2.03 -33.19 16 12 C -0.25 -13.87 8.62 84.03 0.72 -13.15 16 13 H 0.07 3.93 6.21 -2.91 -0.02 3.91 16 14 C -0.06 -3.21 4.96 84.86 0.42 -2.78 16 15 N -0.94 -56.74 11.13 21.65 0.24 -56.50 16 16 Si 0.96 45.71 29.58 68.60 2.03 47.74 16 17 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 18 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 20 H 0.05 1.78 7.42 -2.39 -0.02 1.76 16 21 H 0.04 1.73 7.66 -2.38 -0.02 1.71 16 22 H 0.08 2.25 6.50 -2.39 -0.02 2.24 16 23 H 0.06 1.44 6.39 -2.38 -0.02 1.43 16 24 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.39 5.47 9.12 -74.06 -0.68 4.79 16 26 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.07 2.20 7.79 -2.39 -0.02 2.18 16 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 3.02 6.05 -2.39 -0.01 3.00 16 31 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -65.88 249.69 1.77 -64.11 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 0.42 Total: 7.24 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 3.06 Total: -12.74 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -1.78 Total: -89.69 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -1.96 Total: -16.66 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -65.88 1.77 -64.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643389575.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.812 kcal (2) G-P(sol) polarization free energy of solvation -65.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds